Wall clock time and date at job start Tue Mar 31 2020 20:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47670 * 2 1 4 4 C 1.52996 * 109.47730 * 120.00478 * 2 1 3 5 5 N 1.46903 * 109.47571 * 175.15885 * 4 2 1 6 6 C 1.46895 * 111.00139 * 198.92784 * 5 4 2 7 7 C 1.46907 * 110.99519 * 74.97548 * 5 4 2 8 8 C 1.50697 * 109.46628 * 190.00223 * 7 5 4 9 9 O 1.21290 * 120.00211 * 359.97438 * 8 7 5 10 10 N 1.34780 * 119.99895 * 180.02562 * 8 7 5 11 11 C 1.37095 * 120.00355 * 180.02562 * 10 8 7 12 12 H 1.08005 * 119.99419 * 359.97438 * 11 10 8 13 13 C 1.38945 * 120.00151 * 179.97438 * 11 10 8 14 14 N 1.31406 * 120.00182 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99968 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46975 * 60.00093 * 15 13 11 17 17 H 1.48502 * 109.47276 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47268 * 300.00513 * 15 13 11 19 19 N 1.46502 * 109.47152 * 240.00371 * 2 1 3 20 20 C 1.34781 * 119.99952 * 82.98177 * 19 2 1 21 21 O 1.21563 * 119.99814 * 0.02562 * 20 19 2 22 22 C 1.47730 * 119.99740 * 180.02562 * 20 19 2 23 23 C 1.40153 * 120.52545 * 180.02562 * 22 20 19 24 24 C 1.38160 * 118.32165 * 179.97438 * 23 22 20 25 25 C 1.38752 * 119.28259 * 0.02562 * 24 23 22 26 26 F 1.35098 * 119.49229 * 179.97438 * 25 24 23 27 27 N 1.32150 * 121.01740 * 0.02562 * 25 24 23 28 28 C 1.31695 * 121.83833 * 359.97438 * 27 25 24 29 29 H 1.09008 * 109.46287 * 299.99572 * 1 2 3 30 30 H 1.08991 * 109.47094 * 59.99554 * 1 2 3 31 31 H 1.08999 * 109.47234 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47409 * 295.16409 * 4 2 1 33 33 H 1.09007 * 109.47009 * 55.15989 * 4 2 1 34 34 H 1.08996 * 109.47177 * 54.12076 * 6 5 4 35 35 H 1.08995 * 109.47248 * 174.12394 * 6 5 4 36 36 H 1.09005 * 109.46938 * 294.12224 * 6 5 4 37 37 H 1.08994 * 109.46748 * 309.99847 * 7 5 4 38 38 H 1.08994 * 109.47235 * 69.99982 * 7 5 4 39 39 H 0.97002 * 119.99903 * 359.97438 * 10 8 7 40 40 H 0.97003 * 120.00278 * 179.97438 * 14 13 11 41 41 H 0.96999 * 120.00619 * 262.99160 * 19 2 1 42 42 H 1.07998 * 120.84091 * 359.96454 * 23 22 20 43 43 H 1.07998 * 120.35619 * 180.02562 * 24 23 22 44 44 H 1.07996 * 119.69800 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5045 -0.8233 1.1920 6 6 3.9954 -1.8668 2.1020 7 6 4.1342 0.4709 1.4866 8 6 5.6079 0.3934 1.1814 9 8 6.0866 -0.6385 0.7605 10 7 6.3941 1.4704 1.3772 11 6 7.7347 1.4002 1.0991 12 1 8.1608 0.4815 0.7235 13 6 8.5452 2.5107 1.3005 14 7 8.0268 3.6281 1.7580 15 14 10.3720 2.4147 0.9222 16 1 10.5636 2.0863 -0.5133 17 1 11.0087 3.7227 1.2205 18 1 10.9960 1.3585 1.7592 19 7 2.0183 -0.6905 -1.1962 20 6 2.1085 -0.0286 -2.3668 21 8 1.7850 1.1415 -2.4299 22 6 2.6004 -0.7251 -3.5732 23 6 2.6991 -0.0474 -4.7960 24 6 3.1654 -0.7428 -5.8950 25 6 3.5173 -2.0776 -5.7543 26 9 3.9732 -2.7617 -6.8263 27 7 3.4123 -2.6902 -4.5882 28 6 2.9731 -2.0682 -3.5137 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.7493 -0.1600 2.1371 33 1 1.6077 -1.7210 1.2935 34 1 3.4880 -2.8067 1.8844 35 1 5.0692 -1.9933 1.9642 36 1 3.7931 -1.5748 3.1325 37 1 3.6761 1.2459 0.8722 38 1 3.9934 0.7120 2.5402 39 1 6.0113 2.2955 1.7142 40 1 8.5926 4.4033 1.8989 41 1 2.2766 -1.6241 -1.1459 42 1 2.4177 0.9921 -4.8772 43 1 3.2551 -0.2527 -6.8532 44 1 2.9008 -2.6027 -2.5780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569108037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:21 Heat of formation + Delta-G solvation = -90.627006 kcal Electronic energy + Delta-G solvation = -29207.555869 eV Core-core repulsion = 24880.974559 eV Total energy + Delta-G solvation = -4326.581310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.20987 -41.70182 -40.51663 -39.99334 -38.23394 -36.15385 -35.57424 -33.87791 -33.26874 -33.11658 -31.12939 -29.56543 -27.93214 -26.59680 -25.76953 -25.03336 -23.70198 -22.31974 -21.62965 -20.85550 -19.84481 -19.44334 -18.87756 -18.41391 -17.84705 -17.26937 -17.09955 -16.63231 -16.57473 -16.21161 -15.93446 -15.86632 -15.54604 -15.31746 -15.09621 -15.03071 -14.71239 -14.36091 -14.20595 -14.14717 -13.93850 -13.67483 -13.42585 -13.33618 -13.06375 -12.87721 -12.81601 -12.59938 -12.46448 -12.36683 -12.13936 -11.68667 -11.43037 -11.35137 -11.23755 -10.77432 -10.30713 -10.24657 -9.99636 -9.95496 -9.18250 -8.46059 -5.94543 -0.66082 -0.05540 1.38483 1.40043 1.50832 1.67634 2.07188 2.10825 2.28163 2.33922 2.59610 2.80448 3.20967 3.27999 3.39802 3.56048 3.65873 3.80616 3.86470 4.14587 4.17295 4.22446 4.36902 4.43233 4.46891 4.54003 4.61908 4.68991 4.71196 4.75163 4.81268 4.86057 4.87587 5.10758 5.27720 5.34550 5.35082 5.40736 5.53247 5.88812 6.07967 6.24112 6.34874 6.53420 6.61220 7.13802 7.18377 7.57852 8.13591 8.71329 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008365 B = 0.003441 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3346.517344 B = 8134.746127 C =10102.169142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 H 0.061 0.939 4 C 0.047 3.953 5 N -0.530 5.530 6 C 0.027 3.973 7 C 0.058 3.942 8 C 0.443 3.557 9 O -0.609 6.609 10 N -0.578 5.578 11 C -0.331 4.331 12 H 0.079 0.921 13 C -0.013 4.013 14 N -0.922 5.922 15 Si 0.990 3.010 16 H -0.274 1.274 17 H -0.271 1.271 18 H -0.270 1.270 19 N -0.689 5.689 20 C 0.565 3.435 21 O -0.574 6.574 22 C -0.205 4.205 23 C 0.006 3.994 24 C -0.185 4.185 25 C 0.312 3.688 26 F -0.112 7.112 27 N -0.539 5.539 28 C 0.179 3.821 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.027 0.973 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.394 0.606 40 H 0.277 0.723 41 H 0.411 0.589 42 H 0.167 0.833 43 H 0.187 0.813 44 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.908 -8.419 -6.481 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.081 4.081 5 N -0.254 5.254 6 C -0.120 4.120 7 C -0.074 4.074 8 C 0.230 3.770 9 O -0.495 6.495 10 N -0.215 5.215 11 C -0.461 4.461 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.563 5.563 15 Si 0.814 3.186 16 H -0.199 1.199 17 H -0.195 1.195 18 H -0.195 1.195 19 N -0.339 5.339 20 C 0.351 3.649 21 O -0.455 6.455 22 C -0.210 4.210 23 C -0.020 4.020 24 C -0.206 4.206 25 C 0.159 3.841 26 F -0.091 7.091 27 N -0.254 5.254 28 C 0.021 3.979 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.130 0.870 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.227 0.773 40 H 0.086 0.914 41 H 0.249 0.751 42 H 0.185 0.815 43 H 0.204 0.796 44 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -17.346 -9.147 -7.188 20.886 hybrid contribution 0.888 1.156 0.547 1.557 sum -16.458 -7.991 -6.640 19.463 Atomic orbital electron populations 1.22061 0.92802 1.03463 1.02724 1.21082 0.94872 0.96397 0.83690 0.92066 1.22599 0.86251 1.03013 0.96207 1.61492 1.05657 1.04448 1.53850 1.22445 1.01786 0.94822 0.92985 1.21739 0.91201 0.93687 1.00727 1.20771 0.89431 0.83911 0.82894 1.90452 1.76609 1.31349 1.51090 1.41959 1.07992 1.12935 1.58638 1.19600 0.84562 0.99172 1.42743 0.90316 1.26003 1.04471 0.94237 0.96541 1.69668 1.38362 1.02664 1.45614 0.85033 0.77046 0.77818 0.78715 1.19943 1.19508 1.19530 1.45677 1.64901 1.15523 1.07838 1.18003 0.77390 0.85853 0.83607 1.90760 1.51674 1.17187 1.85913 1.21106 1.07502 0.96456 0.95932 1.21856 0.89349 1.01256 0.89552 1.22070 1.03112 0.92433 1.02978 1.18686 0.93934 0.88340 0.83103 1.91635 1.85639 1.80634 1.51159 1.67001 1.17783 1.41198 0.99412 1.23009 0.88736 0.90381 0.95800 0.89908 0.93531 0.90328 0.91296 0.87032 0.89097 0.92917 0.95429 0.88890 0.91441 0.77312 0.91377 0.75125 0.81520 0.79581 0.79193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.46 71.98 0.68 -1.58 16 2 C 0.14 2.89 2.55 44.99 0.11 3.00 16 3 H 0.06 1.60 6.41 -2.38 -0.02 1.59 16 4 C 0.05 0.83 4.54 86.30 0.39 1.22 16 5 N -0.53 -14.44 4.16 -927.07 -3.86 -18.30 16 6 C 0.03 0.73 9.17 127.69 1.17 1.90 16 7 C 0.06 1.93 5.28 85.55 0.45 2.39 16 8 C 0.44 20.79 7.52 87.66 0.66 21.45 16 9 O -0.61 -32.52 13.88 -3.06 -0.04 -32.56 16 10 N -0.58 -29.95 5.29 -306.99 -1.62 -31.57 16 11 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 12 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 13 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 14 N -0.92 -50.54 13.05 21.66 0.28 -50.26 16 15 Si 0.99 43.52 29.55 68.60 2.03 45.54 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 19 N -0.69 -14.73 4.78 -445.52 -2.13 -16.86 16 20 C 0.56 14.90 7.72 86.75 0.67 15.57 16 21 O -0.57 -18.92 16.10 -3.91 -0.06 -18.99 16 22 C -0.20 -4.76 5.89 -20.00 -0.12 -4.87 16 23 C 0.01 0.12 9.71 22.72 0.22 0.34 16 24 C -0.19 -3.32 10.07 22.37 0.23 -3.09 16 25 C 0.31 7.08 8.41 84.77 0.71 7.79 16 26 F -0.11 -2.54 17.29 44.97 0.78 -1.76 16 27 N -0.54 -13.47 10.36 -195.73 -2.03 -15.49 16 28 C 0.18 3.90 10.71 85.02 0.91 4.81 16 29 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.05 0.89 8.13 -2.39 -0.02 0.87 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.05 8.01 -2.39 -0.02 1.03 16 33 H 0.11 1.34 7.81 -2.38 -0.02 1.32 16 34 H 0.09 1.82 7.94 -2.39 -0.02 1.80 16 35 H 0.05 1.92 5.92 -2.39 -0.01 1.91 16 36 H 0.03 0.66 8.13 -2.38 -0.02 0.64 16 37 H 0.09 3.03 6.66 -2.39 -0.02 3.02 16 38 H 0.07 2.01 8.11 -2.39 -0.02 1.99 16 39 H 0.39 19.65 7.90 -92.71 -0.73 18.92 16 40 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 41 H 0.41 7.17 6.64 -92.71 -0.62 6.55 16 42 H 0.17 3.12 7.73 -2.91 -0.02 3.10 16 43 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 44 H 0.19 3.11 6.42 -2.91 -0.02 3.09 16 Total: -1.00 -74.97 377.59 0.43 -74.54 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.28 Total: 35.19 kcal Atomic # 6 Polarization: 23.16 SS G_CDS: 7.37 Total: 30.53 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -9.36 Total: -132.49 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: -0.11 Total: -51.55 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.78 Total: -1.76 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -74.97 0.43 -74.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569108037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.088 kcal (2) G-P(sol) polarization free energy of solvation -74.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds