Wall clock time and date at job start Tue Mar 31 2020 20:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47670 * 2 1 4 4 C 1.52996 * 109.47730 * 120.00478 * 2 1 3 5 5 N 1.46903 * 109.47571 * 175.15885 * 4 2 1 6 6 C 1.46895 * 111.00139 * 198.92784 * 5 4 2 7 7 C 1.46907 * 110.99519 * 74.97548 * 5 4 2 8 8 C 1.50697 * 109.46628 * 190.00223 * 7 5 4 9 9 O 1.21290 * 120.00211 * 359.97438 * 8 7 5 10 10 N 1.34780 * 119.99895 * 180.02562 * 8 7 5 11 11 C 1.37095 * 120.00355 * 180.02562 * 10 8 7 12 12 H 1.08005 * 119.99419 * 359.97438 * 11 10 8 13 13 C 1.38945 * 120.00151 * 179.97438 * 11 10 8 14 14 N 1.31406 * 120.00182 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99968 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46975 * 60.00093 * 15 13 11 17 17 H 1.48502 * 109.47276 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47268 * 300.00513 * 15 13 11 19 19 N 1.46502 * 109.47152 * 240.00371 * 2 1 3 20 20 C 1.34781 * 119.99952 * 82.98177 * 19 2 1 21 21 O 1.21563 * 119.99814 * 0.02562 * 20 19 2 22 22 C 1.47730 * 119.99740 * 180.02562 * 20 19 2 23 23 C 1.40153 * 120.52545 * 180.02562 * 22 20 19 24 24 C 1.38160 * 118.32165 * 179.97438 * 23 22 20 25 25 C 1.38752 * 119.28259 * 0.02562 * 24 23 22 26 26 F 1.35098 * 119.49229 * 179.97438 * 25 24 23 27 27 N 1.32150 * 121.01740 * 0.02562 * 25 24 23 28 28 C 1.31695 * 121.83833 * 359.97438 * 27 25 24 29 29 H 1.09008 * 109.46287 * 299.99572 * 1 2 3 30 30 H 1.08991 * 109.47094 * 59.99554 * 1 2 3 31 31 H 1.08999 * 109.47234 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47409 * 295.16409 * 4 2 1 33 33 H 1.09007 * 109.47009 * 55.15989 * 4 2 1 34 34 H 1.08996 * 109.47177 * 54.12076 * 6 5 4 35 35 H 1.08995 * 109.47248 * 174.12394 * 6 5 4 36 36 H 1.09005 * 109.46938 * 294.12224 * 6 5 4 37 37 H 1.08994 * 109.46748 * 309.99847 * 7 5 4 38 38 H 1.08994 * 109.47235 * 69.99982 * 7 5 4 39 39 H 0.97002 * 119.99903 * 359.97438 * 10 8 7 40 40 H 0.97003 * 120.00278 * 179.97438 * 14 13 11 41 41 H 0.96999 * 120.00619 * 262.99160 * 19 2 1 42 42 H 1.07998 * 120.84091 * 359.96454 * 23 22 20 43 43 H 1.07998 * 120.35619 * 180.02562 * 24 23 22 44 44 H 1.07996 * 119.69800 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5045 -0.8233 1.1920 6 6 3.9954 -1.8668 2.1020 7 6 4.1342 0.4709 1.4866 8 6 5.6079 0.3934 1.1814 9 8 6.0866 -0.6385 0.7605 10 7 6.3941 1.4704 1.3772 11 6 7.7347 1.4002 1.0991 12 1 8.1608 0.4815 0.7235 13 6 8.5452 2.5107 1.3005 14 7 8.0268 3.6281 1.7580 15 14 10.3720 2.4147 0.9222 16 1 10.5636 2.0863 -0.5133 17 1 11.0087 3.7227 1.2205 18 1 10.9960 1.3585 1.7592 19 7 2.0183 -0.6905 -1.1962 20 6 2.1085 -0.0286 -2.3668 21 8 1.7850 1.1415 -2.4299 22 6 2.6004 -0.7251 -3.5732 23 6 2.6991 -0.0474 -4.7960 24 6 3.1654 -0.7428 -5.8950 25 6 3.5173 -2.0776 -5.7543 26 9 3.9732 -2.7617 -6.8263 27 7 3.4123 -2.6902 -4.5882 28 6 2.9731 -2.0682 -3.5137 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.7493 -0.1600 2.1371 33 1 1.6077 -1.7210 1.2935 34 1 3.4880 -2.8067 1.8844 35 1 5.0692 -1.9933 1.9642 36 1 3.7931 -1.5748 3.1325 37 1 3.6761 1.2459 0.8722 38 1 3.9934 0.7120 2.5402 39 1 6.0113 2.2955 1.7142 40 1 8.5926 4.4033 1.8989 41 1 2.2766 -1.6241 -1.1459 42 1 2.4177 0.9921 -4.8772 43 1 3.2551 -0.2527 -6.8532 44 1 2.9008 -2.6027 -2.5780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569108037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:22 Heat of formation + Delta-G solvation = -64.925035 kcal Electronic energy + Delta-G solvation = -29206.441348 eV Core-core repulsion = 24880.974559 eV Total energy + Delta-G solvation = -4325.466789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.31581 -40.77747 -39.35154 -38.52945 -36.94167 -34.84505 -33.79156 -32.99151 -32.21512 -31.24390 -30.25522 -28.07848 -27.00650 -24.89455 -24.67864 -24.17709 -22.57111 -21.30610 -20.59792 -19.14725 -18.55787 -17.95259 -17.85116 -17.51337 -16.37025 -16.25186 -16.06215 -15.38749 -15.24345 -14.86422 -14.73616 -14.66674 -14.27952 -14.04494 -13.82406 -13.63515 -13.53431 -13.44488 -13.27034 -13.15812 -12.87878 -12.49148 -12.18341 -12.08373 -11.87676 -11.49134 -11.45344 -11.26290 -11.03189 -10.68668 -10.43806 -10.37410 -10.37066 -10.21190 -9.81171 -9.46654 -9.38275 -9.04405 -8.48660 -7.99873 -7.89855 -6.41140 -3.82023 0.23685 0.77825 2.64221 3.01742 3.19347 3.20089 3.25925 3.30156 3.51001 3.89292 3.93615 4.11326 4.22373 4.40953 4.47404 4.62564 4.68327 5.00042 5.02454 5.09436 5.16789 5.23755 5.26739 5.36233 5.49522 5.53188 5.56357 5.62046 5.67998 5.71633 5.86647 5.92579 5.97891 6.05269 6.17784 6.26920 6.42423 6.51118 7.17753 7.22450 7.28943 7.46156 7.55226 8.06184 8.14475 8.61947 9.18381 9.54765 10.06375 10.76512 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008365 B = 0.003441 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3346.517344 B = 8134.746127 C =10102.169142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.090 0.910 4 C 0.041 3.959 5 N -0.517 5.517 6 C 0.022 3.978 7 C 0.044 3.956 8 C 0.444 3.556 9 O -0.578 6.578 10 N -0.563 5.563 11 C -0.299 4.299 12 H 0.102 0.898 13 C 0.023 3.977 14 N -0.901 5.901 15 Si 0.930 3.070 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.274 1.274 19 N -0.697 5.697 20 C 0.569 3.431 21 O -0.537 6.537 22 C -0.193 4.193 23 C 0.011 3.989 24 C -0.201 4.201 25 C 0.327 3.673 26 F -0.109 7.109 27 N -0.515 5.515 28 C 0.179 3.821 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.015 0.985 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.402 0.598 42 H 0.159 0.841 43 H 0.155 0.845 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.731 -7.896 -6.819 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.108 0.892 4 C -0.088 4.088 5 N -0.240 5.240 6 C -0.125 4.125 7 C -0.087 4.087 8 C 0.230 3.770 9 O -0.463 6.463 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.120 0.880 13 C -0.178 4.178 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 N -0.348 5.348 20 C 0.354 3.646 21 O -0.415 6.415 22 C -0.198 4.198 23 C -0.015 4.015 24 C -0.222 4.222 25 C 0.174 3.826 26 F -0.088 7.088 27 N -0.230 5.230 28 C 0.021 3.979 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.034 0.966 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.238 0.762 42 H 0.177 0.823 43 H 0.173 0.827 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -16.143 -8.598 -7.547 19.786 hybrid contribution 0.584 1.059 0.661 1.378 sum -15.559 -7.539 -6.886 18.610 Atomic orbital electron populations 1.22151 0.94910 1.02168 1.02819 1.21008 0.93304 0.97830 0.83660 0.89245 1.22509 0.89291 1.00928 0.96054 1.61572 1.03176 1.05915 1.53379 1.22559 1.04258 0.93407 0.92309 1.21930 0.95556 0.91715 0.99547 1.19687 0.87133 0.85220 0.84977 1.90470 1.75188 1.30324 1.50284 1.41859 1.08366 1.12140 1.57622 1.19631 0.82875 0.99392 1.40998 0.88015 1.25245 1.00576 0.94857 0.97157 1.69601 1.36950 1.02285 1.45429 0.85939 0.81998 0.77290 0.79116 1.19906 1.20957 1.19921 1.45653 1.65768 1.15181 1.08158 1.17767 0.77788 0.86200 0.82799 1.90784 1.49788 1.15667 1.85290 1.21074 1.06770 0.96048 0.95921 1.21645 0.89522 1.00776 0.89582 1.21832 1.04892 0.93447 1.02014 1.18414 0.93418 0.87539 0.83273 1.91645 1.85536 1.80460 1.51125 1.67016 1.16916 1.40326 0.98699 1.22758 0.89246 0.90520 0.95407 0.91495 0.91725 0.92378 0.93079 0.90180 0.92280 0.88381 0.96633 0.89527 0.93400 0.77537 0.91818 0.76173 0.82310 0.82703 0.81105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.46 37.16 0.35 -1.06 16 2 C 0.15 1.61 2.55 -67.93 -0.17 1.44 16 3 H 0.09 1.20 6.41 -51.93 -0.33 0.87 16 4 C 0.04 0.43 4.54 -3.82 -0.02 0.41 16 5 N -0.52 -7.54 4.16 -244.38 -1.02 -8.56 16 6 C 0.02 0.32 9.17 60.06 0.55 0.87 16 7 C 0.04 0.75 5.28 -4.97 -0.03 0.73 16 8 C 0.44 10.27 7.52 -10.99 -0.08 10.19 16 9 O -0.58 -15.04 13.88 5.55 0.08 -14.97 16 10 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 11 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 12 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 13 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 14 N -0.90 -24.64 13.05 55.50 0.72 -23.91 16 15 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 N -0.70 -7.89 4.78 -54.79 -0.26 -8.15 16 20 C 0.57 7.57 7.72 -12.38 -0.10 7.47 16 21 O -0.54 -8.74 16.10 5.31 0.09 -8.65 16 22 C -0.19 -2.28 5.89 -104.83 -0.62 -2.89 16 23 C 0.01 0.11 9.71 -38.89 -0.38 -0.26 16 24 C -0.20 -1.92 10.07 -39.42 -0.40 -2.32 16 25 C 0.33 3.82 8.41 -17.22 -0.14 3.67 16 26 F -0.11 -1.27 17.29 2.25 0.04 -1.23 16 27 N -0.52 -6.56 10.36 -13.22 -0.14 -6.69 16 28 C 0.18 2.00 10.71 -17.14 -0.18 1.82 16 29 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.50 8.01 -51.93 -0.42 0.08 16 33 H 0.08 0.68 7.81 -51.92 -0.41 0.27 16 34 H 0.06 0.69 7.94 -51.93 -0.41 0.28 16 35 H 0.10 1.80 5.92 -51.93 -0.31 1.49 16 36 H 0.02 0.20 8.13 -51.93 -0.42 -0.22 16 37 H 0.09 1.44 6.66 -51.93 -0.35 1.09 16 38 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 39 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.40 3.88 6.64 -40.82 -0.27 3.61 16 42 H 0.16 1.52 7.73 -52.49 -0.41 1.12 16 43 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.17 1.49 6.42 -52.49 -0.34 1.15 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -33.54 377.59 -6.93 -40.47 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -5.60 Total: 12.04 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: -1.45 Total: 12.11 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.75 Total: -61.62 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: 0.16 Total: -23.62 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.54 -6.93 -40.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569108037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.452 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds