Wall clock time and date at job start Tue Mar 31 2020 20:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46729 * 2 1 4 4 N 1.46500 * 109.46926 * 119.99480 * 2 1 3 5 5 C 1.34776 * 120.00353 * 274.99969 * 4 2 1 6 6 O 1.21279 * 119.99639 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00234 * 180.02562 * 5 4 2 8 8 S 1.80995 * 109.47215 * 180.02562 * 7 5 4 9 9 C 1.76201 * 99.99988 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99966 * 359.97438 * 9 8 7 11 11 C 1.38794 * 119.99727 * 179.97438 * 9 8 7 12 12 N 1.31643 * 119.99726 * 180.02562 * 11 9 8 13 13 Si 1.86792 * 120.00463 * 359.97438 * 11 9 8 14 14 H 1.48508 * 109.47089 * 89.99864 * 13 11 9 15 15 H 1.48504 * 109.47500 * 210.00006 * 13 11 9 16 16 H 1.48500 * 109.47012 * 330.00168 * 13 11 9 17 17 C 1.52999 * 109.47241 * 239.99754 * 2 1 3 18 18 C 1.53500 * 114.20631 * 174.86712 * 17 2 1 19 19 N 1.47066 * 87.98318 * 220.34811 * 18 17 2 20 20 C 1.34780 * 136.05282 * 207.09005 * 19 18 17 21 21 O 1.21280 * 120.00013 * 359.97438 * 20 19 18 22 22 C 1.50697 * 119.99817 * 179.97438 * 20 19 18 23 23 H 1.08998 * 115.55059 * 325.58009 * 22 20 19 24 24 C 1.53003 * 117.50088 * 111.24980 * 22 20 19 25 25 C 1.52993 * 117.50034 * 179.90912 * 22 20 19 26 26 C 1.52991 * 138.59015 * 121.61548 * 25 22 20 27 27 C 1.52992 * 138.58737 * 23.39861 * 25 22 20 28 28 C 1.47064 * 87.88979 * 27.34240 * 19 18 17 29 29 H 1.08993 * 109.47409 * 64.94831 * 1 2 3 30 30 H 1.09007 * 109.47068 * 184.94591 * 1 2 3 31 31 H 1.09001 * 109.47255 * 304.94421 * 1 2 3 32 32 H 0.97001 * 119.99535 * 95.00966 * 4 2 1 33 33 H 1.09002 * 109.46544 * 299.99910 * 7 5 4 34 34 H 1.09000 * 109.46924 * 59.99546 * 7 5 4 35 35 H 0.97000 * 119.99756 * 180.02562 * 12 11 9 36 36 H 1.09001 * 113.41482 * 308.07016 * 17 2 1 37 37 H 1.08992 * 113.46380 * 105.56366 * 18 17 2 38 38 H 1.09003 * 113.52028 * 335.13413 * 18 17 2 39 39 H 1.08997 * 117.50173 * 214.97777 * 24 22 20 40 40 H 1.08999 * 117.50020 * 359.97438 * 24 22 20 41 41 H 1.08999 * 117.49845 * 336.60095 * 26 25 22 42 42 H 1.09000 * 117.50124 * 121.61849 * 26 25 22 43 43 H 1.09004 * 117.50239 * 238.38397 * 27 25 22 44 44 H 1.09002 * 117.49700 * 23.38669 * 27 25 22 45 45 H 1.08997 * 113.46962 * 87.43364 * 28 19 18 46 46 H 1.08996 * 113.47208 * 217.87953 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8582 1.1585 2.4116 7 6 2.6498 -0.7283 3.5876 8 16 2.7099 0.4345 4.9732 9 6 3.3131 -0.6306 6.2406 10 1 3.5225 -1.6670 6.0207 11 6 3.5191 -0.1376 7.5216 12 7 3.9702 -0.9333 8.4684 13 14 3.1576 1.6551 7.9019 14 1 1.7465 1.7925 8.3441 15 1 4.0626 2.1244 8.9817 16 1 3.3760 2.4736 6.6823 17 6 2.0400 -0.7213 -1.2492 18 6 3.5645 -0.6771 -1.4232 19 7 3.3421 -0.4655 -2.8614 20 6 4.0236 -0.7190 -3.9963 21 8 5.1101 -1.2552 -3.9443 22 6 3.4353 -0.3360 -5.3298 23 1 2.3513 -0.4195 -5.4069 24 6 4.1131 0.7981 -6.1015 25 6 4.2586 -0.6483 -6.5810 26 6 4.1166 -1.4469 -7.8782 27 6 5.3689 -1.6077 -7.0140 28 6 2.0520 0.1501 -2.5160 29 1 -0.3634 0.4351 -0.9309 30 1 -0.3633 -1.0239 0.0886 31 1 -0.3634 0.5886 0.8424 32 1 2.2491 -1.6317 1.1527 33 1 1.9775 -1.5506 3.8326 34 1 3.6491 -1.1202 3.3980 35 1 4.1138 -0.5889 9.3637 36 1 1.6029 -1.7102 -1.3872 37 1 4.0550 -1.6231 -1.1943 38 1 4.0345 0.1721 -0.9271 39 1 3.4751 1.4604 -6.6866 40 1 4.9843 1.2675 -5.6445 41 1 3.4019 -2.2699 -7.8868 42 1 4.2196 -0.9037 -8.8175 43 1 6.2958 -1.1702 -7.3848 44 1 5.4783 -2.5363 -6.4539 45 1 2.1223 1.2177 -2.3077 46 1 1.2540 -0.0913 -3.2181 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571933101.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:38 Heat of formation + Delta-G solvation = 24.461468 kcal Electronic energy + Delta-G solvation = -25764.900046 eV Core-core repulsion = 21977.229771 eV Total energy + Delta-G solvation = -3787.670275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07485 -39.67120 -38.86041 -37.35883 -35.15565 -33.09591 -32.44788 -31.71195 -29.53247 -28.63531 -26.44495 -25.62785 -24.91376 -23.07155 -22.79316 -21.00054 -20.50959 -20.07686 -18.93113 -17.93502 -17.53046 -16.77548 -16.54444 -16.12167 -15.53375 -15.39079 -15.20305 -15.12814 -14.95207 -14.45741 -14.12131 -13.89455 -13.68333 -13.38644 -13.04088 -12.92881 -12.80604 -12.71548 -12.49376 -12.13720 -12.11424 -11.89600 -11.85262 -11.28383 -11.22534 -11.01990 -10.99954 -10.66479 -10.61082 -10.58007 -10.43974 -10.04578 -9.86654 -9.55392 -9.14086 -9.04600 -8.99832 -8.51909 -6.93176 -6.29814 -4.01802 2.12025 2.30672 2.71064 2.92401 3.20744 3.25038 3.30560 3.32098 3.49152 3.57561 3.80841 3.94156 4.08517 4.29609 4.32029 4.36005 4.50945 4.58939 4.69835 4.76648 4.89000 4.95158 5.03719 5.09205 5.09254 5.11579 5.17460 5.20626 5.21029 5.24221 5.28683 5.31197 5.37335 5.50713 5.53937 5.54904 5.69145 5.74412 5.77216 5.87453 5.99786 6.07734 6.49485 7.32551 7.55569 7.82489 7.93194 8.40829 8.44401 9.16277 10.79402 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025215 B = 0.001816 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.173364 B =15417.476001 C =15883.351509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.157 3.843 3 H 0.093 0.907 4 N -0.733 5.733 5 C 0.534 3.466 6 O -0.519 6.519 7 C -0.125 4.125 8 S -0.142 6.142 9 C -0.522 4.522 10 H 0.088 0.912 11 C 0.096 3.904 12 N -0.880 5.880 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.235 1.235 17 C -0.134 4.134 18 C 0.111 3.889 19 N -0.647 5.647 20 C 0.570 3.430 21 O -0.531 6.531 22 C -0.136 4.136 23 H 0.123 0.877 24 C -0.099 4.099 25 C -0.204 4.204 26 C -0.128 4.128 27 C -0.113 4.113 28 C 0.112 3.888 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.400 0.600 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.271 0.729 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.459 -0.147 -32.057 32.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.051 3.949 3 H 0.111 0.889 4 N -0.387 5.387 5 C 0.320 3.680 6 O -0.393 6.393 7 C -0.276 4.276 8 S 0.085 5.915 9 C -0.670 4.670 10 H 0.106 0.894 11 C -0.113 4.113 12 N -0.516 5.516 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.199 1.199 16 H -0.159 1.159 17 C -0.154 4.154 18 C -0.011 4.011 19 N -0.382 5.382 20 C 0.359 3.641 21 O -0.407 6.407 22 C -0.157 4.157 23 H 0.141 0.859 24 C -0.136 4.136 25 C -0.204 4.204 26 C -0.165 4.165 27 C -0.150 4.150 28 C -0.012 4.012 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.234 0.766 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.110 0.890 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.151 1.458 -31.954 32.399 hybrid contribution 0.226 -1.194 0.507 1.316 sum -4.925 0.264 -31.447 31.831 Atomic orbital electron populations 1.22174 0.94783 1.02531 1.02681 1.20773 0.94401 0.97167 0.82536 0.88943 1.46006 1.69288 1.14085 1.09309 1.20273 0.76776 0.87190 0.83794 1.90697 1.48447 1.15746 1.84408 1.23288 1.04529 1.03490 0.96268 1.84774 1.87158 1.16533 1.03081 1.22318 1.50632 0.98710 0.95293 0.89384 1.24717 0.93356 0.98281 0.94962 1.69945 1.43386 1.35798 1.02520 0.86732 0.79297 0.85234 0.80558 1.19223 1.19946 1.15934 1.23370 0.96433 1.00942 0.94638 1.23012 0.95859 1.03012 0.79263 1.49534 1.22142 1.60646 1.05895 1.19242 0.83663 0.78109 0.83047 1.90724 1.20445 1.42981 1.86555 1.21855 0.99119 1.05764 0.88934 0.85945 1.22686 1.01810 0.89261 0.99862 1.21202 1.05547 0.97591 0.96079 1.22775 1.00702 1.00629 0.92390 1.22619 0.92388 0.99407 1.00588 1.23070 0.85406 0.98322 0.94374 0.91746 0.92279 0.91425 0.76612 0.88490 0.88438 0.91941 0.87007 0.90063 0.89210 0.87414 0.88031 0.88480 0.88211 0.88410 0.88149 0.88980 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.48 37.16 0.35 -0.98 16 2 C 0.16 1.37 2.34 -67.93 -0.16 1.21 16 3 H 0.09 0.96 7.43 -51.93 -0.39 0.58 16 4 N -0.73 -7.93 4.96 -53.81 -0.27 -8.20 16 5 C 0.53 8.66 7.81 -10.99 -0.09 8.57 16 6 O -0.52 -10.35 15.52 5.56 0.09 -10.26 16 7 C -0.13 -2.31 6.16 36.01 0.22 -2.09 16 8 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 9 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 10 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 11 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 12 N -0.88 -26.43 13.97 55.49 0.78 -25.65 16 13 Si 0.86 21.62 27.74 -169.99 -4.71 16.90 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 17 C -0.13 -0.86 3.52 -89.97 -0.32 -1.17 16 18 C 0.11 0.96 8.07 -8.50 -0.07 0.89 16 19 N -0.65 -5.81 3.69 -185.03 -0.68 -6.49 16 20 C 0.57 6.30 7.86 -10.99 -0.09 6.21 16 21 O -0.53 -7.99 17.02 5.56 0.09 -7.89 16 22 C -0.14 -1.09 6.01 -91.78 -0.55 -1.64 16 23 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 24 C -0.10 -0.68 10.24 -26.69 -0.27 -0.96 16 25 C -0.20 -1.65 5.06 -154.49 -0.78 -2.43 16 26 C -0.13 -0.78 10.53 -26.74 -0.28 -1.06 16 27 C -0.11 -0.91 10.16 -26.74 -0.27 -1.18 16 28 C 0.11 0.64 7.99 -8.36 -0.07 0.57 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.40 3.34 8.60 -40.82 -0.35 2.99 16 33 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 34 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 35 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.84 8.11 -51.93 -0.42 0.42 16 39 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 0.48 8.00 -51.93 -0.42 0.06 16 46 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 403.76 15.07 6.08 6.08 Total: -1.00 -36.46 403.76 -10.26 -46.73 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.49 Total: 0.26 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -2.15 Total: -5.96 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: -0.17 Total: -40.35 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.18 Total: -18.16 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.90 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.46 -10.26 -46.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571933101.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.188 kcal (2) G-P(sol) polarization free energy of solvation -36.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds