Wall clock time and date at job start Tue Mar 31 2020 20:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47140 * 2 1 4 4 C 1.52997 * 109.47288 * 239.99462 * 2 1 3 5 5 N 1.46898 * 109.47022 * 185.00355 * 4 2 1 6 6 C 1.46908 * 111.00050 * 293.95365 * 5 4 2 7 7 C 1.46895 * 110.99837 * 170.00511 * 5 4 2 8 8 C 1.50702 * 109.47231 * 189.99836 * 7 5 4 9 9 O 1.21287 * 119.99806 * 359.97438 * 8 7 5 10 10 N 1.34771 * 120.00442 * 179.97438 * 8 7 5 11 11 C 1.37101 * 120.00448 * 179.97438 * 10 8 7 12 12 H 1.07996 * 119.99618 * 0.02562 * 11 10 8 13 13 C 1.38947 * 120.00283 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00279 * 180.02562 * 13 11 10 15 15 Si 1.86808 * 119.99857 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47237 * 90.00251 * 15 13 11 17 17 H 1.48499 * 109.47097 * 210.00032 * 15 13 11 18 18 H 1.48501 * 109.46998 * 329.99843 * 15 13 11 19 19 N 1.46506 * 109.46637 * 119.99498 * 2 1 3 20 20 C 1.34771 * 120.00260 * 274.99960 * 19 2 1 21 21 O 1.21530 * 120.00095 * 0.02562 * 20 19 2 22 22 C 1.47999 * 119.99962 * 180.02562 * 20 19 2 23 23 N 1.32809 * 119.75457 * 359.97263 * 22 20 19 24 24 C 1.31428 * 121.67052 * 179.74908 * 23 22 20 25 25 C 1.38681 * 120.97836 * 0.54929 * 24 23 22 26 26 C 1.38451 * 119.39296 * 359.46544 * 25 24 23 27 27 C 1.38956 * 118.46990 * 0.25395 * 26 25 24 28 28 F 1.35103 * 120.50685 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.47236 * 59.99820 * 1 2 3 30 30 H 1.08992 * 109.47575 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47268 * 300.00531 * 1 2 3 32 32 H 1.08999 * 109.47389 * 305.00500 * 4 2 1 33 33 H 1.08998 * 109.46820 * 65.00195 * 4 2 1 34 34 H 1.09003 * 109.46847 * 60.00316 * 6 5 4 35 35 H 1.08995 * 109.47194 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47172 * 300.00707 * 6 5 4 37 37 H 1.08999 * 109.47058 * 309.99686 * 7 5 4 38 38 H 1.09001 * 109.47785 * 69.99872 * 7 5 4 39 39 H 0.97008 * 119.99968 * 0.02562 * 10 8 7 40 40 H 0.96999 * 119.99627 * 179.97438 * 14 13 11 41 41 H 0.97006 * 119.99641 * 95.00636 * 19 2 1 42 42 H 1.07994 * 119.51413 * 180.28661 * 24 23 22 43 43 H 1.08002 * 120.30561 * 179.74935 * 25 24 23 44 44 H 1.08005 * 120.76284 * 180.27759 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5040 -0.8268 -1.1902 6 6 4.1311 0.4992 -1.2718 7 6 4.0107 -1.7145 -2.2452 8 6 5.4724 -1.9939 -2.0075 9 8 6.0366 -1.5015 -1.0534 10 7 6.1527 -2.7908 -2.8551 11 6 7.4826 -3.0446 -2.6392 12 1 7.9849 -2.6062 -1.7896 13 6 8.1841 -3.8658 -3.5134 14 7 9.4587 -4.1094 -3.3061 15 14 7.3153 -4.6236 -4.9833 16 1 7.4244 -3.7092 -6.1482 17 1 7.9478 -5.9255 -5.3151 18 1 5.8831 -4.8385 -4.6550 19 7 2.0182 -0.6906 1.1963 20 6 2.1469 -0.0182 2.3572 21 8 1.8575 1.1609 2.4118 22 6 2.6406 -0.7157 3.5655 23 7 2.9550 -2.0044 3.5005 24 6 3.4014 -2.6596 4.5487 25 6 3.5516 -2.0282 5.7743 26 6 3.2364 -0.6850 5.8899 27 6 2.7719 -0.0144 4.7650 28 9 2.4526 1.2967 4.8312 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6053 -1.7199 -1.2951 33 1 1.7516 -0.1584 -2.1369 34 1 3.7911 1.1138 -0.4382 35 1 5.2147 0.3921 -1.2255 36 1 3.8524 0.9757 -2.2118 37 1 3.4544 -2.6517 -2.2296 38 1 3.8858 -1.2340 -3.2156 39 1 5.7016 -3.1844 -3.6185 40 1 9.9482 -4.6830 -3.9162 41 1 2.2489 -1.6318 1.1528 42 1 3.6509 -3.7061 4.4554 43 1 3.9156 -2.5781 6.6296 44 1 3.3493 -0.1703 6.8327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569143468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:13 Heat of formation + Delta-G solvation = -59.078912 kcal Electronic energy + Delta-G solvation = -29233.264263 eV Core-core repulsion = 24908.050981 eV Total energy + Delta-G solvation = -4325.213282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.10311 -40.64681 -39.40019 -38.64972 -37.03181 -34.76783 -33.81975 -33.05559 -31.66902 -31.57052 -30.57435 -28.17453 -26.94814 -25.31909 -24.69296 -23.79415 -22.63258 -21.32937 -20.32165 -19.32984 -18.42027 -18.18487 -17.82766 -17.33397 -16.24052 -16.19184 -16.09152 -15.63056 -15.32741 -14.95307 -14.84282 -14.57087 -14.34119 -14.08443 -13.92375 -13.60638 -13.45478 -13.38987 -13.23096 -12.88749 -12.72745 -12.51824 -12.39404 -12.13067 -11.98253 -11.79263 -11.45290 -11.34403 -11.01470 -10.76963 -10.59331 -10.42062 -10.29726 -9.96944 -9.78555 -9.52596 -9.32034 -8.97082 -8.55651 -8.17027 -7.95534 -6.30262 -3.81473 0.25331 0.71099 2.60727 2.97259 3.02485 3.06650 3.15003 3.53898 3.72933 3.75921 3.87580 3.94974 4.10721 4.31648 4.46426 4.51721 4.71683 4.79970 4.98981 5.07303 5.17594 5.23547 5.31404 5.38430 5.42758 5.45973 5.55288 5.58485 5.60075 5.65713 5.87396 5.88279 5.90696 5.98153 6.06124 6.20129 6.49564 6.55745 7.15553 7.28148 7.29787 7.59661 7.63112 8.15981 8.20191 8.61660 8.96723 9.43770 9.85575 10.82991 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012738 B = 0.002867 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.630668 B = 9763.957796 C =11147.532445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.090 0.910 4 C 0.043 3.957 5 N -0.514 5.514 6 C 0.020 3.980 7 C 0.043 3.957 8 C 0.454 3.546 9 O -0.557 6.557 10 N -0.592 5.592 11 C -0.303 4.303 12 H 0.119 0.881 13 C 0.041 3.959 14 N -0.883 5.883 15 Si 0.879 3.121 16 H -0.272 1.272 17 H -0.277 1.277 18 H -0.269 1.269 19 N -0.681 5.681 20 C 0.571 3.429 21 O -0.532 6.532 22 C 0.052 3.948 23 N -0.424 5.424 24 C 0.091 3.909 25 C -0.121 4.121 26 C -0.121 4.121 27 C 0.107 3.893 28 F -0.107 7.107 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.016 0.984 37 H 0.089 0.911 38 H 0.048 0.952 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.416 0.584 42 H 0.172 0.828 43 H 0.151 0.849 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.953 2.940 12.092 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.108 0.892 4 C -0.086 4.086 5 N -0.238 5.238 6 C -0.128 4.128 7 C -0.089 4.089 8 C 0.239 3.761 9 O -0.438 6.438 10 N -0.232 5.232 11 C -0.432 4.432 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.523 5.523 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.195 1.195 19 N -0.332 5.332 20 C 0.355 3.645 21 O -0.409 6.409 22 C -0.088 4.088 23 N -0.135 5.135 24 C -0.070 4.070 25 C -0.141 4.141 26 C -0.147 4.147 27 C 0.084 3.916 28 F -0.085 7.085 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.034 0.966 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.202 0.798 40 H 0.083 0.917 41 H 0.253 0.747 42 H 0.189 0.811 43 H 0.169 0.831 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.566 3.456 12.304 22.540 hybrid contribution -0.433 -0.275 -1.200 1.305 sum -18.999 3.180 11.104 22.234 Atomic orbital electron populations 1.22152 0.94876 1.02336 1.02677 1.21020 0.93451 0.97755 0.83740 0.89215 1.22498 0.89132 1.00976 0.95975 1.61550 1.03209 1.12317 1.46742 1.22580 1.03066 0.88411 0.98707 1.21909 0.96146 0.97785 0.93039 1.19636 0.87598 0.83660 0.85183 1.90538 1.69766 1.52976 1.30517 1.42215 1.10924 1.44806 1.25283 1.19416 0.83037 1.27977 1.12740 0.86331 1.25030 0.95561 0.97446 0.98145 1.69622 1.07537 1.37392 1.37733 0.86676 0.79528 0.79925 0.83273 1.19725 1.20220 1.19481 1.45590 1.64628 1.14999 1.07951 1.17597 0.78237 0.85945 0.82744 1.90827 1.50627 1.14713 1.84708 1.21432 1.02586 0.91211 0.93557 1.67669 1.07822 1.06324 1.31671 1.22963 0.95409 1.00961 0.87649 1.22332 0.97769 0.94110 0.99916 1.21712 0.99152 0.95446 0.98411 1.18672 0.98650 0.79818 0.94493 1.91619 1.89349 1.30865 1.96654 0.91506 0.92211 0.91824 0.90120 0.93339 0.91996 0.88574 0.96598 0.89270 0.93358 0.79780 0.91660 0.74729 0.81060 0.83141 0.82881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.48 37.15 0.35 -1.19 16 2 C 0.15 1.72 2.35 -67.93 -0.16 1.56 16 3 H 0.09 1.22 6.23 -51.93 -0.32 0.90 16 4 C 0.04 0.49 4.52 -3.83 -0.02 0.47 16 5 N -0.51 -7.96 4.22 -244.37 -1.03 -9.00 16 6 C 0.02 0.33 8.96 60.07 0.54 0.87 16 7 C 0.04 0.69 5.45 -4.98 -0.03 0.67 16 8 C 0.45 10.14 7.48 -10.99 -0.08 10.06 16 9 O -0.56 -14.71 13.91 5.55 0.08 -14.63 16 10 N -0.59 -13.94 5.09 -10.97 -0.06 -14.00 16 11 C -0.30 -8.51 10.16 -14.93 -0.15 -8.66 16 12 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 13 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 14 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 15 Si 0.88 19.23 27.74 -169.99 -4.71 14.51 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 19 N -0.68 -9.08 4.79 -54.70 -0.26 -9.34 16 20 C 0.57 8.66 7.77 -12.26 -0.10 8.56 16 21 O -0.53 -9.33 14.98 5.34 0.08 -9.25 16 22 C 0.05 0.71 6.75 -82.95 -0.56 0.14 16 23 N -0.42 -5.25 9.54 -9.76 -0.09 -5.34 16 24 C 0.09 0.81 11.18 -17.56 -0.20 0.62 16 25 C -0.12 -0.85 10.11 -39.34 -0.40 -1.25 16 26 C -0.12 -1.03 10.16 -39.24 -0.40 -1.42 16 27 C 0.11 1.32 7.32 -38.82 -0.28 1.03 16 28 F -0.11 -1.51 15.55 2.25 0.04 -1.47 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 33 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 34 H 0.06 0.99 6.58 -51.93 -0.34 0.65 16 35 H 0.10 1.93 5.82 -51.93 -0.30 1.63 16 36 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.09 1.24 7.93 -51.93 -0.41 0.83 16 38 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 39 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.42 5.47 7.93 -40.82 -0.32 5.15 16 42 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.15 0.52 8.06 -52.49 -0.42 0.09 16 44 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 374.55 15.07 5.64 5.64 Total: -1.00 -35.46 374.55 -6.83 -42.29 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -5.71 Total: 13.06 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: -1.58 Total: 12.47 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -0.67 Total: -62.63 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.16 Total: -23.88 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.46 -6.83 -42.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569143468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.786 kcal (2) G-P(sol) polarization free energy of solvation -35.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds