Wall clock time and date at job start Tue Mar 31 2020 20:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46714 * 2 1 4 4 C 1.50689 * 109.47312 * 239.99291 * 2 1 3 5 5 O 1.21286 * 120.00436 * 240.00001 * 4 2 1 6 6 N 1.34784 * 120.00077 * 59.99846 * 4 2 1 7 7 C 1.46505 * 119.99949 * 174.69706 * 6 4 2 8 8 C 1.52991 * 109.54441 * 304.07336 * 7 6 4 9 9 N 1.46500 * 109.47446 * 305.58259 * 8 7 6 10 10 C 1.36931 * 120.00572 * 175.03329 * 9 8 7 11 11 H 1.08007 * 119.99769 * 359.97438 * 10 9 8 12 12 C 1.38812 * 120.00171 * 179.97438 * 10 9 8 13 13 N 1.31613 * 119.99903 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99739 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47275 * 60.00209 * 14 12 10 16 16 H 1.48505 * 109.47060 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47350 * 300.00023 * 14 12 10 18 18 C 1.53178 * 109.54131 * 183.89319 * 7 6 4 19 19 C 1.53289 * 109.06441 * 297.03254 * 18 7 6 20 20 O 1.42908 * 109.45773 * 302.44649 * 19 18 7 21 21 C 1.42909 * 114.09820 * 61.16022 * 20 19 18 22 22 C 1.53089 * 109.41170 * 298.83809 * 21 20 19 23 23 C 1.50707 * 109.46759 * 119.99256 * 2 1 3 24 24 C 1.33387 * 125.20196 * 239.99823 * 23 2 1 25 25 C 1.38421 * 114.91919 * 180.25232 * 24 23 2 26 26 C 1.33387 * 114.92219 * 359.49017 * 25 24 23 27 27 S 1.75886 * 109.59406 * 0.48160 * 26 25 24 28 28 H 1.09003 * 109.47104 * 60.00733 * 1 2 3 29 29 H 1.09006 * 109.47015 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47718 * 300.00384 * 1 2 3 31 31 H 0.96995 * 119.99422 * 354.70266 * 6 4 2 32 32 H 1.09003 * 109.47398 * 65.58184 * 8 7 6 33 33 H 1.09008 * 109.47264 * 185.58145 * 8 7 6 34 34 H 0.97005 * 119.99687 * 355.02739 * 9 8 7 35 35 H 0.97009 * 119.99792 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.52436 * 57.01880 * 18 7 6 37 37 H 1.08998 * 109.52035 * 177.20989 * 18 7 6 38 38 H 1.08999 * 109.45598 * 182.44899 * 19 18 7 39 39 H 1.09006 * 109.46477 * 62.44593 * 19 18 7 40 40 H 1.08999 * 109.47894 * 178.85655 * 21 20 19 41 41 H 1.08997 * 109.48879 * 58.82801 * 21 20 19 42 42 H 1.08998 * 109.52472 * 297.70027 * 22 21 20 43 43 H 1.09004 * 109.57194 * 177.54650 * 22 21 20 44 44 H 1.07995 * 122.54032 * 359.97438 * 24 23 2 45 45 H 1.08001 * 122.53776 * 179.73286 * 25 24 23 46 46 H 1.07996 * 125.20517 * 180.20078 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7297 -1.6966 -1.1189 6 7 1.7068 -0.2502 -2.4545 7 6 2.2881 -0.8693 -3.6483 8 6 3.8145 -0.8327 -3.5521 9 7 4.2565 0.5450 -3.3224 10 6 5.5813 0.8111 -3.1003 11 1 6.3003 0.0052 -3.0942 12 6 6.0001 2.1166 -2.8832 13 7 5.1238 3.0986 -2.8902 14 14 7.8072 2.4794 -2.5796 15 1 8.6046 2.0371 -3.7516 16 1 7.9918 3.9390 -2.3769 17 1 8.2617 1.7507 -1.3681 18 6 1.8346 -0.1034 -4.8950 19 6 0.3111 -0.2135 -5.0237 20 8 -0.0630 -1.5914 -5.0856 21 6 0.2949 -2.3458 -3.9259 22 6 1.8159 -2.3227 -3.7533 23 6 2.0323 -0.7103 1.2306 24 6 2.8024 -0.1644 2.1731 25 6 3.1443 -1.0138 3.2111 26 6 2.6432 -2.2464 3.1172 27 16 1.6922 -2.3857 1.6441 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.0877 0.4909 -2.5450 32 1 4.1416 -1.4620 -2.7244 33 1 4.2462 -1.2024 -4.4823 34 1 3.6107 1.2688 -3.3277 35 1 5.4164 4.0109 -2.7381 36 1 2.1196 0.9446 -4.8025 37 1 2.3065 -0.5336 -5.7784 38 1 -0.0139 0.2926 -5.9327 39 1 -0.1611 0.2529 -4.1591 40 1 -0.0419 -3.3757 -4.0440 41 1 -0.1774 -1.9075 -3.0468 42 1 2.2874 -2.7976 -4.6136 43 1 2.0886 -2.8607 -2.8454 44 1 3.1376 0.8612 2.1273 45 1 3.7664 -0.7010 4.0367 46 1 2.8011 -3.0390 3.8335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570305900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:25 Heat of formation + Delta-G solvation = -56.251280 kcal Electronic energy + Delta-G solvation = -28826.923549 eV Core-core repulsion = 25035.753307 eV Total energy + Delta-G solvation = -3791.170242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81553 -39.82736 -38.53973 -37.20308 -35.46469 -34.99576 -32.93798 -32.16816 -31.96674 -29.41779 -28.16933 -25.85518 -25.40173 -24.70054 -24.16911 -23.01372 -21.70983 -20.36573 -20.16368 -19.26679 -18.66465 -17.53658 -17.11994 -16.98311 -16.82744 -16.53805 -16.29272 -15.93910 -15.58258 -15.28553 -15.25569 -14.88763 -14.55002 -14.23771 -14.06195 -13.72581 -13.67318 -13.50983 -13.24321 -13.15249 -13.10697 -12.98541 -12.82844 -12.76668 -12.58601 -12.39768 -12.29320 -12.16046 -11.96532 -11.63234 -11.55299 -11.34114 -11.00753 -10.63151 -10.42754 -9.87276 -9.53707 -9.23015 -8.95441 -7.96586 -5.21888 0.10677 0.79862 1.17168 1.42661 1.44558 1.50598 1.72871 1.86167 2.31120 2.53523 2.97817 3.36092 3.54643 3.59049 3.76608 3.83765 3.89258 4.02587 4.09720 4.24598 4.25936 4.29337 4.34831 4.46976 4.61949 4.69127 4.70537 4.76946 4.80052 4.81715 4.85449 4.87682 4.88254 5.08963 5.12541 5.16488 5.17424 5.22714 5.24043 5.42023 5.45316 5.59909 5.67745 6.26233 6.26450 6.65535 7.34157 7.37857 8.07370 8.37309 9.25808 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007510 B = 0.005811 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3727.504589 B = 4816.967600 C = 7608.310392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.042 4.042 3 H 0.109 0.891 4 C 0.523 3.477 5 O -0.553 6.553 6 N -0.703 5.703 7 C 0.183 3.817 8 C 0.144 3.856 9 N -0.725 5.725 10 C -0.243 4.243 11 H 0.058 0.942 12 C -0.063 4.063 13 N -0.959 5.959 14 Si 0.963 3.037 15 H -0.280 1.280 16 H -0.289 1.289 17 H -0.287 1.287 18 C -0.148 4.148 19 C 0.066 3.934 20 O -0.392 6.392 21 C 0.073 3.927 22 C -0.156 4.156 23 C -0.164 4.164 24 C -0.157 4.157 25 C -0.145 4.145 26 C -0.225 4.225 27 S 0.122 5.878 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.406 0.594 32 H 0.023 0.977 33 H 0.013 0.987 34 H 0.378 0.622 35 H 0.252 0.748 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.136 0.864 45 H 0.156 0.844 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.838 -8.081 5.943 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.066 4.066 3 H 0.127 0.873 4 C 0.310 3.690 5 O -0.431 6.431 6 N -0.356 5.356 7 C 0.097 3.903 8 C 0.017 3.983 9 N -0.368 5.368 10 C -0.375 4.375 11 H 0.076 0.924 12 C -0.256 4.256 13 N -0.610 5.610 14 Si 0.792 3.208 15 H -0.207 1.207 16 H -0.215 1.215 17 H -0.214 1.214 18 C -0.187 4.187 19 C -0.011 4.011 20 O -0.311 6.311 21 C -0.004 4.004 22 C -0.195 4.195 23 C -0.282 4.282 24 C -0.187 4.187 25 C -0.175 4.175 26 C -0.361 4.361 27 S 0.386 5.614 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.243 0.757 32 H 0.041 0.959 33 H 0.030 0.970 34 H 0.212 0.788 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.132 0.868 39 H 0.083 0.917 40 H 0.125 0.875 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.154 0.846 45 H 0.173 0.827 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -16.072 -10.082 5.204 19.673 hybrid contribution 2.342 2.284 1.018 3.426 sum -13.730 -7.798 6.222 16.972 Atomic orbital electron populations 1.21834 0.89271 1.03310 1.04715 1.19882 0.99410 0.99427 0.87851 0.87348 1.20569 0.79454 0.84059 0.84954 1.90645 1.38167 1.27440 1.86851 1.45784 1.47985 1.37161 1.04634 1.20380 0.91619 0.93438 0.84908 1.21088 0.93017 0.87043 0.97186 1.42190 1.05275 1.03160 1.86158 1.19419 0.86246 0.92254 1.39558 0.92420 1.25317 1.01154 0.95551 1.03600 1.69743 1.33887 0.99079 1.58264 0.85383 0.81048 0.76472 0.77882 1.20668 1.21457 1.21421 1.22400 0.98381 1.01271 0.96607 1.22709 0.92004 0.82653 1.03708 1.87906 1.80408 1.21652 1.41121 1.22516 0.92517 0.97155 0.88178 1.22467 0.98180 0.95492 1.03373 1.24091 1.06062 0.97877 1.00193 1.20354 1.00482 1.02232 0.95676 1.20305 1.03135 0.93308 1.00768 1.25975 1.06054 1.01929 1.02122 1.83988 1.50693 1.09704 1.17006 0.89575 0.91956 0.89734 0.75749 0.95935 0.96972 0.78808 0.93947 0.90699 0.90221 0.86833 0.91724 0.87530 0.92624 0.90661 0.90427 0.84624 0.82666 0.79632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.01 71.98 0.65 -1.84 16 2 C -0.04 -1.16 3.11 -12.29 -0.04 -1.20 16 3 H 0.11 3.12 8.08 -2.39 -0.02 3.10 16 4 C 0.52 17.21 6.54 87.65 0.57 17.78 16 5 O -0.55 -22.08 11.56 -3.05 -0.04 -22.12 16 6 N -0.70 -20.48 3.68 -422.38 -1.55 -22.03 16 7 C 0.18 5.80 0.32 3.72 0.00 5.80 16 8 C 0.14 6.23 4.79 86.38 0.41 6.64 16 9 N -0.72 -36.69 5.21 -343.45 -1.79 -38.48 16 10 C -0.24 -13.99 9.99 84.03 0.84 -13.15 16 11 H 0.06 3.36 7.83 -2.91 -0.02 3.34 16 12 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 13 N -0.96 -56.96 13.06 21.65 0.28 -56.68 16 14 Si 0.96 47.16 29.55 68.60 2.03 49.18 16 15 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 16 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 17 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 18 C -0.15 -4.13 4.84 30.75 0.15 -3.99 16 19 C 0.07 1.39 6.67 72.08 0.48 1.87 16 20 O -0.39 -9.33 10.77 -148.98 -1.60 -10.93 16 21 C 0.07 1.65 6.68 72.01 0.48 2.13 16 22 C -0.16 -4.42 4.82 30.68 0.15 -4.27 16 23 C -0.16 -4.85 4.60 24.59 0.11 -4.74 16 24 C -0.16 -4.61 10.01 21.22 0.21 -4.40 16 25 C -0.14 -3.70 10.18 21.22 0.22 -3.48 16 26 C -0.23 -5.38 11.23 66.72 0.75 -4.63 16 27 S 0.12 3.25 22.18 -56.49 -1.25 2.00 16 28 H 0.09 1.24 7.45 -2.39 -0.02 1.22 16 29 H 0.06 1.16 8.00 -2.38 -0.02 1.14 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.41 9.69 6.68 -92.71 -0.62 9.07 16 32 H 0.02 1.11 6.26 -2.39 -0.01 1.10 16 33 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.38 19.36 6.51 -92.70 -0.60 18.75 16 35 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 36 H 0.07 2.34 7.22 -2.39 -0.02 2.32 16 37 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 38 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 1.15 7.02 -2.38 -0.02 1.13 16 40 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.06 1.18 7.75 -2.39 -0.02 1.16 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.08 2.50 6.26 -2.39 -0.01 2.49 16 44 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 45 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 46 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -71.02 376.00 1.31 -69.71 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: -0.22 Total: 40.01 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 5.45 Total: -10.66 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -3.06 Total: -117.19 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -1.64 Total: -33.05 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.25 Total: 2.00 kcal Total: -71.02 1.31 -69.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570305900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.464 kcal (2) G-P(sol) polarization free energy of solvation -71.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds