Wall clock time and date at job start Tue Mar 31 2020 20:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47140 * 2 1 4 4 C 1.52997 * 109.47288 * 239.99462 * 2 1 3 5 5 N 1.46898 * 109.47022 * 185.00355 * 4 2 1 6 6 C 1.46908 * 111.00050 * 293.95365 * 5 4 2 7 7 C 1.46895 * 110.99837 * 170.00511 * 5 4 2 8 8 C 1.50702 * 109.47231 * 189.99836 * 7 5 4 9 9 O 1.21287 * 119.99806 * 359.97438 * 8 7 5 10 10 N 1.34771 * 120.00442 * 179.97438 * 8 7 5 11 11 C 1.37101 * 120.00448 * 179.97438 * 10 8 7 12 12 H 1.07996 * 119.99618 * 0.02562 * 11 10 8 13 13 C 1.38947 * 120.00283 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00279 * 180.02562 * 13 11 10 15 15 Si 1.86808 * 119.99857 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47237 * 90.00251 * 15 13 11 17 17 H 1.48499 * 109.47097 * 210.00032 * 15 13 11 18 18 H 1.48501 * 109.46998 * 329.99843 * 15 13 11 19 19 N 1.46506 * 109.46637 * 119.99498 * 2 1 3 20 20 C 1.34771 * 120.00260 * 274.99960 * 19 2 1 21 21 O 1.21530 * 120.00095 * 0.02562 * 20 19 2 22 22 C 1.47999 * 119.99962 * 180.02562 * 20 19 2 23 23 N 1.32809 * 119.75457 * 359.97263 * 22 20 19 24 24 C 1.31428 * 121.67052 * 179.74908 * 23 22 20 25 25 C 1.38681 * 120.97836 * 0.54929 * 24 23 22 26 26 C 1.38451 * 119.39296 * 359.46544 * 25 24 23 27 27 C 1.38956 * 118.46990 * 0.25395 * 26 25 24 28 28 F 1.35103 * 120.50685 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.47236 * 59.99820 * 1 2 3 30 30 H 1.08992 * 109.47575 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47268 * 300.00531 * 1 2 3 32 32 H 1.08999 * 109.47389 * 305.00500 * 4 2 1 33 33 H 1.08998 * 109.46820 * 65.00195 * 4 2 1 34 34 H 1.09003 * 109.46847 * 60.00316 * 6 5 4 35 35 H 1.08995 * 109.47194 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47172 * 300.00707 * 6 5 4 37 37 H 1.08999 * 109.47058 * 309.99686 * 7 5 4 38 38 H 1.09001 * 109.47785 * 69.99872 * 7 5 4 39 39 H 0.97008 * 119.99968 * 0.02562 * 10 8 7 40 40 H 0.96999 * 119.99627 * 179.97438 * 14 13 11 41 41 H 0.97006 * 119.99641 * 95.00636 * 19 2 1 42 42 H 1.07994 * 119.51413 * 180.28661 * 24 23 22 43 43 H 1.08002 * 120.30561 * 179.74935 * 25 24 23 44 44 H 1.08005 * 120.76284 * 180.27759 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5040 -0.8268 -1.1902 6 6 4.1311 0.4992 -1.2718 7 6 4.0107 -1.7145 -2.2452 8 6 5.4724 -1.9939 -2.0075 9 8 6.0366 -1.5015 -1.0534 10 7 6.1527 -2.7908 -2.8551 11 6 7.4826 -3.0446 -2.6392 12 1 7.9849 -2.6062 -1.7896 13 6 8.1841 -3.8658 -3.5134 14 7 9.4587 -4.1094 -3.3061 15 14 7.3153 -4.6236 -4.9833 16 1 7.4244 -3.7092 -6.1482 17 1 7.9478 -5.9255 -5.3151 18 1 5.8831 -4.8385 -4.6550 19 7 2.0182 -0.6906 1.1963 20 6 2.1469 -0.0182 2.3572 21 8 1.8575 1.1609 2.4118 22 6 2.6406 -0.7157 3.5655 23 7 2.9550 -2.0044 3.5005 24 6 3.4014 -2.6596 4.5487 25 6 3.5516 -2.0282 5.7743 26 6 3.2364 -0.6850 5.8899 27 6 2.7719 -0.0144 4.7650 28 9 2.4526 1.2967 4.8312 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6053 -1.7199 -1.2951 33 1 1.7516 -0.1584 -2.1369 34 1 3.7911 1.1138 -0.4382 35 1 5.2147 0.3921 -1.2255 36 1 3.8524 0.9757 -2.2118 37 1 3.4544 -2.6517 -2.2296 38 1 3.8858 -1.2340 -3.2156 39 1 5.7016 -3.1844 -3.6185 40 1 9.9482 -4.6830 -3.9162 41 1 2.2489 -1.6318 1.1528 42 1 3.6509 -3.7061 4.4554 43 1 3.9156 -2.5781 6.6296 44 1 3.3493 -0.1703 6.8327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569143468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:13 Heat of formation + Delta-G solvation = -88.459959 kcal Electronic energy + Delta-G solvation = -29234.538321 eV Core-core repulsion = 24908.050981 eV Total energy + Delta-G solvation = -4326.487340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.06952 -41.55173 -40.59072 -40.10019 -38.33284 -36.16238 -35.57989 -33.84545 -33.71873 -32.46517 -31.46644 -29.62266 -28.02374 -26.59413 -26.07373 -24.60323 -23.85741 -22.34300 -21.35418 -21.21160 -20.14051 -19.30107 -18.70267 -18.20449 -17.75132 -17.23633 -17.07829 -16.81670 -16.63498 -16.42735 -16.07897 -15.76370 -15.53406 -15.28180 -15.02279 -14.90199 -14.78094 -14.36779 -14.33283 -14.20319 -14.08628 -13.62423 -13.49432 -13.37809 -13.16685 -12.89696 -12.80582 -12.67214 -12.46121 -12.36118 -11.96280 -11.75653 -11.44163 -11.42956 -11.02561 -10.68500 -10.35068 -10.23937 -10.19989 -9.94181 -9.19799 -8.38702 -5.99181 -0.57833 -0.02521 1.31841 1.37551 1.46392 1.64271 2.01063 2.03215 2.25270 2.61459 2.66353 2.91203 3.10190 3.17936 3.27180 3.61452 3.68075 3.77252 3.87411 4.09081 4.18379 4.30064 4.36961 4.39710 4.45821 4.52330 4.56652 4.58781 4.69664 4.77236 4.78976 4.80164 4.90416 5.01425 5.15871 5.27733 5.48474 5.50574 5.55868 5.91200 6.01801 6.17051 6.38695 6.63427 6.67642 6.92478 7.13554 7.44045 8.02861 8.79212 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012738 B = 0.002867 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.630668 B = 9763.957796 C =11147.532445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.141 3.859 3 H 0.066 0.934 4 C 0.050 3.950 5 N -0.536 5.536 6 C 0.031 3.969 7 C 0.055 3.945 8 C 0.451 3.549 9 O -0.606 6.606 10 N -0.593 5.593 11 C -0.325 4.325 12 H 0.052 0.948 13 C -0.017 4.017 14 N -0.937 5.937 15 Si 0.965 3.035 16 H -0.260 1.260 17 H -0.277 1.277 18 H -0.228 1.228 19 N -0.676 5.676 20 C 0.561 3.439 21 O -0.570 6.570 22 C 0.018 3.982 23 N -0.449 5.449 24 C 0.083 3.917 25 C -0.097 4.097 26 C -0.114 4.114 27 C 0.079 3.921 28 F -0.126 7.126 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.039 0.961 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.389 0.611 40 H 0.278 0.722 41 H 0.416 0.584 42 H 0.201 0.799 43 H 0.199 0.801 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.855 0.666 10.954 24.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.037 3.963 3 H 0.084 0.916 4 C -0.078 4.078 5 N -0.260 5.260 6 C -0.117 4.117 7 C -0.075 4.075 8 C 0.239 3.761 9 O -0.490 6.490 10 N -0.235 5.235 11 C -0.454 4.454 12 H 0.070 0.930 13 C -0.215 4.215 14 N -0.578 5.578 15 Si 0.785 3.215 16 H -0.184 1.184 17 H -0.202 1.202 18 H -0.151 1.151 19 N -0.325 5.325 20 C 0.346 3.654 21 O -0.450 6.450 22 C -0.119 4.119 23 N -0.160 5.160 24 C -0.078 4.078 25 C -0.117 4.117 26 C -0.140 4.140 27 C 0.056 3.944 28 F -0.105 7.105 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.125 0.875 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.145 0.855 38 H 0.099 0.901 39 H 0.225 0.775 40 H 0.088 0.912 41 H 0.254 0.746 42 H 0.218 0.782 43 H 0.216 0.784 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -21.514 1.184 11.151 24.261 hybrid contribution 0.566 0.432 -0.647 0.962 sum -20.948 1.616 10.504 23.489 Atomic orbital electron populations 1.22061 0.92748 1.03398 1.02766 1.21156 0.95031 0.96528 0.83610 0.91626 1.22578 0.86077 1.02847 0.96292 1.61430 1.05753 1.11555 1.47257 1.22330 1.00256 0.89473 0.99679 1.21854 0.91202 0.99977 0.94511 1.20957 0.90145 0.81424 0.83564 1.90535 1.71676 1.54215 1.32573 1.42028 1.09278 1.45719 1.26496 1.18970 0.85471 1.29192 1.11794 0.92957 1.26117 0.96217 0.97272 1.01874 1.69813 1.09942 1.38417 1.39662 0.85359 0.80116 0.78397 0.77603 1.18412 1.20169 1.15077 1.45653 1.63949 1.14900 1.08016 1.18003 0.77877 0.85751 0.83790 1.90780 1.52568 1.16211 1.85468 1.21292 1.04940 0.92175 0.93539 1.67623 1.09002 1.05846 1.33508 1.23656 0.94188 1.02209 0.87740 1.22852 0.94936 0.93361 1.00505 1.22145 0.97567 0.96086 0.98202 1.19094 1.00190 0.79376 0.95714 1.91559 1.89842 1.32281 1.96795 0.89298 0.90579 0.93847 0.87465 0.90748 0.92620 0.93096 0.94288 0.85536 0.90150 0.77510 0.91247 0.74640 0.78189 0.78393 0.79770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.48 71.98 0.68 -1.95 16 2 C 0.14 3.24 2.35 44.99 0.11 3.34 16 3 H 0.07 1.83 6.23 -2.39 -0.01 1.82 16 4 C 0.05 0.97 4.52 86.30 0.39 1.36 16 5 N -0.54 -15.68 4.22 -927.05 -3.92 -19.60 16 6 C 0.03 1.01 8.96 127.69 1.14 2.16 16 7 C 0.06 1.61 5.45 85.56 0.47 2.08 16 8 C 0.45 20.09 7.48 87.66 0.66 20.74 16 9 O -0.61 -33.61 13.91 -3.05 -0.04 -33.65 16 10 N -0.59 -27.55 5.09 -307.00 -1.56 -29.12 16 11 C -0.32 -18.99 10.16 84.04 0.85 -18.13 16 12 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 13 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 14 N -0.94 -56.61 13.96 21.66 0.30 -56.30 16 15 Si 0.97 38.33 27.74 68.60 1.90 40.23 16 16 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 17 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.23 -7.46 6.52 99.48 0.65 -6.81 16 19 N -0.68 -18.36 4.79 -445.27 -2.13 -20.49 16 20 C 0.56 18.11 7.77 86.83 0.67 18.79 16 21 O -0.57 -21.61 14.98 -3.81 -0.06 -21.67 16 22 C 0.02 0.52 6.75 41.91 0.28 0.80 16 23 N -0.45 -11.14 9.54 -184.79 -1.76 -12.90 16 24 C 0.08 1.34 11.18 84.86 0.95 2.29 16 25 C -0.10 -1.07 10.11 22.43 0.23 -0.84 16 26 C -0.11 -1.75 10.16 22.49 0.23 -1.53 16 27 C 0.08 2.03 7.32 22.76 0.17 2.20 16 28 F -0.13 -3.83 15.55 44.97 0.70 -3.13 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.11 1.60 7.93 -2.39 -0.02 1.58 16 33 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 34 H 0.06 1.86 6.58 -2.39 -0.02 1.85 16 35 H 0.05 2.15 5.82 -2.39 -0.01 2.13 16 36 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.13 2.83 7.93 -2.39 -0.02 2.82 16 38 H 0.08 1.92 8.12 -2.39 -0.02 1.90 16 39 H 0.39 14.80 5.76 -92.70 -0.53 14.26 16 40 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.42 10.96 7.93 -92.70 -0.74 10.23 16 42 H 0.20 1.89 8.06 -2.91 -0.02 1.87 16 43 H 0.20 0.30 8.06 -2.91 -0.02 0.27 16 44 H 0.19 1.58 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -88.58 374.55 0.46 -88.12 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: -0.27 Total: 37.64 kcal Atomic # 6 Polarization: 23.57 SS G_CDS: 7.29 Total: 30.86 kcal Atomic # 7 Polarization: -129.33 SS G_CDS: -9.07 Total: -138.41 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: -0.10 Total: -55.32 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.70 Total: -3.13 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 1.90 Total: 40.23 kcal Total: -88.58 0.46 -88.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569143468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.336 kcal (2) G-P(sol) polarization free energy of solvation -88.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds