Wall clock time and date at job start Tue Mar 31 2020 20:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47151 * 2 1 4 4 N 1.46490 * 109.47622 * 120.00537 * 2 1 3 5 5 C 1.36946 * 119.99823 * 274.99763 * 4 2 1 6 6 H 1.07994 * 119.99649 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99922 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00222 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99745 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47230 * 60.00331 * 9 7 5 11 11 H 1.48502 * 109.47315 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47404 * 300.00515 * 9 7 5 13 13 C 1.53008 * 109.46793 * 240.00393 * 2 1 3 14 14 H 1.08997 * 109.49582 * 184.93089 * 13 2 1 15 15 C 1.53044 * 109.52383 * 64.85204 * 13 2 1 16 16 C 1.53040 * 109.53662 * 178.66719 * 15 13 2 17 17 C 1.53197 * 109.31110 * 61.36306 * 16 15 13 18 18 N 1.46957 * 108.89063 * 305.44560 * 17 16 15 19 19 C 1.34780 * 120.65462 * 233.53473 * 18 17 16 20 20 O 1.21276 * 120.00248 * 179.81541 * 19 18 17 21 21 C 1.50701 * 119.99585 * 359.81587 * 19 18 17 22 22 O 1.42899 * 109.47008 * 179.97438 * 21 19 18 23 23 C 1.36236 * 117.00197 * 179.97438 * 22 21 19 24 24 C 1.38663 * 122.58605 * 179.97438 * 23 22 21 25 25 C 1.33431 * 114.88639 * 179.97438 * 24 23 22 26 26 S 1.75868 * 109.65726 * 359.97438 * 25 24 23 27 27 C 1.33622 * 122.58439 * 359.71548 * 23 22 21 28 28 C 1.46926 * 118.71783 * 53.35357 * 18 17 16 29 29 H 1.08994 * 109.47258 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46691 * 299.99627 * 1 2 3 31 31 H 1.08996 * 109.47523 * 59.99420 * 1 2 3 32 32 H 0.96994 * 120.00742 * 94.99166 * 4 2 1 33 33 H 0.96998 * 119.99831 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.45986 * 298.68523 * 15 13 2 35 35 H 1.09000 * 109.45849 * 58.64612 * 15 13 2 36 36 H 1.08995 * 109.49643 * 181.31582 * 16 15 13 37 37 H 1.08994 * 109.49843 * 301.38341 * 16 15 13 38 38 H 1.09001 * 109.58145 * 65.15551 * 17 16 15 39 39 H 1.08997 * 109.58684 * 185.43073 * 17 16 15 40 40 H 1.09002 * 109.47438 * 299.99718 * 21 19 18 41 41 H 1.08999 * 109.47522 * 60.00065 * 21 19 18 42 42 H 1.08002 * 122.56121 * 359.96108 * 24 23 22 43 43 H 1.07999 * 125.17188 * 180.02562 * 25 24 23 44 44 H 1.07998 * 125.19815 * 359.97438 * 27 23 22 45 45 H 1.09002 * 109.58861 * 186.78362 * 28 18 17 46 46 H 1.08996 * 109.58519 * 66.50253 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1493 -0.0075 2.3757 6 1 1.8928 1.0404 2.4241 7 6 2.6116 -0.6621 3.5091 8 7 2.9247 -1.9392 3.4500 9 14 2.7908 0.2699 5.1180 10 1 1.4688 0.8077 5.5285 11 1 3.2997 -0.6485 6.1681 12 1 3.7467 1.3917 4.9365 13 6 2.0399 -0.7212 -1.2494 14 1 3.1263 -0.7986 -1.2068 15 6 1.6325 0.0664 -2.4967 16 6 2.1708 -0.6371 -3.7447 17 6 1.5618 -2.0397 -3.8381 18 7 1.8223 -2.7561 -2.5817 19 6 2.4135 -3.9672 -2.5910 20 8 2.6259 -4.5465 -1.5469 21 6 2.8106 -4.6017 -3.8991 22 8 3.4141 -5.8725 -3.6482 23 6 3.8328 -6.5831 -4.7325 24 6 4.4336 -7.8280 -4.6228 25 6 4.7828 -8.3872 -5.7829 26 16 4.3470 -7.3182 -7.1097 27 6 3.6917 -6.1365 -5.9839 28 6 1.4294 -2.1247 -1.3145 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.2490 -1.6318 1.1525 33 1 3.2481 -2.3964 4.2419 34 1 0.5453 0.1222 -2.5519 35 1 2.0453 1.0737 -2.4411 36 1 1.9003 -0.0632 -4.6310 37 1 3.2560 -0.7148 -3.6789 38 1 0.4861 -1.9611 -3.9952 39 1 2.0140 -2.5797 -4.6699 40 1 1.9258 -4.7357 -4.5213 41 1 3.5228 -3.9570 -4.4142 42 1 4.6060 -8.3084 -3.6710 43 1 5.2597 -9.3501 -5.8908 44 1 3.2441 -5.1937 -6.2616 45 1 1.7961 -2.7218 -0.4795 46 1 0.3430 -2.0534 -1.2632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568414127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:35 Heat of formation + Delta-G solvation = -19.771938 kcal Electronic energy + Delta-G solvation = -27153.832875 eV Core-core repulsion = 23364.244495 eV Total energy + Delta-G solvation = -3789.588379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.60058 -39.66785 -37.84655 -36.08908 -35.48294 -33.01856 -31.92354 -30.22738 -29.38908 -28.93341 -27.67024 -25.35206 -24.49418 -23.58322 -23.16452 -21.24961 -20.02560 -19.62347 -18.70587 -18.46140 -17.25745 -17.18928 -16.72776 -16.55468 -15.75904 -14.90028 -14.80649 -14.65602 -14.38632 -14.34010 -13.87304 -13.75335 -13.52180 -13.30164 -13.09325 -12.94095 -12.73298 -12.63837 -12.47401 -12.07642 -11.91758 -11.55799 -11.23598 -11.21260 -11.17913 -11.01081 -10.82002 -10.64842 -10.45003 -10.25800 -10.24102 -9.91111 -9.65774 -9.49920 -9.15645 -8.86142 -8.51545 -8.28908 -6.90669 -5.68662 -2.98767 0.66610 1.30220 1.65533 2.43354 2.45746 2.60150 3.40371 3.47696 3.51758 3.53600 4.27146 4.52779 4.60650 4.65393 4.71044 4.76070 4.86088 4.94767 4.95458 5.06625 5.19411 5.28675 5.33862 5.58384 5.60520 5.61946 5.65361 5.74660 5.79474 5.83879 5.88613 5.94048 6.05137 6.11246 6.23727 6.35028 6.37591 6.53848 6.62357 6.74564 6.90518 6.96847 7.13623 7.39078 7.74854 8.18982 8.48805 9.59488 10.17500 10.51367 11.53298 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015996 B = 0.002403 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.984090 B =11649.943867 C =13056.291197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.181 3.819 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.241 4.241 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.287 1.287 13 C -0.104 4.104 14 H 0.074 0.926 15 C -0.114 4.114 16 C -0.135 4.135 17 C 0.105 3.895 18 N -0.608 5.608 19 C 0.512 3.488 20 O -0.505 6.505 21 C 0.047 3.953 22 O -0.276 6.276 23 C 0.121 3.879 24 C -0.139 4.139 25 C -0.186 4.186 26 S 0.112 5.888 27 C -0.329 4.329 28 C 0.117 3.883 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.385 0.615 33 H 0.256 0.744 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.153 0.847 43 H 0.173 0.827 44 H 0.166 0.834 45 H 0.101 0.899 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.872 -6.272 -26.576 27.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.070 3.930 3 H 0.067 0.933 4 N -0.367 5.367 5 C -0.372 4.372 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.217 1.217 12 H -0.214 1.214 13 C -0.124 4.124 14 H 0.093 0.907 15 C -0.152 4.152 16 C -0.173 4.173 17 C -0.018 4.018 18 N -0.343 5.343 19 C 0.297 3.703 20 O -0.378 6.378 21 C -0.032 4.032 22 O -0.189 6.189 23 C 0.064 3.936 24 C -0.170 4.170 25 C -0.321 4.321 26 S 0.372 5.628 27 C -0.465 4.465 28 C -0.004 4.004 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.219 0.781 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.171 0.829 43 H 0.191 0.809 44 H 0.183 0.817 45 H 0.119 0.881 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.586 -6.614 -27.180 27.979 hybrid contribution -0.055 0.525 2.179 2.242 sum -0.641 -6.089 -25.001 25.740 Atomic orbital electron populations 1.22585 0.99557 1.00884 0.99966 1.20167 0.91814 0.95281 0.85736 0.93285 1.42491 1.78126 1.10813 1.05296 1.19162 1.36927 0.93777 0.87383 0.91313 1.24757 1.02178 0.95943 0.98021 1.69665 1.50489 1.08577 1.28958 0.86303 0.77687 0.78581 0.83786 1.21351 1.21741 1.21365 1.21798 1.01073 0.94166 0.95389 0.90712 1.21607 1.01119 0.99024 0.93471 1.21926 1.01158 0.95158 0.99061 1.21779 1.00957 0.93479 0.85603 1.48086 1.60409 1.17432 1.08417 1.19910 0.78574 0.81671 0.90149 1.90825 1.52287 1.61515 1.33175 1.22516 0.98942 0.84735 0.97041 1.86244 1.74058 1.29895 1.28695 1.17936 0.97299 0.92584 0.85768 1.19541 1.03009 0.94130 1.00358 1.25524 1.07146 1.04413 0.95056 1.84128 1.58770 1.10694 1.09206 1.25318 1.18111 1.07378 0.95665 1.21894 0.99492 0.93849 0.85149 0.93229 0.92852 0.94324 0.78063 0.93419 0.91415 0.91494 0.90802 0.91453 0.90965 0.90597 0.89295 0.89222 0.82907 0.80949 0.81664 0.88051 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 8.77 37.16 0.33 -2.61 16 2 C 0.18 3.48 2.67 -67.93 -0.18 3.30 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 N -0.73 -18.30 5.06 -53.43 -0.27 -18.57 16 5 C -0.24 -6.77 9.93 -15.05 -0.15 -6.92 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -29.03 13.06 55.49 0.72 -28.31 16 9 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 C -0.10 -1.66 2.27 -90.49 -0.21 -1.86 16 14 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.11 -1.32 4.89 -26.69 -0.13 -1.45 16 16 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 17 C 0.10 0.93 6.33 -3.69 -0.02 0.90 16 18 N -0.61 -8.20 2.98 -172.74 -0.51 -8.71 16 19 C 0.51 7.92 7.78 -10.98 -0.09 7.84 16 20 O -0.50 -10.64 15.91 -14.35 -0.23 -10.87 16 21 C 0.05 0.52 3.70 36.01 0.13 0.65 16 22 O -0.28 -3.87 9.74 -40.40 -0.39 -4.26 16 23 C 0.12 1.38 6.64 -41.04 -0.27 1.11 16 24 C -0.14 -1.40 10.17 -41.11 -0.42 -1.82 16 25 C -0.19 -1.45 11.22 29.05 0.33 -1.12 16 26 S 0.11 0.85 23.34 -107.50 -2.51 -1.66 16 27 C -0.33 -3.00 10.09 29.12 0.29 -2.70 16 28 C 0.12 1.91 5.18 -3.71 -0.02 1.89 16 29 H 0.05 0.87 6.23 -51.93 -0.32 0.54 16 30 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.04 0.54 6.59 -51.93 -0.34 0.19 16 32 H 0.38 10.55 6.47 -40.82 -0.26 10.28 16 33 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 34 H 0.07 0.73 6.63 -51.93 -0.34 0.39 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.47 5.95 -51.93 -0.31 0.16 16 40 H 0.09 0.73 7.65 -51.93 -0.40 0.34 16 41 H 0.09 0.78 7.42 -51.93 -0.39 0.40 16 42 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.17 1.15 7.02 -52.49 -0.37 0.78 16 45 H 0.10 2.11 5.82 -51.93 -0.30 1.81 16 46 H 0.07 1.14 6.06 -51.93 -0.31 0.82 16 LS Contribution 377.20 15.07 5.68 5.68 Total: -1.00 -35.16 377.20 -9.89 -45.05 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.70 Total: 8.44 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -0.66 Total: -4.62 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.06 Total: -55.58 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.62 Total: -15.14 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.66 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.16 -9.89 -45.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568414127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.279 kcal (2) G-P(sol) polarization free energy of solvation -35.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds