Wall clock time and date at job start Tue Mar 31 2020 21:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47552 * 2 1 4 4 C 1.34946 * 126.03815 * 124.97267 * 3 2 1 5 5 C 1.35312 * 107.74527 * 179.75174 * 4 3 2 6 6 C 1.39872 * 107.92213 * 0.39458 * 5 4 3 7 7 C 1.50691 * 125.89968 * 179.86502 * 6 5 4 8 8 N 1.46500 * 109.47559 * 95.11213 * 7 6 5 9 9 C 1.34768 * 120.00607 * 184.72870 * 8 7 6 10 10 O 1.21668 * 119.99825 * 4.76672 * 9 8 7 11 11 C 1.46887 * 120.00450 * 184.76830 * 9 8 7 12 12 C 1.36119 * 125.44044 * 173.10537 * 11 9 8 13 13 C 1.41701 * 107.75382 * 180.24271 * 12 11 9 14 14 C 1.40017 * 133.35537 * 179.82239 * 13 12 11 15 15 C 1.36578 * 119.82905 * 179.97438 * 14 13 12 16 16 C 1.38847 * 120.60271 * 359.97438 * 15 14 13 17 17 C 1.37845 * 120.63600 * 359.97438 * 16 15 14 18 18 C 1.39087 * 119.81188 * 0.02906 * 17 16 15 19 19 N 1.37830 * 133.16453 * 180.02562 * 18 17 16 20 20 C 1.36892 * 125.62397 * 359.93411 * 19 18 17 21 21 H 1.07995 * 120.00280 * 135.98198 * 20 19 18 22 22 C 1.39013 * 119.99434 * 315.98561 * 20 19 18 23 23 N 1.31351 * 120.00091 * 340.37097 * 22 20 19 24 24 Si 1.86798 * 119.99879 * 160.09541 * 22 20 19 25 25 H 1.48504 * 109.47315 * 275.26400 * 24 22 20 26 26 H 1.48497 * 109.47347 * 35.26014 * 24 22 20 27 27 H 1.48498 * 109.47538 * 155.26190 * 24 22 20 28 28 N 1.30836 * 108.19769 * 359.59906 * 6 5 4 29 29 H 1.08996 * 109.46815 * 59.99875 * 1 2 3 30 30 H 1.08997 * 109.47546 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46974 * 300.00297 * 1 2 3 32 32 H 1.09001 * 109.46863 * 239.99216 * 2 1 3 33 33 H 1.09010 * 109.46837 * 119.99996 * 2 1 3 34 34 H 1.08002 * 126.12387 * 0.02562 * 4 3 2 35 35 H 1.08000 * 126.04219 * 180.27978 * 5 4 3 36 36 H 1.09000 * 109.47469 * 335.11004 * 7 6 5 37 37 H 1.09007 * 109.46989 * 215.11257 * 7 6 5 38 38 H 0.97003 * 119.99427 * 4.72777 * 8 7 6 39 39 H 1.08001 * 126.12810 * 0.02562 * 12 11 9 40 40 H 1.07999 * 120.08419 * 359.93986 * 14 13 12 41 41 H 1.08006 * 119.69547 * 180.02562 * 15 14 13 42 42 H 1.08009 * 119.68691 * 180.02562 * 16 15 14 43 43 H 1.08001 * 120.09644 * 180.02562 * 17 16 15 44 44 H 0.96991 * 119.99869 * 350.84005 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8728 1.9211 0.8942 5 6 3.0759 3.2120 0.5429 6 6 2.3127 3.4723 -0.5999 7 6 2.2364 4.7880 -1.3307 8 7 3.1916 4.7858 -2.4415 9 6 3.3679 5.8987 -3.1808 10 8 2.7998 6.9297 -2.8733 11 6 4.2461 5.8671 -4.3579 12 6 4.4007 6.8794 -5.2547 13 6 5.3267 6.4487 -6.2370 14 6 5.8609 7.0493 -7.3835 15 6 6.7585 6.3657 -8.1531 16 6 7.1481 5.0782 -7.8094 17 6 6.6370 4.4662 -6.6850 18 6 5.7214 5.1423 -5.8855 19 7 5.0506 4.8063 -4.7293 20 6 5.1578 3.6156 -4.0625 21 1 5.2482 3.6055 -2.9864 22 6 5.1505 2.4194 -4.7707 23 7 4.6665 2.3817 -5.9912 24 14 5.8362 0.8673 -3.9896 25 1 7.3067 0.8195 -4.1914 26 1 5.5362 0.8710 -2.5352 27 1 5.2110 -0.3225 -4.6209 28 7 1.6810 2.3746 -0.9282 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5140 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.3184 1.4126 1.7364 35 1 3.7132 3.9173 1.0556 36 1 2.4790 5.5994 -0.6445 37 1 1.2278 4.9299 -1.7190 38 1 3.6971 3.9833 -2.6449 39 1 3.9038 7.8378 -5.2250 40 1 5.5635 8.0504 -7.6587 41 1 7.1695 6.8313 -9.0368 42 1 7.8593 4.5513 -8.4285 43 1 6.9465 3.4645 -6.4255 44 1 4.1951 3.1498 -6.3499 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583905039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:29 Heat of formation + Delta-G solvation = 98.318915 kcal Electronic energy + Delta-G solvation = -28805.917696 eV Core-core repulsion = 24918.298920 eV Total energy + Delta-G solvation = -3887.618776 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.20256 -40.63930 -38.51679 -36.08887 -35.21510 -33.99332 -33.48554 -30.74172 -30.57181 -29.60953 -29.01988 -28.21099 -26.53683 -24.80112 -23.45103 -22.50373 -21.14070 -21.04489 -20.18929 -19.80977 -19.30644 -18.45414 -17.11800 -16.50759 -15.69049 -15.53191 -15.43120 -15.03249 -14.73349 -14.43997 -14.32689 -14.08707 -13.96710 -13.45243 -13.39732 -13.14248 -13.08516 -12.66697 -12.50272 -12.41014 -12.23303 -12.05311 -12.01868 -11.77025 -11.55213 -11.20401 -10.89682 -10.59270 -10.52651 -10.46268 -10.36386 -9.90183 -9.64212 -9.22549 -9.16127 -8.83626 -8.55425 -8.51190 -7.53770 -7.05026 -6.74400 -4.72149 1.71548 1.88093 2.45105 2.60710 2.69879 2.99450 3.03722 3.07902 3.21983 3.80360 4.04658 4.20155 4.31670 4.35994 4.68618 4.72148 4.74870 4.83935 4.88903 5.00205 5.24556 5.39896 5.55783 5.59403 5.70448 5.74552 5.82691 5.85243 5.90173 5.93007 6.06982 6.14007 6.29880 6.40364 6.54615 6.63607 6.76178 6.88393 6.96041 7.00148 7.01209 7.23772 7.38116 7.46718 7.57662 7.75082 7.77222 7.81351 8.14446 8.26190 8.64193 8.91961 9.09803 10.06993 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.003877 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.977787 B = 7220.841373 C = 8738.255378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.129 3.871 3 N -0.371 5.371 4 C 0.048 3.952 5 C -0.256 4.256 6 C 0.059 3.941 7 C 0.202 3.798 8 N -0.721 5.721 9 C 0.597 3.403 10 O -0.558 6.558 11 C -0.018 4.018 12 C -0.164 4.164 13 C -0.129 4.129 14 C -0.081 4.081 15 C -0.160 4.160 16 C -0.135 4.135 17 C -0.080 4.080 18 C 0.073 3.927 19 N -0.266 5.266 20 C -0.450 4.450 21 H 0.101 0.899 22 C 0.034 3.966 23 N -0.819 5.819 24 Si 1.074 2.926 25 H -0.274 1.274 26 H -0.278 1.278 27 H -0.274 1.274 28 N -0.269 5.269 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.173 0.827 35 H 0.148 0.852 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.420 0.580 39 H 0.135 0.865 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.017 -5.631 10.240 11.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.008 3.992 3 N -0.154 5.154 4 C -0.097 4.097 5 C -0.286 4.286 6 C -0.107 4.107 7 C 0.076 3.924 8 N -0.382 5.382 9 C 0.386 3.614 10 O -0.437 6.437 11 C -0.132 4.132 12 C -0.192 4.192 13 C -0.134 4.134 14 C -0.099 4.099 15 C -0.179 4.179 16 C -0.155 4.155 17 C -0.100 4.100 18 C -0.041 4.041 19 N 0.069 4.931 20 C -0.577 4.577 21 H 0.118 0.882 22 C -0.184 4.184 23 N -0.445 5.445 24 Si 0.897 3.103 25 H -0.199 1.199 26 H -0.204 1.204 27 H -0.199 1.199 28 N -0.093 5.093 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.190 0.810 35 H 0.166 0.834 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.266 0.734 39 H 0.153 0.847 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.134 0.866 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.965 -7.579 9.557 12.553 hybrid contribution 0.429 1.394 0.856 1.691 sum -2.536 -6.185 10.413 12.375 Atomic orbital electron populations 1.22052 0.93803 1.02761 1.03656 1.21700 0.96100 0.77569 1.03838 1.48741 1.35650 1.10066 1.20937 1.22508 0.95839 0.94885 0.96472 1.21409 1.08775 0.96804 1.01617 1.22257 0.97318 0.94840 0.96316 1.19422 0.94377 0.90284 0.88334 1.46693 1.43514 1.16510 1.31488 1.17201 0.80231 0.82787 0.81190 1.90720 1.50776 1.31385 1.70860 1.20219 1.00503 0.92701 0.99796 1.20416 1.03988 0.99101 0.95669 1.18021 1.02647 0.94719 0.98002 1.20122 0.97264 0.98598 0.93964 1.20325 1.01291 0.95715 1.00603 1.20600 1.02006 0.95622 0.97315 1.20149 0.96476 0.99144 0.94229 1.18453 0.98785 0.94437 0.92439 1.40123 1.25351 1.10391 1.17190 1.20426 1.60145 0.82966 0.94117 0.88171 1.26748 0.94725 1.01661 0.95218 1.70531 1.24328 1.34878 1.14739 0.83430 0.77242 0.74140 0.75456 1.19929 1.20374 1.19926 1.77360 1.23259 0.96415 1.12227 0.90897 0.90781 0.92200 0.89564 0.88717 0.80998 0.83402 0.89589 0.90715 0.73423 0.84738 0.87431 0.87563 0.87256 0.86552 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 10.10 37.16 0.38 -1.03 16 2 C 0.13 1.19 7.23 -4.04 -0.03 1.16 16 3 N -0.37 -4.89 3.68 -61.36 -0.23 -5.12 16 4 C 0.05 0.57 11.45 -17.23 -0.20 0.37 16 5 C -0.26 -3.51 10.74 -40.01 -0.43 -3.94 16 6 C 0.06 0.97 6.59 -82.41 -0.54 0.43 16 7 C 0.20 3.50 6.25 -5.20 -0.03 3.47 16 8 N -0.72 -14.96 5.48 -62.74 -0.34 -15.31 16 9 C 0.60 13.85 7.76 -12.76 -0.10 13.75 16 10 O -0.56 -13.46 16.83 5.22 0.09 -13.37 16 11 C -0.02 -0.43 6.76 -82.25 -0.56 -0.99 16 12 C -0.16 -3.85 10.55 -39.02 -0.41 -4.26 16 13 C -0.13 -3.01 6.16 -106.89 -0.66 -3.66 16 14 C -0.08 -1.62 10.06 -39.51 -0.40 -2.02 16 15 C -0.16 -3.02 9.97 -39.96 -0.40 -3.41 16 16 C -0.13 -2.70 10.02 -39.50 -0.40 -3.09 16 17 C -0.08 -1.85 8.80 -39.41 -0.35 -2.20 16 18 C 0.07 1.81 5.52 -83.83 -0.46 1.34 16 19 N -0.27 -6.69 2.52 -56.08 -0.14 -6.84 16 20 C -0.45 -11.04 7.64 -15.00 -0.11 -11.16 16 21 H 0.10 2.40 6.45 -52.49 -0.34 2.06 16 22 C 0.03 0.81 4.36 -17.47 -0.08 0.74 16 23 N -0.82 -21.37 12.17 55.50 0.68 -20.70 16 24 Si 1.07 21.23 29.97 -169.99 -5.09 16.13 16 25 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 26 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 27 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 28 N -0.27 -4.53 12.42 33.67 0.42 -4.11 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.55 8.07 -51.92 -0.42 0.13 16 34 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.42 9.15 4.32 -40.82 -0.18 8.97 16 39 H 0.13 2.90 8.06 -52.49 -0.42 2.48 16 40 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 42 H 0.11 1.87 8.06 -52.48 -0.42 1.44 16 43 H 0.12 2.77 6.99 -52.49 -0.37 2.40 16 44 H 0.29 8.08 7.36 -40.82 -0.30 7.78 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -30.85 374.69 -9.22 -40.07 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -5.47 Total: 18.12 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -4.77 Total: -14.52 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.38 Total: -52.07 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.09 Total: 16.13 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.85 -9.22 -40.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583905039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.385 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds