Wall clock time and date at job start Tue Mar 31 2020 20:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46994 * 2 1 4 4 N 1.46499 * 109.47069 * 119.99489 * 2 1 3 5 5 C 1.34770 * 120.00279 * 275.00279 * 4 2 1 6 6 O 1.21286 * 120.00029 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00009 * 180.27432 * 5 4 2 8 8 O 1.42904 * 109.47092 * 179.72737 * 7 5 4 9 9 C 1.36228 * 116.99787 * 180.02562 * 8 7 5 10 10 C 1.38668 * 122.58332 * 179.73709 * 9 8 7 11 11 C 1.33439 * 114.88223 * 179.75893 * 10 9 8 12 12 S 1.75860 * 109.65908 * 0.47593 * 11 10 9 13 13 C 1.33627 * 122.58919 * 0.02562 * 9 8 7 14 14 C 1.52999 * 109.47369 * 240.00209 * 2 1 3 15 15 C 1.53041 * 109.45989 * 180.02562 * 14 2 1 16 16 C 1.53197 * 109.31316 * 178.59648 * 15 14 2 17 17 N 1.46923 * 108.76126 * 54.65581 * 16 15 14 18 18 C 1.36939 * 120.63209 * 126.40979 * 17 16 15 19 19 H 1.08000 * 119.99192 * 332.60356 * 18 17 16 20 20 C 1.38808 * 120.00467 * 152.60492 * 18 17 16 21 21 N 1.31611 * 120.00173 * 159.34541 * 20 18 17 22 22 Si 1.86806 * 119.99797 * 339.34206 * 20 18 17 23 23 H 1.48497 * 109.47040 * 92.94197 * 22 20 18 24 24 H 1.48498 * 109.47028 * 212.94127 * 22 20 18 25 25 H 1.48495 * 109.47037 * 332.94592 * 22 20 18 26 26 C 1.46928 * 118.74101 * 306.38057 * 17 16 15 27 27 C 1.53036 * 109.46176 * 59.97157 * 14 2 1 28 28 H 1.08995 * 109.46711 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47094 * 300.00015 * 1 2 3 30 30 H 1.09005 * 109.47097 * 60.00423 * 1 2 3 31 31 H 0.96997 * 119.99577 * 95.00270 * 4 2 1 32 32 H 1.08996 * 109.47426 * 299.72367 * 7 5 4 33 33 H 1.09000 * 109.47425 * 59.72798 * 7 5 4 34 34 H 1.08003 * 122.55827 * 359.97278 * 10 9 8 35 35 H 1.08007 * 125.16830 * 180.22426 * 11 10 9 36 36 H 1.07997 * 125.19566 * 0.02562 * 13 9 8 37 37 H 1.09005 * 109.45672 * 299.99445 * 14 2 1 38 38 H 1.08992 * 109.49793 * 298.56406 * 15 14 2 39 39 H 1.08998 * 109.49605 * 58.66068 * 15 14 2 40 40 H 1.09001 * 109.59607 * 294.86531 * 16 15 14 41 41 H 1.08993 * 109.70214 * 174.50554 * 16 15 14 42 42 H 0.97005 * 120.00102 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.58658 * 293.82735 * 26 17 16 44 44 H 1.08997 * 109.70403 * 173.46736 * 26 17 16 45 45 H 1.09005 * 109.49689 * 301.33297 * 27 14 2 46 46 H 1.08992 * 109.49858 * 61.40318 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8581 1.1585 2.4117 7 6 2.6552 -0.7270 3.5861 8 8 2.7081 0.1926 4.6787 9 6 3.1497 -0.2911 5.8732 10 6 3.2524 0.5002 7.0073 11 6 3.6977 -0.1321 8.0947 12 16 4.0292 -1.8150 7.7063 13 6 3.5228 -1.5632 6.0410 14 6 2.0401 -0.7212 -1.2492 15 6 3.5705 -0.7216 -1.2486 16 6 4.0775 -1.4748 -2.4825 17 7 3.4750 -0.8769 -3.6817 18 6 4.2608 -0.4515 -4.7193 19 1 5.2761 -0.1340 -4.5327 20 6 3.7527 -0.4283 -6.0108 21 7 4.3157 0.3317 -6.9260 22 14 2.2697 -1.4760 -6.4499 23 1 1.0305 -0.6753 -6.2808 24 1 2.3807 -1.9242 -7.8613 25 1 2.2189 -2.6611 -5.5566 26 6 2.0131 -0.7448 -3.7469 27 6 1.5293 0.0000 -2.4986 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 2.2491 -1.6316 1.1527 32 1 1.9840 -1.5489 3.8351 33 1 3.6537 -1.1191 3.3926 34 1 2.9886 1.5475 7.0111 35 1 3.8374 0.3217 9.0648 36 1 3.5148 -2.3209 5.2715 37 1 1.6767 -1.7489 -1.2490 38 1 3.9346 0.3055 -1.2740 39 1 3.9338 -1.2146 -0.3469 40 1 3.7906 -2.5241 -2.4137 41 1 5.1630 -1.3959 -2.5409 42 1 3.9603 0.3482 -7.8285 43 1 1.5579 -1.7345 -3.7812 44 1 1.7343 -0.1831 -4.6385 45 1 0.4395 0.0205 -2.4868 46 1 1.9123 1.0203 -2.5118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571646301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:49 Heat of formation + Delta-G solvation = -36.999720 kcal Electronic energy + Delta-G solvation = -26780.680877 eV Core-core repulsion = 22990.345445 eV Total energy + Delta-G solvation = -3790.335432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.42581 -40.51749 -39.47342 -37.10763 -36.68014 -34.58542 -33.23430 -31.96435 -31.06805 -30.04171 -29.23461 -27.14401 -24.94819 -24.29315 -24.07381 -22.20246 -21.60802 -20.86564 -20.71169 -19.30728 -18.77435 -18.21370 -17.75631 -17.44589 -17.26160 -16.79063 -15.91721 -15.75228 -15.44559 -15.29701 -15.21915 -14.98585 -14.74848 -14.46235 -14.33584 -14.27457 -13.77906 -13.71783 -13.65698 -13.55526 -13.36409 -12.82947 -12.72099 -12.58512 -12.43863 -12.19192 -12.01327 -11.95780 -11.83132 -11.64279 -11.51980 -11.30842 -11.18575 -10.93004 -10.64906 -10.12979 -9.79136 -8.95912 -8.90573 -8.15689 -5.46995 0.02401 0.68685 1.01587 1.31128 1.41972 1.49759 1.51772 1.61640 1.73044 2.42904 2.70109 3.06844 3.38356 3.57297 3.70167 3.88626 3.94579 3.97984 4.06730 4.11867 4.35501 4.36321 4.38562 4.44473 4.47085 4.51226 4.58513 4.70913 4.81853 4.86576 4.93213 4.95505 4.99651 5.01702 5.08713 5.11454 5.20659 5.23367 5.29043 5.37020 5.44783 5.61999 5.88188 6.13399 6.18471 6.52645 6.94593 7.18948 7.65310 8.04650 9.04462 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026180 B = 0.001987 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.270413 B =14091.722121 C =14530.980997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.156 3.844 3 H 0.059 0.941 4 N -0.701 5.701 5 C 0.513 3.487 6 O -0.574 6.574 7 C 0.045 3.955 8 O -0.312 6.312 9 C 0.094 3.906 10 C -0.169 4.169 11 C -0.179 4.179 12 S 0.141 5.859 13 C -0.329 4.329 14 C -0.074 4.074 15 C -0.118 4.118 16 C 0.143 3.857 17 N -0.622 5.622 18 C -0.248 4.248 19 H 0.045 0.955 20 C -0.042 4.042 21 N -0.961 5.961 22 Si 0.953 3.047 23 H -0.274 1.274 24 H -0.314 1.314 25 H -0.255 1.255 26 C 0.120 3.880 27 C -0.122 4.122 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.419 0.581 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.149 0.851 35 H 0.199 0.801 36 H 0.187 0.813 37 H 0.097 0.903 38 H 0.036 0.964 39 H 0.090 0.910 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.261 0.739 43 H 0.041 0.959 44 H 0.044 0.956 45 H 0.088 0.912 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.263 -9.257 31.415 33.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 H 0.077 0.923 4 N -0.355 5.355 5 C 0.300 3.700 6 O -0.452 6.452 7 C -0.033 4.033 8 O -0.226 6.226 9 C 0.038 3.962 10 C -0.200 4.200 11 C -0.314 4.314 12 S 0.401 5.599 13 C -0.465 4.465 14 C -0.093 4.093 15 C -0.157 4.157 16 C 0.018 3.982 17 N -0.347 5.347 18 C -0.378 4.378 19 H 0.063 0.937 20 C -0.236 4.236 21 N -0.607 5.607 22 Si 0.781 3.219 23 H -0.201 1.201 24 H -0.243 1.243 25 H -0.179 1.179 26 C -0.005 4.005 27 C -0.161 4.161 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.257 0.743 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.167 0.833 35 H 0.216 0.784 36 H 0.205 0.795 37 H 0.116 0.884 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.107 0.893 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.979 -9.432 32.071 33.960 hybrid contribution -0.594 0.861 -2.012 2.268 sum -6.572 -8.571 30.059 31.940 Atomic orbital electron populations 1.22171 0.94158 1.03282 1.02092 1.20863 0.94604 0.96182 0.83225 0.92319 1.45739 1.66701 1.14850 1.08199 1.20538 0.77518 0.86895 0.85089 1.90745 1.51018 1.18075 1.85384 1.22608 1.04904 0.92064 0.83747 1.86151 1.81715 1.38154 1.16543 1.18139 0.99157 0.92428 0.86525 1.19683 1.07034 1.02436 0.90870 1.25887 1.04796 0.97496 1.03247 1.84146 1.65026 1.08550 1.02156 1.25672 1.17115 1.00047 1.03628 1.21229 0.95384 1.00450 0.92206 1.21931 0.95335 1.00127 0.98281 1.21124 0.96574 0.95166 0.85329 1.44507 1.01825 1.71271 1.17123 1.18850 0.96916 1.35529 0.86499 0.93689 1.25985 1.01836 1.00165 0.95634 1.69989 1.45651 1.40789 1.04291 0.85815 0.79713 0.80659 0.75670 1.20095 1.24298 1.17900 1.21410 0.83754 0.97889 0.97438 1.21995 1.00941 0.98887 0.94298 0.90314 0.93655 0.90887 0.74286 0.85921 0.86372 0.83333 0.78431 0.79548 0.88448 0.94528 0.89205 0.93738 0.93367 0.93067 0.94106 0.93758 0.89337 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.13 71.98 0.66 -2.51 16 2 C 0.16 3.48 2.16 44.99 0.10 3.58 16 3 H 0.06 1.72 7.58 -2.39 -0.02 1.71 16 4 N -0.70 -11.94 4.36 -442.53 -1.93 -13.87 16 5 C 0.51 11.30 7.87 87.66 0.69 11.99 16 6 O -0.57 -19.19 16.16 15.99 0.26 -18.93 16 7 C 0.04 0.67 5.35 71.24 0.38 1.05 16 8 O -0.31 -7.03 9.74 -77.12 -0.75 -7.78 16 9 C 0.09 1.72 6.64 21.33 0.14 1.86 16 10 C -0.17 -2.77 10.17 21.29 0.22 -2.56 16 11 C -0.18 -2.03 11.22 66.73 0.75 -1.28 16 12 S 0.14 1.54 23.34 -56.49 -1.32 0.22 16 13 C -0.33 -4.40 10.09 66.77 0.67 -3.72 16 14 C -0.07 -1.77 1.79 -10.77 -0.02 -1.79 16 15 C -0.12 -3.26 5.22 30.67 0.16 -3.10 16 16 C 0.14 5.06 6.52 86.36 0.56 5.62 16 17 N -0.62 -28.38 2.77 -699.09 -1.94 -30.32 16 18 C -0.25 -14.14 10.03 84.03 0.84 -13.29 16 19 H 0.05 2.84 8.06 -2.91 -0.02 2.82 16 20 C -0.04 -2.47 5.23 84.86 0.44 -2.02 16 21 N -0.96 -61.20 13.97 21.65 0.30 -60.90 16 22 Si 0.95 46.14 24.35 68.60 1.67 47.81 16 23 H -0.27 -12.51 6.62 99.48 0.66 -11.85 16 24 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 25 H -0.25 -11.50 6.63 99.48 0.66 -10.84 16 26 C 0.12 4.78 4.20 86.36 0.36 5.15 16 27 C -0.12 -3.76 5.04 30.67 0.15 -3.61 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.45 6.40 -2.38 -0.02 1.44 16 31 H 0.42 3.96 8.39 -92.71 -0.78 3.18 16 32 H 0.12 1.01 7.86 -2.39 -0.02 0.99 16 33 H 0.12 1.12 7.85 -2.39 -0.02 1.10 16 34 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 35 H 0.20 1.04 8.06 -2.91 -0.02 1.01 16 36 H 0.19 1.53 7.02 -2.91 -0.02 1.50 16 37 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.82 7.41 -2.39 -0.02 1.80 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.81 7.93 -2.39 -0.02 1.79 16 42 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 43 H 0.04 1.51 7.07 -2.39 -0.02 1.50 16 44 H 0.04 2.02 4.50 -2.39 -0.01 2.01 16 45 H 0.09 2.23 6.36 -2.38 -0.02 2.22 16 46 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -79.85 375.41 2.53 -77.32 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.12 Total: 11.09 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 6.11 Total: -4.65 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -3.56 Total: -105.08 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.49 Total: -26.71 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.67 Total: 47.81 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -1.32 Total: 0.22 kcal Total: -79.85 2.53 -77.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571646301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.321 kcal (2) G-P(sol) polarization free energy of solvation -79.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds