Wall clock time and date at job start Tue Mar 31 2020 20:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.46980 * 2 1 4 4 C 1.53001 * 109.47048 * 240.00423 * 2 1 3 5 5 N 1.46901 * 109.47221 * 185.18409 * 4 2 1 6 6 C 1.46900 * 110.99785 * 163.93065 * 5 4 2 7 7 C 1.46896 * 110.99937 * 287.89014 * 5 4 2 8 8 C 1.50702 * 109.47034 * 170.00085 * 7 5 4 9 9 O 1.21286 * 119.99769 * 359.97438 * 8 7 5 10 10 N 1.34775 * 119.99543 * 179.97438 * 8 7 5 11 11 C 1.37104 * 119.99638 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99867 * 0.02562 * 11 10 8 13 13 C 1.38945 * 119.99927 * 179.97438 * 11 10 8 14 14 N 1.31417 * 120.00192 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00372 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47127 * 89.98992 * 15 13 11 17 17 H 1.48494 * 109.47383 * 209.99721 * 15 13 11 18 18 H 1.48503 * 109.46486 * 329.99453 * 15 13 11 19 19 N 1.46496 * 109.47426 * 120.00094 * 2 1 3 20 20 C 1.34781 * 119.99809 * 274.60634 * 19 2 1 21 21 O 1.21569 * 119.99966 * 359.97438 * 20 19 2 22 22 C 1.47733 * 119.99838 * 179.97438 * 20 19 2 23 23 C 1.40141 * 120.52870 * 180.02562 * 22 20 19 24 24 C 1.38154 * 118.32309 * 179.70706 * 23 22 20 25 25 C 1.38760 * 119.28319 * 0.51692 * 24 23 22 26 26 F 1.35095 * 119.49284 * 179.74849 * 25 24 23 27 27 N 1.32143 * 121.01280 * 359.47401 * 25 24 23 28 28 C 1.31694 * 121.84038 * 0.27305 * 27 25 24 29 29 H 1.09005 * 109.47732 * 59.99542 * 1 2 3 30 30 H 1.09003 * 109.47404 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47112 * 299.99992 * 1 2 3 32 32 H 1.09009 * 109.46751 * 305.18459 * 4 2 1 33 33 H 1.09001 * 109.47500 * 65.18036 * 4 2 1 34 34 H 1.08996 * 109.46953 * 54.89795 * 6 5 4 35 35 H 1.09001 * 109.46962 * 174.89420 * 6 5 4 36 36 H 1.09001 * 109.47308 * 294.89257 * 6 5 4 37 37 H 1.09005 * 109.46456 * 289.99729 * 7 5 4 38 38 H 1.08993 * 109.47605 * 49.99474 * 7 5 4 39 39 H 0.96993 * 120.00622 * 359.97438 * 10 8 7 40 40 H 0.97001 * 120.00101 * 180.02562 * 14 13 11 41 41 H 0.97000 * 120.00257 * 94.60357 * 19 2 1 42 42 H 1.07998 * 120.84211 * 359.97438 * 23 22 20 43 43 H 1.07998 * 120.36310 * 180.26806 * 24 23 22 44 44 H 1.07999 * 119.69901 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5036 -0.8305 -1.1884 6 6 3.9974 -1.8270 -2.1482 7 6 4.1387 0.4751 -1.4113 8 6 5.6103 0.3773 -1.1014 9 8 6.0832 -0.6762 -0.7308 10 7 6.4007 1.4607 -1.2360 11 6 7.7394 1.3719 -0.9536 12 1 8.1605 0.4337 -0.6236 13 6 8.5543 2.4885 -1.0929 14 7 9.8376 2.4033 -0.8226 15 14 7.8261 4.1111 -1.6643 16 1 7.3762 4.8942 -0.4855 17 1 8.8556 4.8815 -2.4070 18 1 6.6673 3.8471 -2.5548 19 7 2.0183 -0.6906 1.1961 20 6 2.1546 -0.0163 2.3551 21 8 1.8727 1.1651 2.4078 22 6 2.6466 -0.7128 3.5615 23 6 2.7920 -0.0227 4.7725 24 6 3.2499 -0.7202 5.8735 25 6 3.5587 -2.0668 5.7437 26 9 4.0117 -2.7517 6.8164 27 7 3.4114 -2.6907 4.5881 28 6 2.9735 -2.0683 3.5134 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6027 -1.7186 -1.2970 33 1 1.7544 -0.1565 -2.1369 34 1 3.6342 -1.5814 -3.1461 35 1 5.0874 -1.8234 -2.1472 36 1 3.6371 -2.8155 -1.8634 37 1 4.0055 0.7710 -2.4520 38 1 3.6790 1.2188 -0.7605 39 1 6.0225 2.3031 -1.5327 40 1 10.4065 3.1830 -0.9195 41 1 2.2436 -1.6331 1.1540 42 1 2.5481 1.0269 4.8443 43 1 3.3701 -0.2220 6.8241 44 1 2.8658 -2.6122 2.5866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569108038.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:24 Heat of formation + Delta-G solvation = -85.616172 kcal Electronic energy + Delta-G solvation = -29334.856317 eV Core-core repulsion = 25008.492293 eV Total energy + Delta-G solvation = -4326.364024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.21473 -41.70284 -40.61758 -40.03885 -38.27180 -36.18326 -35.60013 -33.87978 -33.74730 -33.11411 -31.13239 -29.71593 -27.93612 -26.47980 -25.76671 -25.03590 -23.65304 -22.28698 -21.63190 -21.14966 -20.14320 -19.44351 -18.87952 -18.41593 -17.83868 -17.27354 -17.13100 -16.76743 -16.65772 -16.18441 -15.90931 -15.76511 -15.58667 -15.22305 -15.12969 -14.93215 -14.72190 -14.40398 -14.29234 -14.21153 -14.14548 -13.94089 -13.53631 -13.37132 -13.13574 -12.88369 -12.80763 -12.65534 -12.42622 -12.39506 -11.99209 -11.66345 -11.45807 -11.35048 -11.24037 -10.77321 -10.34399 -10.29627 -10.22558 -9.95416 -9.18736 -8.41789 -6.01783 -0.66229 -0.05488 1.27700 1.33790 1.41624 1.67606 1.97024 2.11098 2.21389 2.33881 2.59596 2.66299 3.14317 3.22182 3.29434 3.55998 3.65719 3.79677 3.85975 4.07101 4.15988 4.21113 4.34741 4.34986 4.45697 4.51189 4.61059 4.68945 4.71323 4.75810 4.82132 4.86082 4.88530 5.11169 5.25852 5.34468 5.36348 5.51691 5.54964 5.90133 6.02191 6.22170 6.34941 6.53038 6.59765 6.88990 7.18025 7.40591 7.97842 8.75895 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008750 B = 0.003539 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.225184 B = 7910.157237 C = 9476.807803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.142 3.858 3 H 0.068 0.932 4 C 0.048 3.952 5 N -0.533 5.533 6 C 0.028 3.972 7 C 0.053 3.947 8 C 0.453 3.547 9 O -0.600 6.600 10 N -0.596 5.596 11 C -0.324 4.324 12 H 0.056 0.944 13 C -0.014 4.014 14 N -0.935 5.935 15 Si 0.960 3.040 16 H -0.261 1.261 17 H -0.273 1.273 18 H -0.232 1.232 19 N -0.690 5.690 20 C 0.566 3.434 21 O -0.573 6.573 22 C -0.205 4.205 23 C 0.006 3.994 24 C -0.186 4.186 25 C 0.311 3.689 26 F -0.112 7.112 27 N -0.541 5.541 28 C 0.178 3.822 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.387 0.613 40 H 0.278 0.722 41 H 0.411 0.589 42 H 0.169 0.831 43 H 0.186 0.814 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.490 -3.992 3.515 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.037 3.963 3 H 0.086 0.914 4 C -0.079 4.079 5 N -0.258 5.258 6 C -0.120 4.120 7 C -0.078 4.078 8 C 0.240 3.760 9 O -0.483 6.483 10 N -0.238 5.238 11 C -0.453 4.453 12 H 0.074 0.926 13 C -0.212 4.212 14 N -0.576 5.576 15 Si 0.780 3.220 16 H -0.186 1.186 17 H -0.198 1.198 18 H -0.155 1.155 19 N -0.340 5.340 20 C 0.353 3.647 21 O -0.454 6.454 22 C -0.210 4.210 23 C -0.020 4.020 24 C -0.207 4.207 25 C 0.158 3.842 26 F -0.091 7.091 27 N -0.255 5.255 28 C 0.020 3.980 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.127 0.873 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.222 0.778 40 H 0.088 0.912 41 H 0.248 0.752 42 H 0.186 0.814 43 H 0.204 0.796 44 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -23.823 -4.875 4.245 24.684 hybrid contribution 0.599 1.376 -0.576 1.608 sum -23.224 -3.499 3.669 23.771 Atomic orbital electron populations 1.22065 0.92808 1.03418 1.02777 1.21134 0.94909 0.96664 0.83552 0.91377 1.22600 0.85967 1.03028 0.96348 1.61475 1.05684 1.05945 1.52687 1.22405 1.00960 0.95772 0.92834 1.21821 0.90331 0.93788 1.01877 1.20878 0.89496 0.83694 0.81890 1.90514 1.76839 1.30082 1.50883 1.42086 1.07709 1.11678 1.62346 1.18980 0.83626 0.98511 1.44225 0.92557 1.26048 0.95397 1.02677 0.97098 1.69802 1.05937 1.32526 1.49328 0.85432 0.79511 0.77366 0.79661 1.18554 1.19842 1.15518 1.45687 1.65330 1.14402 1.08601 1.17954 0.77215 0.86029 0.83512 1.90757 1.52604 1.16414 1.85583 1.21124 1.07558 0.96189 0.96178 1.21859 0.89088 1.01533 0.89517 1.22077 1.03381 0.92249 1.02981 1.18699 0.94016 0.88288 0.83155 1.91633 1.85671 1.80703 1.51124 1.66990 1.17241 1.41669 0.99620 1.23023 0.88874 0.90548 0.95569 0.89741 0.90524 0.93543 0.87261 0.90919 0.94459 0.93436 0.89766 0.90398 0.87955 0.77837 0.91221 0.75166 0.81402 0.79636 0.79172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.49 71.98 0.68 -1.25 16 2 C 0.14 2.48 2.52 44.99 0.11 2.60 16 3 H 0.07 1.53 6.22 -2.39 -0.01 1.52 16 4 C 0.05 0.73 4.53 86.30 0.39 1.12 16 5 N -0.53 -13.36 4.17 -927.04 -3.87 -17.23 16 6 C 0.03 0.71 9.19 127.69 1.17 1.88 16 7 C 0.05 1.58 5.30 85.56 0.45 2.03 16 8 C 0.45 20.14 7.42 87.66 0.65 20.79 16 9 O -0.60 -32.02 13.96 -3.05 -0.04 -32.06 16 10 N -0.60 -28.39 5.09 -306.99 -1.56 -29.95 16 11 C -0.32 -19.11 10.16 84.04 0.85 -18.26 16 12 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 13 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 14 N -0.93 -56.93 13.96 21.66 0.30 -56.63 16 15 Si 0.96 39.58 27.74 68.60 1.90 41.49 16 16 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.23 -8.06 6.52 99.48 0.65 -7.41 16 19 N -0.69 -13.62 4.75 -445.52 -2.11 -15.73 16 20 C 0.57 14.19 7.75 86.75 0.67 14.86 16 21 O -0.57 -17.81 16.07 -3.93 -0.06 -17.88 16 22 C -0.21 -4.68 5.89 -20.00 -0.12 -4.80 16 23 C 0.01 0.12 9.71 22.71 0.22 0.34 16 24 C -0.19 -3.40 10.07 22.37 0.23 -3.17 16 25 C 0.31 7.23 8.41 84.77 0.71 7.94 16 26 F -0.11 -2.64 17.29 44.97 0.78 -1.86 16 27 N -0.54 -13.73 10.36 -195.73 -2.03 -15.76 16 28 C 0.18 3.88 10.71 85.02 0.91 4.79 16 29 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.11 1.14 8.00 -2.38 -0.02 1.12 16 33 H 0.07 0.87 8.05 -2.39 -0.02 0.85 16 34 H 0.04 0.77 8.13 -2.39 -0.02 0.75 16 35 H 0.05 1.70 5.79 -2.39 -0.01 1.68 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 1.91 8.12 -2.38 -0.02 1.89 16 38 H 0.10 2.83 6.50 -2.39 -0.02 2.81 16 39 H 0.39 15.54 5.76 -92.71 -0.53 15.01 16 40 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.41 6.65 6.67 -92.71 -0.62 6.03 16 42 H 0.17 3.07 7.73 -2.91 -0.02 3.05 16 43 H 0.19 2.12 8.06 -2.91 -0.02 2.09 16 44 H 0.19 3.08 6.42 -2.91 -0.02 3.06 16 Total: -1.00 -82.60 374.46 0.57 -82.04 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: -0.15 Total: 35.00 kcal Atomic # 6 Polarization: 21.17 SS G_CDS: 7.41 Total: 28.57 kcal Atomic # 7 Polarization: -126.03 SS G_CDS: -9.27 Total: -135.30 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -0.11 Total: -49.94 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.86 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 1.90 Total: 41.49 kcal Total: -82.60 0.57 -82.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569108038.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.578 kcal (2) G-P(sol) polarization free energy of solvation -82.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds