Wall clock time and date at job start Tue Mar 31 2020 20:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08998 * 109.47483 * 2 1 4 4 C 1.50702 * 109.47225 * 120.00519 * 2 1 3 5 5 O 1.21276 * 120.00810 * 119.99578 * 4 2 1 6 6 N 1.34783 * 119.99469 * 299.99717 * 4 2 1 7 7 C 1.46501 * 119.99684 * 174.69370 * 6 4 2 8 8 C 1.53005 * 109.54376 * 304.13762 * 7 6 4 9 9 N 1.46500 * 109.47195 * 305.58401 * 8 7 6 10 10 C 1.36937 * 120.00363 * 175.02344 * 9 8 7 11 11 H 1.08003 * 119.99442 * 359.97438 * 10 9 8 12 12 C 1.38813 * 120.00166 * 179.97438 * 10 9 8 13 13 N 1.31617 * 120.00163 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99878 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46905 * 89.99712 * 14 12 10 16 16 H 1.48500 * 109.47342 * 210.00158 * 14 12 10 17 17 H 1.48503 * 109.46983 * 330.00251 * 14 12 10 18 18 C 1.53183 * 109.54045 * 183.96409 * 7 6 4 19 19 C 1.53277 * 109.06225 * 297.02550 * 18 7 6 20 20 O 1.42905 * 109.46314 * 302.45081 * 19 18 7 21 21 C 1.42901 * 114.09888 * 61.15426 * 20 19 18 22 22 C 1.53095 * 109.41477 * 298.84381 * 21 20 19 23 23 C 1.50703 * 109.47195 * 239.99861 * 2 1 3 24 24 C 1.33388 * 125.20141 * 119.99722 * 23 2 1 25 25 C 1.38427 * 114.92134 * 179.97438 * 24 23 2 26 26 C 1.33391 * 114.91686 * 0.02562 * 25 24 23 27 27 S 1.75876 * 125.20479 * 299.70021 * 23 2 1 28 28 H 1.09002 * 109.47220 * 300.00091 * 1 2 3 29 29 H 1.09004 * 109.47064 * 59.99771 * 1 2 3 30 30 H 1.08994 * 109.47769 * 179.97438 * 1 2 3 31 31 H 0.96996 * 120.00197 * 354.69324 * 6 4 2 32 32 H 1.09000 * 109.47117 * 65.57851 * 8 7 6 33 33 H 1.08996 * 109.47338 * 185.58314 * 8 7 6 34 34 H 0.97003 * 120.00058 * 355.01452 * 9 8 7 35 35 H 0.96995 * 119.99855 * 180.02562 * 13 12 10 36 36 H 1.08996 * 109.52220 * 57.01847 * 18 7 6 37 37 H 1.08998 * 109.51636 * 177.20823 * 18 7 6 38 38 H 1.08996 * 109.45995 * 182.45042 * 19 18 7 39 39 H 1.08996 * 109.46543 * 62.45169 * 19 18 7 40 40 H 1.08998 * 109.47970 * 178.86116 * 21 20 19 41 41 H 1.08998 * 109.49151 * 58.83589 * 21 20 19 42 42 H 1.08994 * 109.52221 * 297.69971 * 22 21 20 43 43 H 1.09003 * 109.56706 * 177.54569 * 22 21 20 44 44 H 1.07999 * 122.54070 * 0.02562 * 24 23 2 45 45 H 1.08000 * 122.53736 * 180.02562 * 25 24 23 46 46 H 1.07996 * 125.19651 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.0963 -1.0044 3.6484 8 6 1.5543 -2.4319 3.5514 9 7 0.1082 -2.3906 3.3206 10 6 -0.5831 -3.5514 3.0975 11 1 -0.0621 -4.4974 3.0913 12 6 -1.9535 -3.5122 2.8793 13 7 -2.5884 -2.3593 2.8874 14 14 -2.8963 -5.0956 2.5743 15 1 -3.3689 -5.6476 3.8693 16 1 -4.0635 -4.8162 1.6997 17 1 -2.0059 -6.0820 1.9113 18 6 1.5238 -0.3225 4.8949 19 6 2.1341 1.0775 5.0246 20 8 3.5579 0.9723 5.0875 21 6 4.1513 0.3842 3.9281 22 6 3.6239 -1.0425 3.7547 23 6 2.0323 -0.7104 -1.2305 24 6 2.8023 -0.1646 -2.1730 25 6 3.1404 -1.0128 -3.2134 26 6 2.6443 -2.2472 -3.1161 27 16 1.6990 -2.3882 -1.6397 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.2144 0.5808 2.5451 32 1 2.0395 -2.9494 2.7239 33 1 1.7587 -2.9622 4.4815 34 1 -0.3597 -1.5409 3.3259 35 1 -3.5460 -2.3320 2.7353 36 1 0.4407 -0.2429 4.8015 37 1 1.7719 -0.9109 5.7783 38 1 1.7642 1.5521 5.9333 39 1 1.8519 1.6783 4.1600 40 1 5.2345 0.3594 4.0471 41 1 3.8957 0.9757 3.0490 42 1 3.9143 -1.6453 4.6150 43 1 4.0414 -1.4782 2.8469 44 1 3.1375 0.8610 -2.1273 45 1 3.7589 -0.6988 -4.0413 46 1 2.8026 -3.0399 -3.8322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570305899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:22 Heat of formation + Delta-G solvation = -55.456356 kcal Electronic energy + Delta-G solvation = -28936.220702 eV Core-core repulsion = 25145.084930 eV Total energy + Delta-G solvation = -3791.135772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79946 -39.81736 -38.50102 -37.17772 -35.43700 -34.97461 -32.92240 -32.15536 -31.95454 -29.38500 -28.16972 -25.83886 -25.37901 -24.69518 -24.14987 -22.99757 -21.70655 -20.35362 -20.09440 -19.24180 -18.62815 -17.50463 -17.15391 -16.98853 -16.81174 -16.46968 -16.19784 -16.05996 -15.48299 -15.40491 -15.12100 -14.87431 -14.54617 -14.17047 -13.99431 -13.83922 -13.57603 -13.46537 -13.27738 -13.10253 -13.07549 -12.99687 -12.79775 -12.79213 -12.53391 -12.36885 -12.29291 -12.12822 -11.95751 -11.62126 -11.38983 -11.33511 -10.99062 -10.62716 -10.41107 -9.84971 -9.51871 -9.28506 -8.92073 -7.94029 -5.18471 0.16123 0.83722 1.29009 1.42879 1.43564 1.51519 1.75846 1.88803 2.35226 2.54762 2.97838 3.38873 3.56148 3.61074 3.77574 3.88396 3.90854 4.02440 4.12951 4.24745 4.26901 4.29978 4.32346 4.48159 4.64951 4.68736 4.74064 4.77078 4.81464 4.82202 4.87187 4.87883 4.90555 5.09578 5.13142 5.17373 5.22657 5.23797 5.30125 5.42159 5.48168 5.68907 5.69279 6.26512 6.28657 6.67749 7.37155 7.40397 8.09901 8.40690 9.28197 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007236 B = 0.006362 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3868.458360 B = 4399.860500 C = 7329.171901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.034 4.034 3 H 0.146 0.854 4 C 0.521 3.479 5 O -0.554 6.554 6 N -0.703 5.703 7 C 0.183 3.817 8 C 0.145 3.855 9 N -0.722 5.722 10 C -0.238 4.238 11 H 0.056 0.944 12 C -0.059 4.059 13 N -0.955 5.955 14 Si 0.956 3.044 15 H -0.286 1.286 16 H -0.292 1.292 17 H -0.282 1.282 18 C -0.148 4.148 19 C 0.066 3.934 20 O -0.393 6.393 21 C 0.073 3.927 22 C -0.156 4.156 23 C -0.163 4.163 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.230 4.230 27 S 0.065 5.935 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.027 0.973 31 H 0.406 0.594 32 H 0.022 0.978 33 H 0.011 0.989 34 H 0.379 0.621 35 H 0.250 0.750 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.167 0.833 45 H 0.167 0.833 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.346 12.558 -6.241 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.056 4.056 3 H 0.163 0.837 4 C 0.307 3.693 5 O -0.431 6.431 6 N -0.356 5.356 7 C 0.097 3.903 8 C 0.017 3.983 9 N -0.365 5.365 10 C -0.371 4.371 11 H 0.074 0.926 12 C -0.253 4.253 13 N -0.605 5.605 14 Si 0.786 3.214 15 H -0.213 1.213 16 H -0.218 1.218 17 H -0.208 1.208 18 C -0.186 4.186 19 C -0.011 4.011 20 O -0.312 6.312 21 C -0.003 4.003 22 C -0.195 4.195 23 C -0.281 4.281 24 C -0.169 4.169 25 C -0.167 4.167 26 C -0.365 4.365 27 S 0.330 5.670 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.243 0.757 32 H 0.040 0.960 33 H 0.029 0.971 34 H 0.213 0.787 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.131 0.869 39 H 0.083 0.917 40 H 0.124 0.876 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.184 0.816 45 H 0.184 0.816 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 12.100 10.524 -5.504 16.955 hybrid contribution -0.735 -0.083 -0.899 1.165 sum 11.365 10.441 -6.403 16.708 Atomic orbital electron populations 1.21699 0.91571 1.01756 1.03831 1.19872 0.97348 1.00699 0.87728 0.83658 1.20659 0.79347 0.84240 0.85037 1.90650 1.38611 1.27026 1.86841 1.45778 1.58484 1.26692 1.04635 1.20366 0.94252 0.90758 0.84949 1.21073 0.84926 0.95204 0.97096 1.42160 1.02454 1.05856 1.86056 1.19394 0.90680 0.87658 1.39333 0.92637 1.25229 0.97147 0.99170 1.03704 1.69734 1.08213 1.24297 1.58303 0.85403 0.78310 0.80242 0.77417 1.21342 1.21796 1.20797 1.22394 1.01271 0.98356 0.96600 1.22706 0.80287 0.94360 1.03717 1.87903 1.20521 1.81600 1.41143 1.22509 0.98428 0.91198 0.88188 1.22460 0.94277 0.99494 1.03261 1.24066 1.06468 0.96375 1.01156 1.20410 0.99602 1.02663 0.94185 1.20422 1.02786 0.92557 1.00960 1.25978 1.06247 1.02744 1.01579 1.85246 1.51524 1.12285 1.17974 0.90647 0.89686 0.95412 0.75717 0.95987 0.97137 0.78721 0.94060 0.90647 0.90311 0.86866 0.91670 0.87599 0.92576 0.90770 0.90541 0.81607 0.81562 0.80465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.02 71.98 0.65 -3.13 16 2 C -0.03 -0.89 3.10 -12.29 -0.04 -0.93 16 3 H 0.15 2.58 8.08 -2.39 -0.02 2.56 16 4 C 0.52 16.89 6.53 87.66 0.57 17.47 16 5 O -0.55 -22.09 11.54 -3.02 -0.03 -22.12 16 6 N -0.70 -20.22 3.61 -422.37 -1.52 -21.74 16 7 C 0.18 5.79 0.32 3.72 0.00 5.79 16 8 C 0.14 6.22 4.79 86.38 0.41 6.63 16 9 N -0.72 -36.12 5.21 -343.44 -1.79 -37.91 16 10 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 11 H 0.06 3.24 7.83 -2.91 -0.02 3.22 16 12 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 13 N -0.95 -56.11 13.06 21.65 0.28 -55.83 16 14 Si 0.96 47.18 29.55 68.60 2.03 49.21 16 15 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 16 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 17 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 18 C -0.15 -4.11 4.84 30.75 0.15 -3.96 16 19 C 0.07 1.39 6.67 72.08 0.48 1.87 16 20 O -0.39 -9.37 10.77 -148.98 -1.60 -10.98 16 21 C 0.07 1.66 6.68 72.01 0.48 2.14 16 22 C -0.16 -4.43 4.82 30.68 0.15 -4.28 16 23 C -0.16 -4.66 4.61 24.59 0.11 -4.55 16 24 C -0.14 -3.16 10.01 21.22 0.21 -2.94 16 25 C -0.14 -2.98 10.18 21.22 0.22 -2.77 16 26 C -0.23 -5.85 11.23 66.72 0.75 -5.10 16 27 S 0.06 2.19 22.17 -56.49 -1.25 0.94 16 28 H 0.07 2.04 7.69 -2.39 -0.02 2.02 16 29 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.03 1.06 8.01 -2.39 -0.02 1.04 16 31 H 0.41 9.49 6.99 -92.71 -0.65 8.85 16 32 H 0.02 1.09 6.25 -2.39 -0.01 1.07 16 33 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.38 19.11 6.51 -92.71 -0.60 18.50 16 35 H 0.25 14.37 8.31 -92.71 -0.77 13.59 16 36 H 0.07 2.34 7.22 -2.39 -0.02 2.32 16 37 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.07 1.15 7.01 -2.39 -0.02 1.14 16 40 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.06 1.18 7.75 -2.39 -0.02 1.16 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.08 2.49 6.26 -2.39 -0.01 2.47 16 44 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 45 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 46 H 0.18 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -71.53 376.46 1.31 -70.22 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -0.25 Total: 37.72 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 5.45 Total: -9.51 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -3.03 Total: -115.48 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.64 Total: -33.10 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -1.25 Total: 0.94 kcal Total: -71.53 1.31 -70.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570305899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.762 kcal (2) G-P(sol) polarization free energy of solvation -71.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds