Wall clock time and date at job start Tue Mar 31 2020 20:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47205 * 2 1 4 4 N 1.46502 * 109.47071 * 239.99996 * 2 1 3 5 5 C 1.34780 * 119.99987 * 85.00032 * 4 2 1 6 6 O 1.21288 * 119.99697 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00077 * 180.02562 * 5 4 2 8 8 S 1.81002 * 109.46942 * 179.97438 * 7 5 4 9 9 C 1.76207 * 99.99871 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00111 * 0.02562 * 9 8 7 11 11 C 1.38801 * 119.99755 * 179.72125 * 9 8 7 12 12 N 1.31624 * 120.00343 * 0.28413 * 11 9 8 13 13 Si 1.86803 * 119.99710 * 180.27886 * 11 9 8 14 14 H 1.48499 * 109.47241 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47103 * 120.00300 * 13 11 9 16 16 H 1.48504 * 109.46960 * 240.00411 * 13 11 9 17 17 C 1.52996 * 109.47406 * 120.00127 * 2 1 3 18 18 C 1.53946 * 113.74385 * 281.82362 * 17 2 1 19 19 N 1.47812 * 86.03592 * 222.08132 * 18 17 2 20 20 C 1.34777 * 134.45265 * 204.64117 * 19 18 17 21 21 O 1.21280 * 119.99828 * 179.86702 * 20 19 18 22 22 C 1.50694 * 120.00241 * 359.86629 * 20 19 18 23 23 H 1.09004 * 115.55100 * 34.33604 * 22 20 19 24 24 C 1.53003 * 117.50242 * 248.61885 * 22 20 19 25 25 C 1.52993 * 59.99871 * 252.50862 * 24 22 20 26 26 C 1.52996 * 138.58491 * 130.88633 * 25 24 22 27 27 C 1.52995 * 138.59110 * 229.09716 * 25 24 22 28 28 C 1.47582 * 91.05098 * 24.54661 * 19 18 17 29 29 H 1.08999 * 109.47150 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46887 * 300.06925 * 1 2 3 31 31 H 1.09007 * 109.47177 * 60.06069 * 1 2 3 32 32 H 0.96999 * 120.00515 * 265.00452 * 4 2 1 33 33 H 1.08993 * 109.47329 * 60.00117 * 7 5 4 34 34 H 1.09002 * 109.46785 * 299.99617 * 7 5 4 35 35 H 0.96995 * 120.00683 * 179.97438 * 12 11 9 36 36 H 1.09002 * 112.94463 * 53.41091 * 17 2 1 37 37 H 1.08999 * 113.76618 * 336.34749 * 18 17 2 38 38 H 1.09003 * 113.77046 * 107.73859 * 18 17 2 39 39 H 1.08997 * 117.49566 * 0.02562 * 24 22 20 40 40 H 1.08998 * 117.49816 * 145.02254 * 24 22 20 41 41 H 1.09000 * 117.50330 * 238.38226 * 26 25 24 42 42 H 1.09000 * 117.49787 * 23.40739 * 26 25 24 43 43 H 1.08997 * 117.49560 * 336.60495 * 27 25 24 44 44 H 1.09005 * 117.49601 * 121.62145 * 27 25 24 45 45 H 1.09001 * 113.76764 * 221.15351 * 28 19 18 46 46 H 1.09000 * 113.87209 * 89.76930 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8590 1.1587 -2.4115 7 6 2.6488 -0.7288 -3.5878 8 16 2.7091 0.4342 -4.9734 9 6 3.3124 -0.6310 -6.2408 10 1 3.5217 -1.6674 -6.0209 11 6 3.5126 -0.1395 -7.5234 12 7 3.2571 1.1235 -7.7916 13 14 4.1448 -1.2707 -8.8689 14 1 4.3533 -2.6321 -8.3136 15 1 3.1517 -1.3319 -9.9713 16 1 5.4326 -0.7472 -9.3911 17 6 2.0400 -0.7212 1.2492 18 6 1.9745 0.1329 2.5283 19 7 3.3099 -0.4180 2.8416 20 6 4.0082 -0.6114 3.9779 21 8 5.1168 -1.1011 3.9324 22 6 3.4116 -0.2193 5.3050 23 1 2.3325 -0.3464 5.3913 24 6 4.0457 0.9612 6.0435 25 6 4.2541 -0.4643 6.5584 26 6 5.4063 -1.3647 7.0085 27 6 4.1531 -1.2345 7.8765 28 6 3.5701 -0.6730 1.4114 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3634 0.5129 -0.8906 32 1 2.2489 -1.6318 -1.1527 33 1 1.9759 -1.5505 -3.8326 34 1 3.6479 -1.1213 -3.3986 35 1 3.3973 1.4671 -8.6878 36 1 1.6176 -1.7193 1.3659 37 1 1.9751 1.2065 2.3401 38 1 1.1954 -0.1777 3.2245 39 1 4.8941 1.4545 5.5692 40 1 3.3836 1.6112 6.6157 41 1 5.5516 -2.3022 6.4718 42 1 6.3159 -0.8792 7.3619 43 1 4.2382 -0.6633 8.8009 44 1 3.4739 -2.0864 7.9108 45 1 4.0627 -1.6259 1.2177 46 1 4.0408 0.1622 0.8929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571933099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:33 Heat of formation + Delta-G solvation = 20.128382 kcal Electronic energy + Delta-G solvation = -25733.228934 eV Core-core repulsion = 21945.370763 eV Total energy + Delta-G solvation = -3787.858172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91714 -39.58592 -38.71389 -37.29984 -35.02655 -33.06315 -32.43984 -31.60130 -29.39363 -28.52785 -26.58615 -25.50306 -24.79002 -22.99095 -22.77157 -20.86021 -20.39973 -20.01979 -18.89051 -17.89409 -17.51006 -16.75968 -16.42609 -16.07549 -15.48524 -15.36165 -15.11770 -15.01199 -14.81322 -14.35103 -14.13941 -13.83060 -13.66736 -13.21659 -13.05617 -12.82158 -12.76072 -12.55227 -12.39289 -12.07708 -12.01253 -11.86237 -11.77411 -11.23314 -11.07762 -11.04776 -11.02791 -10.76070 -10.63277 -10.54869 -10.41097 -9.97137 -9.81300 -9.42371 -9.09439 -9.06039 -8.93980 -8.24780 -6.51178 -6.22944 -3.93408 2.16676 2.33538 2.95805 3.05537 3.21007 3.26575 3.27710 3.31044 3.32798 3.60327 3.83731 4.01136 4.13904 4.19403 4.33557 4.39655 4.54775 4.64128 4.80319 4.92412 4.97280 5.07606 5.10611 5.12531 5.13806 5.22232 5.22433 5.23864 5.24229 5.26735 5.33640 5.42163 5.51146 5.55945 5.60250 5.64317 5.74714 5.79194 5.87195 5.94935 6.12275 6.14402 6.59334 7.33602 7.59020 7.66381 7.87201 8.34447 8.57611 9.22788 10.84540 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023633 B = 0.001783 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.502688 B =15703.542546 C =16364.938413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.092 0.908 4 N -0.735 5.735 5 C 0.535 3.465 6 O -0.517 6.517 7 C -0.154 4.154 8 S -0.061 6.061 9 C -0.535 4.535 10 H 0.073 0.927 11 C 0.074 3.926 12 N -0.867 5.867 13 Si 0.918 3.082 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.131 4.131 18 C 0.114 3.886 19 N -0.644 5.644 20 C 0.563 3.437 21 O -0.533 6.533 22 C -0.137 4.137 23 H 0.122 0.878 24 C -0.099 4.099 25 C -0.204 4.204 26 C -0.113 4.113 27 C -0.129 4.129 28 C 0.115 3.885 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.398 0.602 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.268 0.732 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.983 -4.695 29.929 30.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 H 0.110 0.890 4 N -0.389 5.389 5 C 0.321 3.679 6 O -0.391 6.391 7 C -0.305 4.305 8 S 0.166 5.834 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.151 4.151 18 C -0.010 4.010 19 N -0.380 5.380 20 C 0.352 3.648 21 O -0.409 6.409 22 C -0.157 4.157 23 H 0.140 0.860 24 C -0.136 4.136 25 C -0.204 4.204 26 C -0.150 4.150 27 C -0.165 4.165 28 C -0.007 4.007 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.232 0.768 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.102 0.898 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.740 -2.876 29.863 30.234 hybrid contribution 0.686 -2.504 -0.914 2.753 sum -3.054 -5.380 28.949 29.602 Atomic orbital electron populations 1.22175 0.94907 1.02235 1.02849 1.20826 0.94350 0.97287 0.82755 0.88976 1.46045 1.69505 1.13976 1.09387 1.20304 0.76704 0.87201 0.83712 1.90703 1.48251 1.15738 1.84368 1.23538 1.03709 1.04881 0.98366 1.85386 1.86288 1.12924 0.98802 1.22912 1.50954 0.98225 0.96261 0.90869 1.24989 0.95071 0.95540 0.97967 1.70019 1.45620 1.13242 1.21401 0.86122 0.78518 0.80159 0.80731 1.19618 1.20562 1.20564 1.23494 0.96202 1.00947 0.94456 1.23274 0.84263 0.99080 0.94352 1.49995 1.19191 1.62846 1.05968 1.19367 0.84168 0.77855 0.83392 1.90717 1.19349 1.44269 1.86611 1.21873 0.99104 1.05436 0.89331 0.85993 1.22668 1.01964 0.89019 0.99957 1.21186 1.05082 0.98389 0.95761 1.22611 0.91902 0.99974 1.00519 1.22773 1.00854 1.00792 0.92118 1.23206 0.95754 1.02658 0.79078 0.92425 0.91808 0.91385 0.76814 0.89227 0.89206 0.92230 0.87373 0.88893 0.89568 0.88042 0.87440 0.88184 0.88438 0.88236 0.88509 0.89791 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.44 37.16 0.35 -1.08 16 2 C 0.15 1.44 2.29 -67.93 -0.16 1.29 16 3 H 0.09 1.04 7.48 -51.93 -0.39 0.65 16 4 N -0.73 -8.50 4.94 -53.81 -0.27 -8.77 16 5 C 0.53 9.23 7.81 -10.99 -0.09 9.14 16 6 O -0.52 -10.98 15.52 5.55 0.09 -10.89 16 7 C -0.15 -2.99 6.16 36.00 0.22 -2.77 16 8 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 9 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 10 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 11 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 13 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 C -0.13 -0.90 3.35 -89.70 -0.30 -1.20 16 18 C 0.11 0.68 8.08 -2.84 -0.02 0.66 16 19 N -0.64 -5.97 3.61 -178.16 -0.64 -6.61 16 20 C 0.56 6.37 7.84 -10.99 -0.09 6.28 16 21 O -0.53 -8.15 16.97 5.56 0.09 -8.05 16 22 C -0.14 -1.13 5.94 -91.78 -0.54 -1.67 16 23 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 24 C -0.10 -0.71 10.23 -26.73 -0.27 -0.99 16 25 C -0.20 -1.70 5.05 -154.52 -0.78 -2.48 16 26 C -0.11 -0.94 10.16 -26.73 -0.27 -1.21 16 27 C -0.13 -0.81 10.53 -26.73 -0.28 -1.09 16 28 C 0.12 1.04 8.27 -2.97 -0.02 1.02 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.40 3.57 8.60 -40.82 -0.35 3.22 16 33 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 34 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.51 8.03 -51.93 -0.42 0.09 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 406.28 15.07 6.12 6.12 Total: -1.00 -36.83 406.28 -10.63 -47.46 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.46 Total: 0.47 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.06 Total: -6.93 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: -0.18 Total: -40.64 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.18 Total: -18.94 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.83 -10.63 -47.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571933099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.587 kcal (2) G-P(sol) polarization free energy of solvation -36.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds