Wall clock time and date at job start Tue Mar 31 2020 20:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46714 * 2 1 4 4 C 1.50689 * 109.47312 * 239.99291 * 2 1 3 5 5 O 1.21286 * 120.00436 * 240.00001 * 4 2 1 6 6 N 1.34784 * 120.00077 * 59.99846 * 4 2 1 7 7 C 1.46505 * 119.99949 * 174.69706 * 6 4 2 8 8 C 1.52991 * 109.54441 * 304.07336 * 7 6 4 9 9 N 1.46500 * 109.47446 * 305.58259 * 8 7 6 10 10 C 1.36931 * 120.00572 * 175.03329 * 9 8 7 11 11 H 1.08007 * 119.99769 * 359.97438 * 10 9 8 12 12 C 1.38812 * 120.00171 * 179.97438 * 10 9 8 13 13 N 1.31613 * 119.99903 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99739 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47275 * 60.00209 * 14 12 10 16 16 H 1.48505 * 109.47060 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47350 * 300.00023 * 14 12 10 18 18 C 1.53178 * 109.54131 * 183.89319 * 7 6 4 19 19 C 1.53289 * 109.06441 * 297.03254 * 18 7 6 20 20 O 1.42908 * 109.45773 * 302.44649 * 19 18 7 21 21 C 1.42909 * 114.09820 * 61.16022 * 20 19 18 22 22 C 1.53089 * 109.41170 * 298.83809 * 21 20 19 23 23 C 1.50707 * 109.46759 * 119.99256 * 2 1 3 24 24 C 1.33387 * 125.20196 * 239.99823 * 23 2 1 25 25 C 1.38421 * 114.91919 * 180.25232 * 24 23 2 26 26 C 1.33387 * 114.92219 * 359.49017 * 25 24 23 27 27 S 1.75886 * 109.59406 * 0.48160 * 26 25 24 28 28 H 1.09003 * 109.47104 * 60.00733 * 1 2 3 29 29 H 1.09006 * 109.47015 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47718 * 300.00384 * 1 2 3 31 31 H 0.96995 * 119.99422 * 354.70266 * 6 4 2 32 32 H 1.09003 * 109.47398 * 65.58184 * 8 7 6 33 33 H 1.09008 * 109.47264 * 185.58145 * 8 7 6 34 34 H 0.97005 * 119.99687 * 355.02739 * 9 8 7 35 35 H 0.97009 * 119.99792 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.52436 * 57.01880 * 18 7 6 37 37 H 1.08998 * 109.52035 * 177.20989 * 18 7 6 38 38 H 1.08999 * 109.45598 * 182.44899 * 19 18 7 39 39 H 1.09006 * 109.46477 * 62.44593 * 19 18 7 40 40 H 1.08999 * 109.47894 * 178.85655 * 21 20 19 41 41 H 1.08997 * 109.48879 * 58.82801 * 21 20 19 42 42 H 1.08998 * 109.52472 * 297.70027 * 22 21 20 43 43 H 1.09004 * 109.57194 * 177.54650 * 22 21 20 44 44 H 1.07995 * 122.54032 * 359.97438 * 24 23 2 45 45 H 1.08001 * 122.53776 * 179.73286 * 25 24 23 46 46 H 1.07996 * 125.20517 * 180.20078 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7297 -1.6966 -1.1189 6 7 1.7068 -0.2502 -2.4545 7 6 2.2881 -0.8693 -3.6483 8 6 3.8145 -0.8327 -3.5521 9 7 4.2565 0.5450 -3.3224 10 6 5.5813 0.8111 -3.1003 11 1 6.3003 0.0052 -3.0942 12 6 6.0001 2.1166 -2.8832 13 7 5.1238 3.0986 -2.8902 14 14 7.8072 2.4794 -2.5796 15 1 8.6046 2.0371 -3.7516 16 1 7.9918 3.9390 -2.3769 17 1 8.2617 1.7507 -1.3681 18 6 1.8346 -0.1034 -4.8950 19 6 0.3111 -0.2135 -5.0237 20 8 -0.0630 -1.5914 -5.0856 21 6 0.2949 -2.3458 -3.9259 22 6 1.8159 -2.3227 -3.7533 23 6 2.0323 -0.7103 1.2306 24 6 2.8024 -0.1644 2.1731 25 6 3.1443 -1.0138 3.2111 26 6 2.6432 -2.2464 3.1172 27 16 1.6922 -2.3857 1.6441 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.0877 0.4909 -2.5450 32 1 4.1416 -1.4620 -2.7244 33 1 4.2462 -1.2024 -4.4823 34 1 3.6107 1.2688 -3.3277 35 1 5.4164 4.0109 -2.7381 36 1 2.1196 0.9446 -4.8025 37 1 2.3065 -0.5336 -5.7784 38 1 -0.0139 0.2926 -5.9327 39 1 -0.1611 0.2529 -4.1591 40 1 -0.0419 -3.3757 -4.0440 41 1 -0.1774 -1.9075 -3.0468 42 1 2.2874 -2.7976 -4.6136 43 1 2.0886 -2.8607 -2.8454 44 1 3.1376 0.8612 2.1273 45 1 3.7664 -0.7010 4.0367 46 1 2.8011 -3.0390 3.8335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570305900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:26 Heat of formation + Delta-G solvation = -35.167413 kcal Electronic energy + Delta-G solvation = -28826.009284 eV Core-core repulsion = 25035.753307 eV Total energy + Delta-G solvation = -3790.255977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.56051 -38.69309 -37.45561 -35.74277 -33.96223 -33.56081 -31.35603 -31.03813 -30.36800 -28.42385 -26.52115 -24.80213 -23.74642 -23.53363 -22.98589 -21.47723 -20.55912 -19.24205 -18.89624 -17.52105 -17.22633 -16.40060 -15.95509 -15.90228 -15.47643 -15.36708 -14.75747 -14.54292 -14.30588 -14.01468 -13.71454 -13.46684 -13.09117 -12.94191 -12.72501 -12.62224 -12.45012 -12.34685 -12.15689 -12.00955 -11.81419 -11.63074 -11.51281 -11.36340 -11.16526 -10.90970 -10.79347 -10.50363 -10.48769 -10.30893 -10.08775 -9.69804 -9.50486 -9.23500 -8.79117 -8.56757 -8.45803 -8.15705 -6.85870 -5.74997 -3.00797 1.16581 1.84143 2.21788 2.88425 3.06698 3.45547 3.49413 3.50956 3.53014 3.95521 4.60582 4.61075 4.76213 4.94231 5.01275 5.05309 5.09368 5.15902 5.18004 5.27604 5.37777 5.44855 5.54951 5.60740 5.66884 5.73593 5.75188 5.77195 5.79730 5.95016 5.98559 6.07284 6.11206 6.25561 6.28212 6.32357 6.45809 6.48146 6.56002 6.64753 6.89165 7.08236 7.26086 7.73831 7.87588 8.44778 8.63209 9.56454 10.13429 10.49627 11.48165 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007510 B = 0.005811 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3727.504589 B = 4816.967600 C = 7608.310392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 H 0.117 0.883 4 C 0.530 3.470 5 O -0.518 6.518 6 N -0.712 5.712 7 C 0.176 3.824 8 C 0.142 3.858 9 N -0.723 5.723 10 C -0.228 4.228 11 H 0.067 0.933 12 C -0.015 4.015 13 N -0.937 5.937 14 Si 0.904 3.096 15 H -0.287 1.287 16 H -0.292 1.292 17 H -0.287 1.287 18 C -0.155 4.155 19 C 0.061 3.939 20 O -0.386 6.386 21 C 0.067 3.933 22 C -0.163 4.163 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.132 4.132 26 C -0.230 4.230 27 S 0.126 5.874 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.394 0.606 32 H 0.050 0.950 33 H 0.019 0.981 34 H 0.381 0.619 35 H 0.253 0.747 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.440 -7.946 5.729 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.068 4.068 3 H 0.135 0.865 4 C 0.315 3.685 5 O -0.393 6.393 6 N -0.364 5.364 7 C 0.090 3.910 8 C 0.014 3.986 9 N -0.368 5.368 10 C -0.360 4.360 11 H 0.085 0.915 12 C -0.210 4.210 13 N -0.587 5.587 14 Si 0.736 3.264 15 H -0.214 1.214 16 H -0.218 1.218 17 H -0.214 1.214 18 C -0.193 4.193 19 C -0.015 4.015 20 O -0.305 6.305 21 C -0.010 4.010 22 C -0.202 4.202 23 C -0.262 4.262 24 C -0.169 4.169 25 C -0.163 4.163 26 C -0.365 4.365 27 S 0.391 5.609 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.228 0.772 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.215 0.785 35 H 0.063 0.937 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.156 0.844 45 H 0.153 0.847 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.646 -9.945 5.003 18.397 hybrid contribution 1.842 2.294 1.078 3.133 sum -12.805 -7.652 6.081 16.109 Atomic orbital electron populations 1.21835 0.92307 1.02706 1.03046 1.19861 0.96919 1.00631 0.89408 0.86515 1.20050 0.80060 0.84399 0.84015 1.90662 1.36634 1.25763 1.86278 1.45874 1.48210 1.37072 1.05265 1.20553 0.95054 0.91699 0.83668 1.21075 0.89099 0.89553 0.98908 1.42176 1.06385 1.01765 1.86439 1.19174 0.84790 0.92243 1.39764 0.91514 1.24644 0.97463 0.95677 1.03217 1.69628 1.32495 0.99074 1.57513 0.86302 0.85281 0.76777 0.78084 1.21369 1.21763 1.21409 1.22475 0.96070 1.02777 0.97974 1.22630 0.94348 0.82812 1.01745 1.87898 1.80678 1.21101 1.40787 1.22501 0.94593 0.95957 0.87938 1.22552 0.96218 0.97169 1.04264 1.23865 1.05511 0.97093 0.99767 1.20116 1.00158 1.01832 0.94818 1.20063 1.02585 0.93217 1.00417 1.25603 1.07128 1.01418 1.02390 1.84043 1.50352 1.10277 1.16261 0.91531 0.92095 0.91084 0.77217 0.93209 0.96342 0.78518 0.93691 0.89189 0.89578 0.88853 0.93603 0.89366 0.93508 0.90524 0.88756 0.84381 0.84697 0.82390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.01 37.16 0.33 -1.10 16 2 C -0.04 -0.62 3.11 -92.92 -0.29 -0.91 16 3 H 0.12 1.66 8.08 -51.93 -0.42 1.24 16 4 C 0.53 8.68 6.54 -10.99 -0.07 8.61 16 5 O -0.52 -10.10 11.56 5.55 0.06 -10.03 16 6 N -0.71 -10.55 3.68 -47.44 -0.17 -10.72 16 7 C 0.18 2.80 0.32 -131.64 -0.04 2.76 16 8 C 0.14 2.97 4.79 -4.05 -0.02 2.95 16 9 N -0.72 -17.92 5.21 -59.91 -0.31 -18.23 16 10 C -0.23 -6.46 9.99 -15.06 -0.15 -6.61 16 11 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 12 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 13 N -0.94 -27.70 13.06 55.49 0.72 -26.98 16 14 Si 0.90 22.82 29.55 -169.99 -5.02 17.80 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 18 C -0.15 -2.23 4.84 -26.49 -0.13 -2.35 16 19 C 0.06 0.73 6.67 37.31 0.25 0.98 16 20 O -0.39 -5.13 10.77 -35.23 -0.38 -5.51 16 21 C 0.07 0.83 6.68 37.20 0.25 1.08 16 22 C -0.16 -2.35 4.82 -26.59 -0.13 -2.48 16 23 C -0.14 -2.13 4.60 -36.00 -0.17 -2.30 16 24 C -0.14 -2.03 10.01 -41.21 -0.41 -2.45 16 25 C -0.13 -1.74 10.18 -41.21 -0.42 -2.16 16 26 C -0.23 -2.89 11.23 29.04 0.33 -2.57 16 27 S 0.13 1.72 22.18 -107.50 -2.38 -0.67 16 28 H 0.07 0.57 7.45 -51.93 -0.39 0.18 16 29 H 0.06 0.62 8.00 -51.93 -0.42 0.20 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.39 4.98 6.68 -40.82 -0.27 4.70 16 32 H 0.05 1.17 6.26 -51.93 -0.32 0.85 16 33 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 34 H 0.38 9.58 6.51 -40.82 -0.27 9.32 16 35 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.09 1.43 7.22 -51.93 -0.37 1.05 16 37 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.48 7.02 -51.93 -0.36 0.12 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.56 7.75 -51.93 -0.40 0.16 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.09 1.51 6.26 -51.93 -0.32 1.18 16 44 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 45 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -32.82 376.00 -9.49 -42.31 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -6.90 Total: 13.43 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -0.76 Total: -7.07 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.24 Total: -55.93 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.32 Total: -15.54 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.38 Total: -0.67 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.82 -9.49 -42.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570305900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.139 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds