Wall clock time and date at job start Tue Mar 31 2020 20:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47205 * 2 1 4 4 N 1.46502 * 109.47071 * 239.99996 * 2 1 3 5 5 C 1.34780 * 119.99987 * 85.00032 * 4 2 1 6 6 O 1.21288 * 119.99697 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00077 * 180.02562 * 5 4 2 8 8 S 1.81002 * 109.46942 * 179.97438 * 7 5 4 9 9 C 1.76207 * 99.99871 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00111 * 0.02562 * 9 8 7 11 11 C 1.38801 * 119.99755 * 179.72125 * 9 8 7 12 12 N 1.31624 * 120.00343 * 0.28413 * 11 9 8 13 13 Si 1.86803 * 119.99710 * 180.27886 * 11 9 8 14 14 H 1.48499 * 109.47241 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47103 * 120.00300 * 13 11 9 16 16 H 1.48504 * 109.46960 * 240.00411 * 13 11 9 17 17 C 1.52996 * 109.47406 * 120.00127 * 2 1 3 18 18 C 1.53946 * 113.74385 * 281.82362 * 17 2 1 19 19 N 1.47812 * 86.03592 * 222.08132 * 18 17 2 20 20 C 1.34777 * 134.45265 * 204.64117 * 19 18 17 21 21 O 1.21280 * 119.99828 * 179.86702 * 20 19 18 22 22 C 1.50694 * 120.00241 * 359.86629 * 20 19 18 23 23 H 1.09004 * 115.55100 * 34.33604 * 22 20 19 24 24 C 1.53003 * 117.50242 * 248.61885 * 22 20 19 25 25 C 1.52993 * 59.99871 * 252.50862 * 24 22 20 26 26 C 1.52996 * 138.58491 * 130.88633 * 25 24 22 27 27 C 1.52995 * 138.59110 * 229.09716 * 25 24 22 28 28 C 1.47582 * 91.05098 * 24.54661 * 19 18 17 29 29 H 1.08999 * 109.47150 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46887 * 300.06925 * 1 2 3 31 31 H 1.09007 * 109.47177 * 60.06069 * 1 2 3 32 32 H 0.96999 * 120.00515 * 265.00452 * 4 2 1 33 33 H 1.08993 * 109.47329 * 60.00117 * 7 5 4 34 34 H 1.09002 * 109.46785 * 299.99617 * 7 5 4 35 35 H 0.96995 * 120.00683 * 179.97438 * 12 11 9 36 36 H 1.09002 * 112.94463 * 53.41091 * 17 2 1 37 37 H 1.08999 * 113.76618 * 336.34749 * 18 17 2 38 38 H 1.09003 * 113.77046 * 107.73859 * 18 17 2 39 39 H 1.08997 * 117.49566 * 0.02562 * 24 22 20 40 40 H 1.08998 * 117.49816 * 145.02254 * 24 22 20 41 41 H 1.09000 * 117.50330 * 238.38226 * 26 25 24 42 42 H 1.09000 * 117.49787 * 23.40739 * 26 25 24 43 43 H 1.08997 * 117.49560 * 336.60495 * 27 25 24 44 44 H 1.09005 * 117.49601 * 121.62145 * 27 25 24 45 45 H 1.09001 * 113.76764 * 221.15351 * 28 19 18 46 46 H 1.09000 * 113.87209 * 89.76930 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8590 1.1587 -2.4115 7 6 2.6488 -0.7288 -3.5878 8 16 2.7091 0.4342 -4.9734 9 6 3.3124 -0.6310 -6.2408 10 1 3.5217 -1.6674 -6.0209 11 6 3.5126 -0.1395 -7.5234 12 7 3.2571 1.1235 -7.7916 13 14 4.1448 -1.2707 -8.8689 14 1 4.3533 -2.6321 -8.3136 15 1 3.1517 -1.3319 -9.9713 16 1 5.4326 -0.7472 -9.3911 17 6 2.0400 -0.7212 1.2492 18 6 1.9745 0.1329 2.5283 19 7 3.3099 -0.4180 2.8416 20 6 4.0082 -0.6114 3.9779 21 8 5.1168 -1.1011 3.9324 22 6 3.4116 -0.2193 5.3050 23 1 2.3325 -0.3464 5.3913 24 6 4.0457 0.9612 6.0435 25 6 4.2541 -0.4643 6.5584 26 6 5.4063 -1.3647 7.0085 27 6 4.1531 -1.2345 7.8765 28 6 3.5701 -0.6730 1.4114 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3634 0.5129 -0.8906 32 1 2.2489 -1.6318 -1.1527 33 1 1.9759 -1.5505 -3.8326 34 1 3.6479 -1.1213 -3.3986 35 1 3.3973 1.4671 -8.6878 36 1 1.6176 -1.7193 1.3659 37 1 1.9751 1.2065 2.3401 38 1 1.1954 -0.1777 3.2245 39 1 4.8941 1.4545 5.5692 40 1 3.3836 1.6112 6.6157 41 1 5.5516 -2.3022 6.4718 42 1 6.3159 -0.8792 7.3619 43 1 4.2382 -0.6633 8.8009 44 1 3.4739 -2.0864 7.9108 45 1 4.0627 -1.6259 1.2177 46 1 4.0408 0.1622 0.8929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571933099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:32 Heat of formation + Delta-G solvation = -4.509514 kcal Electronic energy + Delta-G solvation = -25734.297314 eV Core-core repulsion = 21945.370763 eV Total energy + Delta-G solvation = -3788.926551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68337 -40.64414 -39.61865 -38.07961 -36.10334 -34.58541 -33.66949 -32.72191 -30.40951 -29.64010 -27.66891 -27.20268 -25.52933 -23.74582 -23.30999 -21.69632 -21.55878 -20.67714 -19.79518 -19.56794 -18.26818 -17.77780 -17.70670 -16.88422 -16.87847 -16.37985 -16.31968 -15.96898 -15.91603 -15.68459 -15.15658 -14.81363 -14.65965 -14.50315 -14.29130 -13.86701 -13.66034 -13.40107 -13.20120 -13.15765 -13.02134 -12.91575 -12.73601 -12.67665 -12.54216 -12.39077 -11.95148 -11.78255 -11.69177 -11.21967 -11.15965 -11.13835 -10.97750 -10.90633 -10.72870 -10.26269 -10.07999 -9.78780 -8.65397 -8.35021 -6.12249 1.27792 1.38503 1.40716 1.47421 1.58277 1.65393 1.66608 2.24485 2.29585 2.69475 2.74574 2.99282 3.25621 3.29156 3.36687 3.50146 3.68225 3.80094 3.94235 4.02393 4.08690 4.15381 4.32386 4.35873 4.44283 4.45220 4.48491 4.53777 4.54874 4.59436 4.65047 4.71345 4.74583 4.77551 4.81438 4.85432 4.99024 5.01956 5.05891 5.21129 5.24303 5.40350 5.42267 5.56666 6.19969 6.54971 6.61517 7.06260 7.06791 7.30062 8.74360 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023633 B = 0.001783 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.502688 B =15703.542546 C =16364.938413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.073 0.927 4 N -0.710 5.710 5 C 0.538 3.462 6 O -0.563 6.563 7 C -0.132 4.132 8 S -0.150 6.150 9 C -0.546 4.546 10 H 0.082 0.918 11 C 0.014 3.986 12 N -0.911 5.911 13 Si 0.997 3.003 14 H -0.258 1.258 15 H -0.273 1.273 16 H -0.275 1.275 17 C -0.109 4.109 18 C 0.119 3.881 19 N -0.645 5.645 20 C 0.552 3.448 21 O -0.587 6.587 22 C -0.137 4.137 23 H 0.151 0.849 24 C -0.089 4.089 25 C -0.229 4.229 26 C -0.137 4.137 27 C -0.102 4.102 28 C 0.102 3.898 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.415 0.585 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.271 0.729 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 -6.432 31.970 33.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.091 0.909 4 N -0.363 5.363 5 C 0.323 3.677 6 O -0.441 6.441 7 C -0.283 4.283 8 S 0.077 5.923 9 C -0.694 4.694 10 H 0.100 0.900 11 C -0.191 4.191 12 N -0.547 5.547 13 Si 0.819 3.181 14 H -0.181 1.181 15 H -0.198 1.198 16 H -0.200 1.200 17 C -0.128 4.128 18 C -0.003 4.003 19 N -0.380 5.380 20 C 0.343 3.657 21 O -0.468 6.468 22 C -0.158 4.158 23 H 0.169 0.831 24 C -0.126 4.126 25 C -0.230 4.230 26 C -0.174 4.174 27 C -0.138 4.138 28 C -0.021 4.021 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.252 0.748 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.150 0.850 37 H 0.118 0.882 38 H 0.139 0.861 39 H 0.103 0.897 40 H 0.155 0.845 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.137 0.863 44 H 0.124 0.876 45 H 0.096 0.904 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.313 -4.643 31.941 32.711 hybrid contribution 1.172 -1.981 -1.450 2.721 sum -4.142 -6.625 30.491 31.476 Atomic orbital electron populations 1.22134 0.93660 1.03253 1.02580 1.20977 0.95171 0.96483 0.82489 0.90931 1.45813 1.67577 1.14602 1.08347 1.19945 0.76624 0.86529 0.84564 1.90694 1.50645 1.17627 1.85136 1.23396 1.05424 1.03251 0.96267 1.85535 1.86636 1.17350 1.02793 1.23248 1.50865 0.98510 0.96812 0.90017 1.26100 0.95069 0.97181 1.00731 1.70177 1.46923 1.15454 1.22170 0.84929 0.77845 0.78239 0.77082 1.18123 1.19847 1.20033 1.23363 0.94006 1.02013 0.93404 1.23514 0.83319 0.99390 0.94082 1.50125 1.20270 1.62127 1.05440 1.20015 0.83692 0.77115 0.84856 1.90686 1.21751 1.46815 1.87509 1.21949 1.00317 1.06037 0.87467 0.83104 1.22746 1.01720 0.88770 0.99373 1.21468 1.05283 0.99311 0.96928 1.22598 0.93021 0.99564 1.02176 1.22854 0.98761 1.00449 0.91747 1.23264 0.97471 1.01836 0.79490 0.90716 0.88883 0.94891 0.74836 0.87295 0.87535 0.92005 0.85005 0.88152 0.86075 0.89668 0.84514 0.90164 0.88358 0.86321 0.87551 0.90397 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.44 71.98 0.68 -1.68 16 2 C 0.15 2.58 2.29 44.99 0.10 2.68 16 3 H 0.07 1.58 7.48 -2.38 -0.02 1.56 16 4 N -0.71 -15.30 4.94 -442.53 -2.19 -17.48 16 5 C 0.54 18.46 7.81 87.66 0.68 19.14 16 6 O -0.56 -24.60 15.52 -3.05 -0.05 -24.65 16 7 C -0.13 -5.07 6.16 71.23 0.44 -4.63 16 8 S -0.15 -8.25 20.57 -56.49 -1.16 -9.42 16 9 C -0.55 -31.14 9.50 67.95 0.65 -30.49 16 10 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 11 C 0.01 0.79 5.49 84.86 0.47 1.26 16 12 N -0.91 -55.85 13.22 21.65 0.29 -55.57 16 13 Si 1.00 43.67 29.55 68.60 2.03 45.69 16 14 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 17 C -0.11 -1.16 3.35 -10.14 -0.03 -1.19 16 18 C 0.12 1.01 8.08 86.44 0.70 1.71 16 19 N -0.65 -10.92 3.61 -835.96 -3.02 -13.94 16 20 C 0.55 12.14 7.84 87.66 0.69 12.83 16 21 O -0.59 -18.60 16.97 -3.03 -0.05 -18.65 16 22 C -0.14 -1.99 5.94 -11.54 -0.07 -2.06 16 23 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 24 C -0.09 -1.12 10.23 30.59 0.31 -0.80 16 25 C -0.23 -3.52 5.05 -52.19 -0.26 -3.78 16 26 C -0.14 -2.28 10.16 30.59 0.31 -1.97 16 27 C -0.10 -1.07 10.53 30.59 0.32 -0.75 16 28 C 0.10 1.75 8.27 86.48 0.72 2.47 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.86 8.09 -2.39 -0.02 0.84 16 31 H 0.03 0.74 8.14 -2.38 -0.02 0.73 16 32 H 0.41 6.34 8.60 -92.71 -0.80 5.54 16 33 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 34 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 35 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 0.78 8.03 -2.39 -0.02 0.76 16 38 H 0.12 0.29 8.14 -2.39 -0.02 0.28 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.08 1.52 8.10 -2.39 -0.02 1.51 16 Total: -1.00 -85.82 406.28 1.73 -84.09 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.18 Total: 17.17 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 5.70 Total: -7.25 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -4.92 Total: -86.99 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -0.10 Total: -43.30 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.42 kcal Total: -85.82 1.73 -84.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571933099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.584 kcal (2) G-P(sol) polarization free energy of solvation -85.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds