Wall clock time and date at job start Tue Mar 31 2020 20:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.46980 * 2 1 4 4 C 1.53001 * 109.47048 * 240.00423 * 2 1 3 5 5 N 1.46901 * 109.47221 * 185.18409 * 4 2 1 6 6 C 1.46900 * 110.99785 * 163.93065 * 5 4 2 7 7 C 1.46896 * 110.99937 * 287.89014 * 5 4 2 8 8 C 1.50702 * 109.47034 * 170.00085 * 7 5 4 9 9 O 1.21286 * 119.99769 * 359.97438 * 8 7 5 10 10 N 1.34775 * 119.99543 * 179.97438 * 8 7 5 11 11 C 1.37104 * 119.99638 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99867 * 0.02562 * 11 10 8 13 13 C 1.38945 * 119.99927 * 179.97438 * 11 10 8 14 14 N 1.31417 * 120.00192 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00372 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47127 * 89.98992 * 15 13 11 17 17 H 1.48494 * 109.47383 * 209.99721 * 15 13 11 18 18 H 1.48503 * 109.46486 * 329.99453 * 15 13 11 19 19 N 1.46496 * 109.47426 * 120.00094 * 2 1 3 20 20 C 1.34781 * 119.99809 * 274.60634 * 19 2 1 21 21 O 1.21569 * 119.99966 * 359.97438 * 20 19 2 22 22 C 1.47733 * 119.99838 * 179.97438 * 20 19 2 23 23 C 1.40141 * 120.52870 * 180.02562 * 22 20 19 24 24 C 1.38154 * 118.32309 * 179.70706 * 23 22 20 25 25 C 1.38760 * 119.28319 * 0.51692 * 24 23 22 26 26 F 1.35095 * 119.49284 * 179.74849 * 25 24 23 27 27 N 1.32143 * 121.01280 * 359.47401 * 25 24 23 28 28 C 1.31694 * 121.84038 * 0.27305 * 27 25 24 29 29 H 1.09005 * 109.47732 * 59.99542 * 1 2 3 30 30 H 1.09003 * 109.47404 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47112 * 299.99992 * 1 2 3 32 32 H 1.09009 * 109.46751 * 305.18459 * 4 2 1 33 33 H 1.09001 * 109.47500 * 65.18036 * 4 2 1 34 34 H 1.08996 * 109.46953 * 54.89795 * 6 5 4 35 35 H 1.09001 * 109.46962 * 174.89420 * 6 5 4 36 36 H 1.09001 * 109.47308 * 294.89257 * 6 5 4 37 37 H 1.09005 * 109.46456 * 289.99729 * 7 5 4 38 38 H 1.08993 * 109.47605 * 49.99474 * 7 5 4 39 39 H 0.96993 * 120.00622 * 359.97438 * 10 8 7 40 40 H 0.97001 * 120.00101 * 180.02562 * 14 13 11 41 41 H 0.97000 * 120.00257 * 94.60357 * 19 2 1 42 42 H 1.07998 * 120.84211 * 359.97438 * 23 22 20 43 43 H 1.07998 * 120.36310 * 180.26806 * 24 23 22 44 44 H 1.07999 * 119.69901 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5036 -0.8305 -1.1884 6 6 3.9974 -1.8270 -2.1482 7 6 4.1387 0.4751 -1.4113 8 6 5.6103 0.3773 -1.1014 9 8 6.0832 -0.6762 -0.7308 10 7 6.4007 1.4607 -1.2360 11 6 7.7394 1.3719 -0.9536 12 1 8.1605 0.4337 -0.6236 13 6 8.5543 2.4885 -1.0929 14 7 9.8376 2.4033 -0.8226 15 14 7.8261 4.1111 -1.6643 16 1 7.3762 4.8942 -0.4855 17 1 8.8556 4.8815 -2.4070 18 1 6.6673 3.8471 -2.5548 19 7 2.0183 -0.6906 1.1961 20 6 2.1546 -0.0163 2.3551 21 8 1.8727 1.1651 2.4078 22 6 2.6466 -0.7128 3.5615 23 6 2.7920 -0.0227 4.7725 24 6 3.2499 -0.7202 5.8735 25 6 3.5587 -2.0668 5.7437 26 9 4.0117 -2.7517 6.8164 27 7 3.4114 -2.6907 4.5881 28 6 2.9735 -2.0683 3.5134 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6027 -1.7186 -1.2970 33 1 1.7544 -0.1565 -2.1369 34 1 3.6342 -1.5814 -3.1461 35 1 5.0874 -1.8234 -2.1472 36 1 3.6371 -2.8155 -1.8634 37 1 4.0055 0.7710 -2.4520 38 1 3.6790 1.2188 -0.7605 39 1 6.0225 2.3031 -1.5327 40 1 10.4065 3.1830 -0.9195 41 1 2.2436 -1.6331 1.1540 42 1 2.5481 1.0269 4.8443 43 1 3.3701 -0.2220 6.8241 44 1 2.8658 -2.6122 2.5866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569108038.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:24 Heat of formation + Delta-G solvation = -57.519778 kcal Electronic energy + Delta-G solvation = -29333.637966 eV Core-core repulsion = 25008.492293 eV Total energy + Delta-G solvation = -4325.145673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.31121 -40.79952 -39.41989 -38.67586 -37.05970 -34.91739 -33.85336 -32.99909 -32.24587 -31.67831 -30.29486 -28.29025 -27.07936 -24.90484 -24.61053 -24.18331 -22.57657 -21.31744 -20.64384 -19.34132 -18.56831 -18.29428 -17.95977 -17.52918 -16.36783 -16.26942 -16.13363 -15.45877 -15.26676 -15.01138 -14.87424 -14.68471 -14.27920 -14.23671 -13.82331 -13.70383 -13.49609 -13.30460 -13.21797 -13.15068 -12.93651 -12.58419 -12.44599 -12.24493 -12.03750 -11.85148 -11.62814 -11.33105 -11.14435 -10.77093 -10.59276 -10.39982 -10.37576 -9.98068 -9.83214 -9.53943 -9.39528 -9.09237 -8.59566 -8.18691 -8.05403 -6.31376 -3.82732 0.22924 0.77688 2.61670 2.97189 3.02271 3.07701 3.15316 3.19270 3.49315 3.72376 3.85192 4.10235 4.10941 4.39666 4.46401 4.51744 4.64203 4.82092 4.97076 5.00340 5.09847 5.20887 5.23219 5.29127 5.40840 5.47517 5.51924 5.54282 5.59621 5.66151 5.78963 5.82473 5.85451 5.94475 5.99364 6.17457 6.35729 6.42791 7.06556 7.19118 7.22314 7.41130 7.57801 8.09825 8.14029 8.59623 8.94838 9.42245 9.82678 10.81686 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008750 B = 0.003539 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.225184 B = 7910.157237 C = 9476.807803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.090 0.910 4 C 0.042 3.958 5 N -0.516 5.516 6 C 0.023 3.977 7 C 0.040 3.960 8 C 0.453 3.547 9 O -0.559 6.559 10 N -0.591 5.591 11 C -0.304 4.304 12 H 0.119 0.881 13 C 0.042 3.958 14 N -0.881 5.881 15 Si 0.878 3.122 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.270 1.270 19 N -0.698 5.698 20 C 0.570 3.430 21 O -0.538 6.538 22 C -0.194 4.194 23 C 0.011 3.989 24 C -0.201 4.201 25 C 0.328 3.672 26 F -0.108 7.108 27 N -0.515 5.515 28 C 0.180 3.820 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.015 0.985 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.403 0.597 42 H 0.159 0.841 43 H 0.155 0.845 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.128 -5.193 4.891 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.108 0.892 4 C -0.087 4.087 5 N -0.240 5.240 6 C -0.125 4.125 7 C -0.092 4.092 8 C 0.239 3.761 9 O -0.441 6.441 10 N -0.230 5.230 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.521 5.521 15 Si 0.705 3.295 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.196 1.196 19 N -0.348 5.348 20 C 0.356 3.644 21 O -0.416 6.416 22 C -0.199 4.199 23 C -0.015 4.015 24 C -0.222 4.222 25 C 0.175 3.825 26 F -0.087 7.087 27 N -0.229 5.229 28 C 0.021 3.979 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.202 0.798 40 H 0.084 0.916 41 H 0.239 0.761 42 H 0.177 0.823 43 H 0.173 0.827 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -20.422 -6.033 5.642 22.029 hybrid contribution -0.453 1.926 -1.050 2.240 sum -20.875 -4.107 4.592 21.765 Atomic orbital electron populations 1.22153 0.94842 1.02262 1.02779 1.21018 0.93399 0.97837 0.83716 0.89180 1.22511 0.89102 1.01059 0.96025 1.61551 1.03148 1.07193 1.52110 1.22536 1.03978 0.94513 0.91480 1.21957 0.95334 0.91888 1.00005 1.19592 0.86978 0.85022 0.84508 1.90525 1.75222 1.28463 1.49905 1.42218 1.09264 1.10250 1.61272 1.19411 0.81070 1.00209 1.42587 0.86296 1.25026 0.95298 0.98056 0.97686 1.69623 1.03866 1.30738 1.47894 0.86694 0.79197 0.84245 0.79398 1.19547 1.20172 1.19550 1.45644 1.66287 1.14042 1.08862 1.17774 0.77523 0.86352 0.82770 1.90782 1.50805 1.15051 1.84988 1.21049 1.07028 0.95847 0.96013 1.21632 0.89295 1.00993 0.89557 1.21836 1.05087 0.93259 1.01997 1.18414 0.93352 0.87434 0.83310 1.91647 1.85531 1.80499 1.51036 1.67012 1.16343 1.40715 0.98872 1.22750 0.89331 0.90560 0.95229 0.91502 0.92284 0.91767 0.89990 0.93144 0.96646 0.88586 0.91889 0.93305 0.89365 0.79770 0.91622 0.76120 0.82336 0.82682 0.81128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.49 37.15 0.35 -0.94 16 2 C 0.15 1.48 2.52 -67.93 -0.17 1.31 16 3 H 0.09 1.12 6.22 -51.93 -0.32 0.80 16 4 C 0.04 0.41 4.53 -3.82 -0.02 0.39 16 5 N -0.52 -7.15 4.17 -244.37 -1.02 -8.17 16 6 C 0.02 0.31 9.19 60.06 0.55 0.86 16 7 C 0.04 0.64 5.30 -4.98 -0.03 0.61 16 8 C 0.45 10.06 7.42 -10.99 -0.08 9.98 16 9 O -0.56 -14.38 13.96 5.55 0.08 -14.30 16 10 N -0.59 -14.05 5.09 -10.96 -0.06 -14.10 16 11 C -0.30 -8.59 10.16 -14.93 -0.15 -8.74 16 12 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 13 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 14 N -0.88 -25.83 13.96 55.50 0.77 -25.05 16 15 Si 0.88 19.54 27.74 -169.99 -4.71 14.82 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -5.46 6.52 56.52 0.37 -5.10 16 19 N -0.70 -7.51 4.75 -54.79 -0.26 -7.77 16 20 C 0.57 7.35 7.75 -12.38 -0.10 7.25 16 21 O -0.54 -8.49 16.07 5.31 0.09 -8.40 16 22 C -0.19 -2.26 5.89 -104.83 -0.62 -2.88 16 23 C 0.01 0.12 9.71 -38.90 -0.38 -0.26 16 24 C -0.20 -1.93 10.07 -39.42 -0.40 -2.33 16 25 C 0.33 3.86 8.41 -17.22 -0.14 3.71 16 26 F -0.11 -1.28 17.29 2.25 0.04 -1.24 16 27 N -0.52 -6.56 10.36 -13.22 -0.14 -6.70 16 28 C 0.18 1.99 10.71 -17.14 -0.18 1.81 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.65 8.00 -51.92 -0.42 0.23 16 33 H 0.05 0.45 8.05 -51.93 -0.42 0.03 16 34 H 0.02 0.18 8.13 -51.93 -0.42 -0.24 16 35 H 0.10 1.72 5.79 -51.93 -0.30 1.42 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 38 H 0.09 1.34 6.50 -51.93 -0.34 1.01 16 39 H 0.37 7.82 5.76 -40.82 -0.24 7.59 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.40 3.67 6.67 -40.82 -0.27 3.40 16 42 H 0.16 1.51 7.73 -52.49 -0.41 1.10 16 43 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.17 1.45 6.42 -52.49 -0.34 1.12 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -34.86 374.46 -6.58 -41.44 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -5.56 Total: 11.97 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: -1.46 Total: 11.86 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.70 Total: -61.80 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: 0.16 Total: -22.70 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.86 -6.58 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569108038.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.075 kcal (2) G-P(sol) polarization free energy of solvation -34.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds