Wall clock time and date at job start Tue Mar 31 2020 20:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47151 * 2 1 4 4 N 1.46490 * 109.47622 * 120.00537 * 2 1 3 5 5 C 1.36946 * 119.99823 * 274.99763 * 4 2 1 6 6 H 1.07994 * 119.99649 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99922 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00222 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99745 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47230 * 60.00331 * 9 7 5 11 11 H 1.48502 * 109.47315 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47404 * 300.00515 * 9 7 5 13 13 C 1.53008 * 109.46793 * 240.00393 * 2 1 3 14 14 H 1.08997 * 109.49582 * 184.93089 * 13 2 1 15 15 C 1.53044 * 109.52383 * 64.85204 * 13 2 1 16 16 C 1.53040 * 109.53662 * 178.66719 * 15 13 2 17 17 C 1.53197 * 109.31110 * 61.36306 * 16 15 13 18 18 N 1.46957 * 108.89063 * 305.44560 * 17 16 15 19 19 C 1.34780 * 120.65462 * 233.53473 * 18 17 16 20 20 O 1.21276 * 120.00248 * 179.81541 * 19 18 17 21 21 C 1.50701 * 119.99585 * 359.81587 * 19 18 17 22 22 O 1.42899 * 109.47008 * 179.97438 * 21 19 18 23 23 C 1.36236 * 117.00197 * 179.97438 * 22 21 19 24 24 C 1.38663 * 122.58605 * 179.97438 * 23 22 21 25 25 C 1.33431 * 114.88639 * 179.97438 * 24 23 22 26 26 S 1.75868 * 109.65726 * 359.97438 * 25 24 23 27 27 C 1.33622 * 122.58439 * 359.71548 * 23 22 21 28 28 C 1.46926 * 118.71783 * 53.35357 * 18 17 16 29 29 H 1.08994 * 109.47258 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46691 * 299.99627 * 1 2 3 31 31 H 1.08996 * 109.47523 * 59.99420 * 1 2 3 32 32 H 0.96994 * 120.00742 * 94.99166 * 4 2 1 33 33 H 0.96998 * 119.99831 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.45986 * 298.68523 * 15 13 2 35 35 H 1.09000 * 109.45849 * 58.64612 * 15 13 2 36 36 H 1.08995 * 109.49643 * 181.31582 * 16 15 13 37 37 H 1.08994 * 109.49843 * 301.38341 * 16 15 13 38 38 H 1.09001 * 109.58145 * 65.15551 * 17 16 15 39 39 H 1.08997 * 109.58684 * 185.43073 * 17 16 15 40 40 H 1.09002 * 109.47438 * 299.99718 * 21 19 18 41 41 H 1.08999 * 109.47522 * 60.00065 * 21 19 18 42 42 H 1.08002 * 122.56121 * 359.96108 * 24 23 22 43 43 H 1.07999 * 125.17188 * 180.02562 * 25 24 23 44 44 H 1.07998 * 125.19815 * 359.97438 * 27 23 22 45 45 H 1.09002 * 109.58861 * 186.78362 * 28 18 17 46 46 H 1.08996 * 109.58519 * 66.50253 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1493 -0.0075 2.3757 6 1 1.8928 1.0404 2.4241 7 6 2.6116 -0.6621 3.5091 8 7 2.9247 -1.9392 3.4500 9 14 2.7908 0.2699 5.1180 10 1 1.4688 0.8077 5.5285 11 1 3.2997 -0.6485 6.1681 12 1 3.7467 1.3917 4.9365 13 6 2.0399 -0.7212 -1.2494 14 1 3.1263 -0.7986 -1.2068 15 6 1.6325 0.0664 -2.4967 16 6 2.1708 -0.6371 -3.7447 17 6 1.5618 -2.0397 -3.8381 18 7 1.8223 -2.7561 -2.5817 19 6 2.4135 -3.9672 -2.5910 20 8 2.6259 -4.5465 -1.5469 21 6 2.8106 -4.6017 -3.8991 22 8 3.4141 -5.8725 -3.6482 23 6 3.8328 -6.5831 -4.7325 24 6 4.4336 -7.8280 -4.6228 25 6 4.7828 -8.3872 -5.7829 26 16 4.3470 -7.3182 -7.1097 27 6 3.6917 -6.1365 -5.9839 28 6 1.4294 -2.1247 -1.3145 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.2490 -1.6318 1.1525 33 1 3.2481 -2.3964 4.2419 34 1 0.5453 0.1222 -2.5519 35 1 2.0453 1.0737 -2.4411 36 1 1.9003 -0.0632 -4.6310 37 1 3.2560 -0.7148 -3.6789 38 1 0.4861 -1.9611 -3.9952 39 1 2.0140 -2.5797 -4.6699 40 1 1.9258 -4.7357 -4.5213 41 1 3.5228 -3.9570 -4.4142 42 1 4.6060 -8.3084 -3.6710 43 1 5.2597 -9.3501 -5.8908 44 1 3.2441 -5.1937 -6.2616 45 1 1.7961 -2.7218 -0.4795 46 1 0.3430 -2.0534 -1.2632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568414127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:35 Heat of formation + Delta-G solvation = -43.076701 kcal Electronic energy + Delta-G solvation = -27154.843445 eV Core-core repulsion = 23364.244495 eV Total energy + Delta-G solvation = -3790.598950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63725 -40.59949 -39.12212 -37.00018 -36.86148 -34.71276 -33.23990 -31.69520 -30.32081 -30.01590 -29.01383 -26.43378 -26.14119 -24.72110 -24.29245 -22.40201 -20.92603 -20.72474 -19.88501 -19.33889 -19.08854 -18.06836 -17.82554 -17.46593 -16.89717 -16.71378 -15.91423 -15.85659 -15.51105 -15.33444 -15.24321 -15.01633 -14.61701 -14.43364 -14.06957 -14.02303 -13.93097 -13.65304 -13.62526 -13.34191 -12.98699 -12.84562 -12.79224 -12.65241 -12.33563 -12.14501 -12.01019 -11.89795 -11.84840 -11.80074 -11.76014 -11.40372 -11.19783 -10.94098 -10.83859 -9.79540 -9.66704 -9.01741 -8.95453 -7.92956 -5.22748 0.01332 0.68519 0.99616 1.42471 1.43536 1.47667 1.53306 1.53934 1.71592 2.53614 2.55449 3.32945 3.39483 3.72467 3.83892 3.89111 3.92624 4.01462 4.04550 4.08910 4.16473 4.30281 4.35129 4.39582 4.44703 4.58634 4.62888 4.72226 4.82725 4.88054 4.90966 4.92463 4.94781 5.10302 5.10698 5.15992 5.22533 5.25096 5.38274 5.44362 5.48803 5.55227 5.68786 6.16339 6.27913 6.36249 7.05753 7.32554 8.11761 8.32463 9.30386 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015996 B = 0.002403 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.984090 B =11649.943867 C =13056.291197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.048 0.952 4 N -0.742 5.742 5 C -0.236 4.236 6 H 0.079 0.921 7 C -0.084 4.084 8 N -0.975 5.975 9 Si 0.975 3.025 10 H -0.275 1.275 11 H -0.300 1.300 12 H -0.276 1.276 13 C -0.091 4.091 14 H 0.042 0.958 15 C -0.109 4.109 16 C -0.129 4.129 17 C 0.095 3.905 18 N -0.602 5.602 19 C 0.500 3.500 20 O -0.581 6.581 21 C 0.055 3.945 22 O -0.317 6.317 23 C 0.090 3.910 24 C -0.173 4.173 25 C -0.178 4.178 26 S 0.152 5.848 27 C -0.326 4.326 28 C 0.124 3.876 29 H 0.042 0.958 30 H 0.032 0.968 31 H 0.083 0.917 32 H 0.368 0.632 33 H 0.248 0.752 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.144 0.856 43 H 0.199 0.801 44 H 0.190 0.810 45 H 0.043 0.957 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.921 -4.477 -30.966 31.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.062 3.938 3 H 0.066 0.934 4 N -0.383 5.383 5 C -0.368 4.368 6 H 0.097 0.903 7 C -0.275 4.275 8 N -0.626 5.626 9 Si 0.803 3.197 10 H -0.201 1.201 11 H -0.226 1.226 12 H -0.202 1.202 13 C -0.111 4.111 14 H 0.061 0.939 15 C -0.147 4.147 16 C -0.167 4.167 17 C -0.026 4.026 18 N -0.335 5.335 19 C 0.288 3.712 20 O -0.460 6.460 21 C -0.023 4.023 22 O -0.231 6.231 23 C 0.034 3.966 24 C -0.204 4.204 25 C -0.313 4.313 26 S 0.413 5.587 27 C -0.462 4.462 28 C 0.002 3.998 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.200 0.800 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.133 0.867 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.131 0.869 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.161 0.839 43 H 0.216 0.784 44 H 0.208 0.792 45 H 0.061 0.939 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.672 -4.736 -31.670 32.066 hybrid contribution 0.260 -0.009 3.389 3.399 sum -1.412 -4.745 -28.281 28.711 Atomic orbital electron populations 1.22401 0.97308 1.00817 1.01156 1.20500 0.93256 0.94910 0.85090 0.93418 1.42790 1.78515 1.10290 1.06658 1.19631 1.34657 0.94199 0.88349 0.90306 1.25641 1.03252 0.96836 1.01806 1.69873 1.52800 1.10522 1.29374 0.85192 0.78060 0.77190 0.79216 1.20141 1.22619 1.20226 1.21612 0.98860 0.94328 0.96349 0.93910 1.21610 1.02360 0.98718 0.91996 1.21937 1.00441 0.95290 0.99059 1.22273 1.03025 0.93315 0.83968 1.48189 1.59144 1.17075 1.09138 1.20873 0.77506 0.81793 0.91041 1.90791 1.55441 1.63616 1.36133 1.22602 1.01080 0.84315 0.94322 1.86183 1.75043 1.31123 1.30795 1.18187 0.99183 0.93211 0.86042 1.19681 1.04949 0.94730 1.01054 1.25878 1.05714 1.05241 0.94506 1.84014 1.57397 1.09434 1.07861 1.25681 1.16953 1.08462 0.95072 1.21551 0.99671 0.93315 0.85289 0.93914 0.94862 0.89808 0.79991 0.94303 0.89590 0.90802 0.86659 0.92503 0.88475 0.86889 0.85564 0.86184 0.83860 0.78377 0.79233 0.93860 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.29 8.77 71.98 0.63 -4.66 16 2 C 0.17 6.66 2.67 45.00 0.12 6.78 16 3 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 4 N -0.74 -39.33 5.06 -322.94 -1.63 -40.96 16 5 C -0.24 -13.66 9.93 84.03 0.83 -12.82 16 6 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 7 C -0.08 -5.07 5.50 84.86 0.47 -4.61 16 8 N -0.97 -64.32 13.06 21.65 0.28 -64.03 16 9 Si 0.97 48.36 29.55 68.60 2.03 50.39 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 C -0.09 -2.93 2.27 -10.71 -0.02 -2.95 16 14 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 15 C -0.11 -2.16 4.89 30.62 0.15 -2.01 16 16 C -0.13 -1.75 6.08 30.67 0.19 -1.56 16 17 C 0.09 1.27 6.33 86.36 0.55 1.81 16 18 N -0.60 -15.87 2.98 -818.82 -2.44 -18.31 16 19 C 0.50 15.94 7.78 87.66 0.68 16.62 16 20 O -0.58 -26.84 15.91 16.02 0.25 -26.58 16 21 C 0.05 1.14 3.70 71.24 0.26 1.41 16 22 O -0.32 -9.11 9.74 -77.21 -0.75 -9.86 16 23 C 0.09 2.01 6.64 21.32 0.14 2.15 16 24 C -0.17 -3.53 10.17 21.28 0.22 -3.32 16 25 C -0.18 -2.50 11.22 66.73 0.75 -1.75 16 26 S 0.15 1.88 23.34 -56.49 -1.32 0.56 16 27 C -0.33 -5.07 10.09 66.77 0.67 -4.40 16 28 C 0.12 4.22 5.18 86.36 0.45 4.67 16 29 H 0.04 1.48 6.23 -2.39 -0.01 1.47 16 30 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.08 2.05 6.59 -2.39 -0.02 2.04 16 32 H 0.37 21.82 6.47 -92.71 -0.60 21.22 16 33 H 0.25 15.98 8.31 -92.71 -0.77 15.21 16 34 H 0.09 1.43 6.63 -2.39 -0.02 1.42 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.11 0.73 5.95 -2.39 -0.01 0.72 16 40 H 0.13 1.64 7.65 -2.39 -0.02 1.62 16 41 H 0.12 1.72 7.42 -2.39 -0.02 1.70 16 42 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 43 H 0.20 1.54 8.06 -2.91 -0.02 1.51 16 44 H 0.19 1.80 7.02 -2.91 -0.02 1.78 16 45 H 0.04 1.99 5.82 -2.39 -0.01 1.98 16 46 H 0.08 2.62 6.06 -2.39 -0.01 2.60 16 Total: -1.00 -86.31 377.20 2.90 -83.41 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.40 Total: 30.04 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 6.08 Total: -4.64 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -3.79 Total: -123.31 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.50 Total: -36.45 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.39 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -1.32 Total: 0.56 kcal Total: -86.31 2.90 -83.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568414127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.332 kcal (2) G-P(sol) polarization free energy of solvation -86.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds