Wall clock time and date at job start Tue Mar 31 2020 20:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08998 * 109.47483 * 2 1 4 4 C 1.50702 * 109.47225 * 120.00519 * 2 1 3 5 5 O 1.21276 * 120.00810 * 119.99578 * 4 2 1 6 6 N 1.34783 * 119.99469 * 299.99717 * 4 2 1 7 7 C 1.46501 * 119.99684 * 174.69370 * 6 4 2 8 8 C 1.53005 * 109.54376 * 304.13762 * 7 6 4 9 9 N 1.46500 * 109.47195 * 305.58401 * 8 7 6 10 10 C 1.36937 * 120.00363 * 175.02344 * 9 8 7 11 11 H 1.08003 * 119.99442 * 359.97438 * 10 9 8 12 12 C 1.38813 * 120.00166 * 179.97438 * 10 9 8 13 13 N 1.31617 * 120.00163 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99878 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46905 * 89.99712 * 14 12 10 16 16 H 1.48500 * 109.47342 * 210.00158 * 14 12 10 17 17 H 1.48503 * 109.46983 * 330.00251 * 14 12 10 18 18 C 1.53183 * 109.54045 * 183.96409 * 7 6 4 19 19 C 1.53277 * 109.06225 * 297.02550 * 18 7 6 20 20 O 1.42905 * 109.46314 * 302.45081 * 19 18 7 21 21 C 1.42901 * 114.09888 * 61.15426 * 20 19 18 22 22 C 1.53095 * 109.41477 * 298.84381 * 21 20 19 23 23 C 1.50703 * 109.47195 * 239.99861 * 2 1 3 24 24 C 1.33388 * 125.20141 * 119.99722 * 23 2 1 25 25 C 1.38427 * 114.92134 * 179.97438 * 24 23 2 26 26 C 1.33391 * 114.91686 * 0.02562 * 25 24 23 27 27 S 1.75876 * 125.20479 * 299.70021 * 23 2 1 28 28 H 1.09002 * 109.47220 * 300.00091 * 1 2 3 29 29 H 1.09004 * 109.47064 * 59.99771 * 1 2 3 30 30 H 1.08994 * 109.47769 * 179.97438 * 1 2 3 31 31 H 0.96996 * 120.00197 * 354.69324 * 6 4 2 32 32 H 1.09000 * 109.47117 * 65.57851 * 8 7 6 33 33 H 1.08996 * 109.47338 * 185.58314 * 8 7 6 34 34 H 0.97003 * 120.00058 * 355.01452 * 9 8 7 35 35 H 0.96995 * 119.99855 * 180.02562 * 13 12 10 36 36 H 1.08996 * 109.52220 * 57.01847 * 18 7 6 37 37 H 1.08998 * 109.51636 * 177.20823 * 18 7 6 38 38 H 1.08996 * 109.45995 * 182.45042 * 19 18 7 39 39 H 1.08996 * 109.46543 * 62.45169 * 19 18 7 40 40 H 1.08998 * 109.47970 * 178.86116 * 21 20 19 41 41 H 1.08998 * 109.49151 * 58.83589 * 21 20 19 42 42 H 1.08994 * 109.52221 * 297.69971 * 22 21 20 43 43 H 1.09003 * 109.56706 * 177.54569 * 22 21 20 44 44 H 1.07999 * 122.54070 * 0.02562 * 24 23 2 45 45 H 1.08000 * 122.53736 * 180.02562 * 25 24 23 46 46 H 1.07996 * 125.19651 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.0963 -1.0044 3.6484 8 6 1.5543 -2.4319 3.5514 9 7 0.1082 -2.3906 3.3206 10 6 -0.5831 -3.5514 3.0975 11 1 -0.0621 -4.4974 3.0913 12 6 -1.9535 -3.5122 2.8793 13 7 -2.5884 -2.3593 2.8874 14 14 -2.8963 -5.0956 2.5743 15 1 -3.3689 -5.6476 3.8693 16 1 -4.0635 -4.8162 1.6997 17 1 -2.0059 -6.0820 1.9113 18 6 1.5238 -0.3225 4.8949 19 6 2.1341 1.0775 5.0246 20 8 3.5579 0.9723 5.0875 21 6 4.1513 0.3842 3.9281 22 6 3.6239 -1.0425 3.7547 23 6 2.0323 -0.7104 -1.2305 24 6 2.8023 -0.1646 -2.1730 25 6 3.1404 -1.0128 -3.2134 26 6 2.6443 -2.2472 -3.1161 27 16 1.6990 -2.3882 -1.6397 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.2144 0.5808 2.5451 32 1 2.0395 -2.9494 2.7239 33 1 1.7587 -2.9622 4.4815 34 1 -0.3597 -1.5409 3.3259 35 1 -3.5460 -2.3320 2.7353 36 1 0.4407 -0.2429 4.8015 37 1 1.7719 -0.9109 5.7783 38 1 1.7642 1.5521 5.9333 39 1 1.8519 1.6783 4.1600 40 1 5.2345 0.3594 4.0471 41 1 3.8957 0.9757 3.0490 42 1 3.9143 -1.6453 4.6150 43 1 4.0414 -1.4782 2.8469 44 1 3.1375 0.8610 -2.1273 45 1 3.7589 -0.6988 -4.0413 46 1 2.8026 -3.0399 -3.8322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570305899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:23 Heat of formation + Delta-G solvation = -34.990287 kcal Electronic energy + Delta-G solvation = -28935.333226 eV Core-core repulsion = 25145.084930 eV Total energy + Delta-G solvation = -3790.248296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.55443 -38.68669 -37.44034 -35.73130 -33.85613 -33.56470 -31.34863 -31.03663 -30.36573 -28.30750 -26.53499 -24.64361 -23.74702 -23.53315 -22.95976 -21.47358 -20.54635 -19.22581 -18.88897 -17.47243 -17.21844 -16.33938 -15.99751 -15.89404 -15.46389 -15.23069 -14.85266 -14.48853 -14.23851 -14.05175 -13.63786 -13.25135 -13.15800 -12.87431 -12.73007 -12.55429 -12.38180 -12.25913 -12.08125 -11.98254 -11.74077 -11.53088 -11.42796 -11.22708 -11.16246 -10.90339 -10.81715 -10.49676 -10.30712 -10.27820 -10.06108 -9.69898 -9.50539 -9.23178 -8.79412 -8.54595 -8.44799 -8.09074 -6.85561 -5.74983 -3.00636 1.21798 1.93559 2.34920 2.88184 3.02999 3.44299 3.50408 3.51866 3.55100 3.95391 4.60637 4.68079 4.79492 5.00003 5.03520 5.08769 5.14954 5.19985 5.24696 5.28503 5.35814 5.45599 5.60841 5.64831 5.68196 5.74990 5.77130 5.92612 5.95062 6.01935 6.06783 6.11057 6.24036 6.25904 6.32111 6.44467 6.47702 6.52199 6.56323 6.65304 6.88926 7.07890 7.25983 7.74542 7.87417 8.44591 8.62780 9.56621 10.13355 10.49868 11.48003 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007236 B = 0.006362 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3868.458360 B = 4399.860500 C = 7329.171901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 H 0.103 0.897 4 C 0.528 3.472 5 O -0.520 6.520 6 N -0.712 5.712 7 C 0.176 3.824 8 C 0.142 3.858 9 N -0.723 5.723 10 C -0.227 4.227 11 H 0.067 0.933 12 C -0.013 4.013 13 N -0.935 5.935 14 Si 0.901 3.099 15 H -0.291 1.291 16 H -0.292 1.292 17 H -0.283 1.283 18 C -0.155 4.155 19 C 0.061 3.939 20 O -0.386 6.386 21 C 0.067 3.933 22 C -0.163 4.163 23 C -0.152 4.152 24 C -0.150 4.150 25 C -0.140 4.140 26 C -0.239 4.239 27 S 0.172 5.828 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.394 0.606 32 H 0.050 0.950 33 H 0.019 0.981 34 H 0.381 0.619 35 H 0.253 0.747 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.113 9.925 -5.495 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.064 4.064 3 H 0.121 0.879 4 C 0.313 3.687 5 O -0.395 6.395 6 N -0.364 5.364 7 C 0.090 3.910 8 C 0.014 3.986 9 N -0.367 5.367 10 C -0.359 4.359 11 H 0.085 0.915 12 C -0.209 4.209 13 N -0.585 5.585 14 Si 0.733 3.267 15 H -0.219 1.219 16 H -0.219 1.219 17 H -0.209 1.209 18 C -0.193 4.193 19 C -0.016 4.016 20 O -0.305 6.305 21 C -0.010 4.010 22 C -0.202 4.202 23 C -0.271 4.271 24 C -0.180 4.180 25 C -0.171 4.171 26 C -0.376 4.376 27 S 0.439 5.561 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.228 0.772 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.215 0.785 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.150 0.850 45 H 0.149 0.851 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.855 7.867 -4.769 14.229 hybrid contribution -0.415 0.774 -1.078 1.390 sum 10.440 8.641 -5.847 14.760 Atomic orbital electron populations 1.21803 0.90776 1.04607 1.02568 1.19836 0.98242 0.99045 0.89306 0.87896 1.20120 0.79898 0.84556 0.84082 1.90655 1.36959 1.25558 1.86306 1.45870 1.58758 1.26497 1.05273 1.20558 0.93288 0.93485 0.83663 1.21073 0.86921 0.91726 0.98909 1.42178 1.01169 1.06964 1.86398 1.19201 0.90122 0.86892 1.39643 0.91502 1.24622 0.96463 0.96541 1.03250 1.69629 1.08316 1.23022 1.57530 0.86266 0.79681 0.83194 0.77593 1.21897 1.21871 1.20853 1.22471 1.02154 0.96664 0.97978 1.22628 0.81028 0.96150 1.01751 1.87896 1.19967 1.81839 1.40787 1.22498 0.97538 0.93023 0.87929 1.22549 0.95699 0.97706 1.04240 1.23994 1.04970 0.98070 1.00016 1.19956 1.01579 1.01238 0.95265 1.19969 1.03441 0.93290 1.00378 1.25779 1.07155 1.01465 1.03167 1.84869 1.48489 1.08605 1.14185 0.91149 0.91797 0.90611 0.77217 0.93181 0.96372 0.78491 0.93764 0.89183 0.89594 0.88861 0.93595 0.89379 0.93534 0.90534 0.88777 0.84995 0.85069 0.82490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.02 37.15 0.34 -1.70 16 2 C -0.04 -0.57 3.10 -92.93 -0.29 -0.86 16 3 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 4 C 0.53 8.59 6.53 -10.98 -0.07 8.52 16 5 O -0.52 -10.03 11.54 5.56 0.06 -9.96 16 6 N -0.71 -10.44 3.61 -47.43 -0.17 -10.61 16 7 C 0.18 2.77 0.32 -131.63 -0.04 2.73 16 8 C 0.14 2.92 4.79 -4.04 -0.02 2.90 16 9 N -0.72 -17.42 5.21 -59.91 -0.31 -17.73 16 10 C -0.23 -6.27 9.99 -15.06 -0.15 -6.42 16 11 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 12 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 13 N -0.94 -27.02 13.06 55.49 0.72 -26.29 16 14 Si 0.90 22.48 29.55 -169.99 -5.02 17.45 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 18 C -0.15 -2.20 4.84 -26.49 -0.13 -2.33 16 19 C 0.06 0.73 6.67 37.30 0.25 0.98 16 20 O -0.39 -5.16 10.77 -35.23 -0.38 -5.54 16 21 C 0.07 0.84 6.68 37.21 0.25 1.08 16 22 C -0.16 -2.35 4.82 -26.59 -0.13 -2.48 16 23 C -0.15 -2.25 4.61 -36.00 -0.17 -2.42 16 24 C -0.15 -1.94 10.01 -41.21 -0.41 -2.36 16 25 C -0.14 -1.73 10.18 -41.21 -0.42 -2.15 16 26 C -0.24 -3.17 11.23 29.04 0.33 -2.84 16 27 S 0.17 2.79 22.17 -107.50 -2.38 0.41 16 28 H 0.07 0.98 7.69 -51.93 -0.40 0.58 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.40 8.01 -51.93 -0.42 0.98 16 31 H 0.39 4.93 6.99 -40.82 -0.29 4.65 16 32 H 0.05 1.15 6.25 -51.93 -0.32 0.83 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.38 9.33 6.51 -40.82 -0.27 9.07 16 35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.09 1.41 7.22 -51.93 -0.37 1.03 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.49 7.01 -51.93 -0.36 0.12 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.56 7.75 -51.93 -0.40 0.16 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.09 1.51 6.26 -51.93 -0.33 1.18 16 44 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 46 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -31.67 376.46 -9.50 -41.17 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -6.93 Total: 13.26 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -0.76 Total: -7.83 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.24 Total: -54.64 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.32 Total: -15.50 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.38 Total: 0.41 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.67 -9.50 -41.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570305899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.176 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds