Wall clock time and date at job start Tue Mar 31 2020 20:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46994 * 2 1 4 4 N 1.46499 * 109.47069 * 119.99489 * 2 1 3 5 5 C 1.34770 * 120.00279 * 275.00279 * 4 2 1 6 6 O 1.21286 * 120.00029 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00009 * 180.27432 * 5 4 2 8 8 O 1.42904 * 109.47092 * 179.72737 * 7 5 4 9 9 C 1.36228 * 116.99787 * 180.02562 * 8 7 5 10 10 C 1.38668 * 122.58332 * 179.73709 * 9 8 7 11 11 C 1.33439 * 114.88223 * 179.75893 * 10 9 8 12 12 S 1.75860 * 109.65908 * 0.47593 * 11 10 9 13 13 C 1.33627 * 122.58919 * 0.02562 * 9 8 7 14 14 C 1.52999 * 109.47369 * 240.00209 * 2 1 3 15 15 C 1.53041 * 109.45989 * 180.02562 * 14 2 1 16 16 C 1.53197 * 109.31316 * 178.59648 * 15 14 2 17 17 N 1.46923 * 108.76126 * 54.65581 * 16 15 14 18 18 C 1.36939 * 120.63209 * 126.40979 * 17 16 15 19 19 H 1.08000 * 119.99192 * 332.60356 * 18 17 16 20 20 C 1.38808 * 120.00467 * 152.60492 * 18 17 16 21 21 N 1.31611 * 120.00173 * 159.34541 * 20 18 17 22 22 Si 1.86806 * 119.99797 * 339.34206 * 20 18 17 23 23 H 1.48497 * 109.47040 * 92.94197 * 22 20 18 24 24 H 1.48498 * 109.47028 * 212.94127 * 22 20 18 25 25 H 1.48495 * 109.47037 * 332.94592 * 22 20 18 26 26 C 1.46928 * 118.74101 * 306.38057 * 17 16 15 27 27 C 1.53036 * 109.46176 * 59.97157 * 14 2 1 28 28 H 1.08995 * 109.46711 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47094 * 300.00015 * 1 2 3 30 30 H 1.09005 * 109.47097 * 60.00423 * 1 2 3 31 31 H 0.96997 * 119.99577 * 95.00270 * 4 2 1 32 32 H 1.08996 * 109.47426 * 299.72367 * 7 5 4 33 33 H 1.09000 * 109.47425 * 59.72798 * 7 5 4 34 34 H 1.08003 * 122.55827 * 359.97278 * 10 9 8 35 35 H 1.08007 * 125.16830 * 180.22426 * 11 10 9 36 36 H 1.07997 * 125.19566 * 0.02562 * 13 9 8 37 37 H 1.09005 * 109.45672 * 299.99445 * 14 2 1 38 38 H 1.08992 * 109.49793 * 298.56406 * 15 14 2 39 39 H 1.08998 * 109.49605 * 58.66068 * 15 14 2 40 40 H 1.09001 * 109.59607 * 294.86531 * 16 15 14 41 41 H 1.08993 * 109.70214 * 174.50554 * 16 15 14 42 42 H 0.97005 * 120.00102 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.58658 * 293.82735 * 26 17 16 44 44 H 1.08997 * 109.70403 * 173.46736 * 26 17 16 45 45 H 1.09005 * 109.49689 * 301.33297 * 27 14 2 46 46 H 1.08992 * 109.49858 * 61.40318 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8581 1.1585 2.4117 7 6 2.6552 -0.7270 3.5861 8 8 2.7081 0.1926 4.6787 9 6 3.1497 -0.2911 5.8732 10 6 3.2524 0.5002 7.0073 11 6 3.6977 -0.1321 8.0947 12 16 4.0292 -1.8150 7.7063 13 6 3.5228 -1.5632 6.0410 14 6 2.0401 -0.7212 -1.2492 15 6 3.5705 -0.7216 -1.2486 16 6 4.0775 -1.4748 -2.4825 17 7 3.4750 -0.8769 -3.6817 18 6 4.2608 -0.4515 -4.7193 19 1 5.2761 -0.1340 -4.5327 20 6 3.7527 -0.4283 -6.0108 21 7 4.3157 0.3317 -6.9260 22 14 2.2697 -1.4760 -6.4499 23 1 1.0305 -0.6753 -6.2808 24 1 2.3807 -1.9242 -7.8613 25 1 2.2189 -2.6611 -5.5566 26 6 2.0131 -0.7448 -3.7469 27 6 1.5293 0.0000 -2.4986 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 2.2491 -1.6316 1.1527 32 1 1.9840 -1.5489 3.8351 33 1 3.6537 -1.1191 3.3926 34 1 2.9886 1.5475 7.0111 35 1 3.8374 0.3217 9.0648 36 1 3.5148 -2.3209 5.2715 37 1 1.6767 -1.7489 -1.2490 38 1 3.9346 0.3055 -1.2740 39 1 3.9338 -1.2146 -0.3469 40 1 3.7906 -2.5241 -2.4137 41 1 5.1630 -1.3959 -2.5409 42 1 3.9603 0.3482 -7.8285 43 1 1.5579 -1.7345 -3.7812 44 1 1.7343 -0.1831 -4.6385 45 1 0.4395 0.0205 -2.4868 46 1 1.9123 1.0203 -2.5118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571646301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:49 Heat of formation + Delta-G solvation = -14.158696 kcal Electronic energy + Delta-G solvation = -26779.690415 eV Core-core repulsion = 22990.345445 eV Total energy + Delta-G solvation = -3789.344971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.60572 -39.64925 -38.19116 -36.29927 -35.50864 -33.02479 -31.67048 -30.44133 -29.83377 -29.46655 -28.43297 -25.53243 -24.12531 -22.85964 -22.71980 -20.96567 -20.64189 -20.09293 -19.48911 -18.66243 -17.47860 -17.11101 -16.72867 -16.67469 -16.07138 -15.26391 -14.83042 -14.53281 -14.43964 -14.19959 -13.97108 -13.76628 -13.62937 -13.47161 -13.10381 -13.03731 -12.98261 -12.67497 -12.39985 -12.20989 -12.03330 -11.89846 -11.43360 -11.32546 -11.29909 -11.26250 -10.84159 -10.52831 -10.50950 -10.14692 -10.04291 -9.88188 -9.69945 -9.43005 -9.25728 -9.16329 -8.62873 -8.39918 -6.98607 -5.95564 -3.31253 0.56581 1.20372 1.56247 2.31005 2.34054 2.40378 3.30196 3.41538 3.46633 3.49200 4.34198 4.48144 4.51655 4.60059 4.66742 4.76806 4.85198 4.93404 4.96988 5.04591 5.16270 5.38270 5.42434 5.47761 5.51922 5.52850 5.67836 5.76962 5.77778 5.82522 5.97936 6.04326 6.10288 6.16874 6.23912 6.35470 6.44670 6.48941 6.61789 6.64156 6.69049 6.81555 6.95177 7.30558 7.95832 8.01442 8.32331 8.93691 9.71510 10.09273 11.20485 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026180 B = 0.001987 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.270413 B =14091.722121 C =14530.980997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 H 0.090 0.910 4 N -0.716 5.716 5 C 0.515 3.485 6 O -0.517 6.517 7 C 0.043 3.957 8 O -0.278 6.278 9 C 0.118 3.882 10 C -0.140 4.140 11 C -0.187 4.187 12 S 0.118 5.882 13 C -0.328 4.328 14 C -0.085 4.085 15 C -0.128 4.128 16 C 0.149 3.851 17 N -0.606 5.606 18 C -0.259 4.259 19 H 0.085 0.915 20 C 0.022 3.978 21 N -0.908 5.908 22 Si 0.884 3.116 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.272 1.272 26 C 0.127 3.873 27 C -0.128 4.128 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.400 0.600 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.152 0.848 35 H 0.173 0.827 36 H 0.167 0.833 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.020 0.980 41 H 0.062 0.938 42 H 0.262 0.738 43 H 0.024 0.976 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.672 -6.107 28.711 29.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.108 0.892 4 N -0.369 5.369 5 C 0.300 3.700 6 O -0.392 6.392 7 C -0.036 4.036 8 O -0.190 6.190 9 C 0.062 3.938 10 C -0.172 4.172 11 C -0.322 4.322 12 S 0.378 5.622 13 C -0.463 4.463 14 C -0.104 4.104 15 C -0.167 4.167 16 C 0.023 3.977 17 N -0.330 5.330 18 C -0.388 4.388 19 H 0.102 0.898 20 C -0.177 4.177 21 N -0.551 5.551 22 Si 0.714 3.286 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.197 1.197 26 C 0.001 3.999 27 C -0.167 4.167 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.234 0.766 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.170 0.830 35 H 0.191 0.809 36 H 0.185 0.815 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.038 0.962 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.041 0.959 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.380 -6.218 29.311 30.281 hybrid contribution -1.198 -0.139 -1.284 1.762 sum -5.579 -6.357 28.027 29.275 Atomic orbital electron populations 1.22223 0.95351 1.02022 1.02635 1.21170 0.93810 0.97727 0.82959 0.89214 1.45944 1.67540 1.14110 1.09344 1.19926 0.78616 0.87505 0.83994 1.90763 1.48473 1.15480 1.84462 1.22478 1.02940 0.92437 0.85783 1.86212 1.80978 1.36429 1.15421 1.17907 0.97675 0.91422 0.86835 1.19510 1.05351 1.02112 0.90191 1.25545 1.06504 0.97430 1.02750 1.84202 1.65912 1.08943 1.03139 1.25366 1.18222 1.00329 1.02415 1.21338 0.96670 0.99294 0.93116 1.22050 0.94213 1.01900 0.98554 1.20909 0.97247 0.93731 0.85828 1.44351 1.00968 1.70572 1.17069 1.18919 0.97853 1.37054 0.84939 0.89785 1.25289 0.97995 0.98768 0.95642 1.69839 1.42884 1.38524 1.03874 0.86934 0.82855 0.82170 0.76597 1.21632 1.23203 1.19670 1.21323 0.85107 0.97001 0.96479 1.22098 0.99200 1.00495 0.94928 0.92589 0.92490 0.90856 0.76581 0.89129 0.88933 0.83018 0.80931 0.81536 0.91264 0.91777 0.92986 0.96199 0.91954 0.92782 0.95852 0.90902 0.92269 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.13 37.16 0.34 -1.53 16 2 C 0.15 1.81 2.16 -67.93 -0.15 1.67 16 3 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 4 N -0.72 -7.24 4.36 -53.81 -0.23 -7.48 16 5 C 0.52 6.13 7.87 -10.99 -0.09 6.04 16 6 O -0.52 -8.61 16.16 -14.36 -0.23 -8.84 16 7 C 0.04 0.37 5.35 36.00 0.19 0.57 16 8 O -0.28 -3.25 9.74 -40.38 -0.39 -3.64 16 9 C 0.12 1.16 6.64 -41.04 -0.27 0.89 16 10 C -0.14 -1.19 10.17 -41.10 -0.42 -1.61 16 11 C -0.19 -1.23 11.22 29.05 0.33 -0.90 16 12 S 0.12 0.79 23.34 -107.50 -2.51 -1.72 16 13 C -0.33 -2.61 10.09 29.12 0.29 -2.31 16 14 C -0.09 -1.17 1.79 -90.58 -0.16 -1.33 16 15 C -0.13 -1.92 5.22 -26.61 -0.14 -2.06 16 16 C 0.15 2.77 6.52 -3.71 -0.02 2.75 16 17 N -0.61 -13.99 2.77 -172.32 -0.48 -14.47 16 18 C -0.26 -7.18 10.03 -15.06 -0.15 -7.33 16 19 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 20 C 0.02 0.63 5.23 -17.44 -0.09 0.54 16 21 N -0.91 -27.80 13.97 55.49 0.78 -27.02 16 22 Si 0.88 22.17 24.35 -169.99 -4.14 18.03 16 23 H -0.29 -6.97 6.62 56.52 0.37 -6.59 16 24 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 25 H -0.27 -6.66 6.63 56.52 0.37 -6.28 16 26 C 0.13 2.65 4.20 -3.71 -0.02 2.64 16 27 C -0.13 -2.11 5.04 -26.61 -0.13 -2.24 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.83 6.40 -51.93 -0.33 0.50 16 31 H 0.40 2.88 8.39 -40.82 -0.34 2.54 16 32 H 0.09 0.55 7.86 -51.93 -0.41 0.14 16 33 H 0.09 0.61 7.85 -51.93 -0.41 0.20 16 34 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.17 0.66 8.06 -52.48 -0.42 0.24 16 36 H 0.17 0.99 7.02 -52.49 -0.37 0.63 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 0.63 7.41 -51.93 -0.38 0.25 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.02 0.48 7.07 -51.93 -0.37 0.12 16 44 H 0.07 1.70 4.50 -51.93 -0.23 1.47 16 45 H 0.06 0.84 6.36 -51.93 -0.33 0.51 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -34.30 375.41 -9.02 -43.31 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.97 Total: 0.41 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -0.49 Total: -4.23 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.06 Total: -48.97 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.63 Total: -12.48 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.03 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.51 Total: -1.72 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.30 -9.02 -43.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571646301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.152 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds