Wall clock time and date at job start Tue Mar 31 2020 21:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47552 * 2 1 4 4 C 1.34946 * 126.03815 * 124.97267 * 3 2 1 5 5 C 1.35312 * 107.74527 * 179.75174 * 4 3 2 6 6 C 1.39872 * 107.92213 * 0.39458 * 5 4 3 7 7 C 1.50691 * 125.89968 * 179.86502 * 6 5 4 8 8 N 1.46500 * 109.47559 * 95.11213 * 7 6 5 9 9 C 1.34768 * 120.00607 * 184.72870 * 8 7 6 10 10 O 1.21668 * 119.99825 * 4.76672 * 9 8 7 11 11 C 1.46887 * 120.00450 * 184.76830 * 9 8 7 12 12 C 1.36119 * 125.44044 * 173.10537 * 11 9 8 13 13 C 1.41701 * 107.75382 * 180.24271 * 12 11 9 14 14 C 1.40017 * 133.35537 * 179.82239 * 13 12 11 15 15 C 1.36578 * 119.82905 * 179.97438 * 14 13 12 16 16 C 1.38847 * 120.60271 * 359.97438 * 15 14 13 17 17 C 1.37845 * 120.63600 * 359.97438 * 16 15 14 18 18 C 1.39087 * 119.81188 * 0.02906 * 17 16 15 19 19 N 1.37830 * 133.16453 * 180.02562 * 18 17 16 20 20 C 1.36892 * 125.62397 * 359.93411 * 19 18 17 21 21 H 1.07995 * 120.00280 * 135.98198 * 20 19 18 22 22 C 1.39013 * 119.99434 * 315.98561 * 20 19 18 23 23 N 1.31351 * 120.00091 * 340.37097 * 22 20 19 24 24 Si 1.86798 * 119.99879 * 160.09541 * 22 20 19 25 25 H 1.48504 * 109.47315 * 275.26400 * 24 22 20 26 26 H 1.48497 * 109.47347 * 35.26014 * 24 22 20 27 27 H 1.48498 * 109.47538 * 155.26190 * 24 22 20 28 28 N 1.30836 * 108.19769 * 359.59906 * 6 5 4 29 29 H 1.08996 * 109.46815 * 59.99875 * 1 2 3 30 30 H 1.08997 * 109.47546 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46974 * 300.00297 * 1 2 3 32 32 H 1.09001 * 109.46863 * 239.99216 * 2 1 3 33 33 H 1.09010 * 109.46837 * 119.99996 * 2 1 3 34 34 H 1.08002 * 126.12387 * 0.02562 * 4 3 2 35 35 H 1.08000 * 126.04219 * 180.27978 * 5 4 3 36 36 H 1.09000 * 109.47469 * 335.11004 * 7 6 5 37 37 H 1.09007 * 109.46989 * 215.11257 * 7 6 5 38 38 H 0.97003 * 119.99427 * 4.72777 * 8 7 6 39 39 H 1.08001 * 126.12810 * 0.02562 * 12 11 9 40 40 H 1.07999 * 120.08419 * 359.93986 * 14 13 12 41 41 H 1.08006 * 119.69547 * 180.02562 * 15 14 13 42 42 H 1.08009 * 119.68691 * 180.02562 * 16 15 14 43 43 H 1.08001 * 120.09644 * 180.02562 * 17 16 15 44 44 H 0.96991 * 119.99869 * 350.84005 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8728 1.9211 0.8942 5 6 3.0759 3.2120 0.5429 6 6 2.3127 3.4723 -0.5999 7 6 2.2364 4.7880 -1.3307 8 7 3.1916 4.7858 -2.4415 9 6 3.3679 5.8987 -3.1808 10 8 2.7998 6.9297 -2.8733 11 6 4.2461 5.8671 -4.3579 12 6 4.4007 6.8794 -5.2547 13 6 5.3267 6.4487 -6.2370 14 6 5.8609 7.0493 -7.3835 15 6 6.7585 6.3657 -8.1531 16 6 7.1481 5.0782 -7.8094 17 6 6.6370 4.4662 -6.6850 18 6 5.7214 5.1423 -5.8855 19 7 5.0506 4.8063 -4.7293 20 6 5.1578 3.6156 -4.0625 21 1 5.2482 3.6055 -2.9864 22 6 5.1505 2.4194 -4.7707 23 7 4.6665 2.3817 -5.9912 24 14 5.8362 0.8673 -3.9896 25 1 7.3067 0.8195 -4.1914 26 1 5.5362 0.8710 -2.5352 27 1 5.2110 -0.3225 -4.6209 28 7 1.6810 2.3746 -0.9282 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5140 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.3184 1.4126 1.7364 35 1 3.7132 3.9173 1.0556 36 1 2.4790 5.5994 -0.6445 37 1 1.2278 4.9299 -1.7190 38 1 3.6971 3.9833 -2.6449 39 1 3.9038 7.8378 -5.2250 40 1 5.5635 8.0504 -7.6587 41 1 7.1695 6.8313 -9.0368 42 1 7.8593 4.5513 -8.4285 43 1 6.9465 3.4645 -6.4255 44 1 4.1951 3.1498 -6.3499 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583905039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:29 Heat of formation + Delta-G solvation = 80.796829 kcal Electronic energy + Delta-G solvation = -28806.677510 eV Core-core repulsion = 24918.298920 eV Total energy + Delta-G solvation = -3888.378590 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.46762 -42.19199 -40.26380 -37.78215 -36.53924 -35.58597 -34.88534 -32.44621 -31.78823 -30.89211 -30.47446 -29.82125 -27.88753 -26.64600 -24.72024 -23.76687 -22.78833 -22.10594 -21.88568 -21.31269 -20.83052 -20.11375 -18.34812 -17.96296 -17.49229 -17.04957 -16.83137 -16.43571 -16.23605 -15.94871 -15.66003 -15.60763 -15.19944 -14.89478 -14.83272 -14.71301 -14.40046 -14.20162 -14.02611 -13.73688 -13.51276 -13.41684 -13.13769 -12.95656 -12.81447 -12.48662 -12.29359 -12.19298 -12.17091 -12.02886 -11.60449 -11.57362 -11.34525 -11.01098 -10.60535 -10.36488 -10.19232 -9.57160 -9.39720 -8.85028 -8.52491 -6.63494 -0.02628 0.82359 0.94386 1.24280 1.40716 1.47600 1.53086 1.59044 1.66985 2.14608 2.37687 2.46222 2.59554 2.89517 3.18238 3.38822 3.75333 3.90891 3.99510 4.07699 4.08948 4.19773 4.31786 4.34772 4.40480 4.47232 4.60283 4.61353 4.69047 4.77753 4.80571 4.85265 4.89483 5.04636 5.06659 5.14646 5.20502 5.25531 5.32356 5.39379 5.55348 5.65616 5.72933 5.81904 6.02547 6.05687 6.15463 6.41125 6.46866 6.67021 6.81398 7.12532 7.25811 8.11191 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.003877 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.977787 B = 7220.841373 C = 8738.255378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 N -0.369 5.369 4 C 0.067 3.933 5 C -0.276 4.276 6 C 0.039 3.961 7 C 0.202 3.798 8 N -0.715 5.715 9 C 0.592 3.408 10 O -0.576 6.576 11 C -0.047 4.047 12 C -0.169 4.169 13 C -0.149 4.149 14 C -0.082 4.082 15 C -0.152 4.152 16 C -0.119 4.119 17 C -0.113 4.113 18 C 0.050 3.950 19 N -0.284 5.284 20 C -0.458 4.458 21 H 0.100 0.900 22 C 0.002 3.998 23 N -0.841 5.841 24 Si 1.118 2.882 25 H -0.261 1.261 26 H -0.261 1.261 27 H -0.276 1.276 28 N -0.316 5.316 29 H 0.040 0.960 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.140 0.860 34 H 0.223 0.777 35 H 0.162 0.838 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.415 0.585 39 H 0.147 0.853 40 H 0.140 0.860 41 H 0.153 0.847 42 H 0.143 0.857 43 H 0.099 0.901 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.526 -6.723 10.881 12.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.002 4.002 3 N -0.153 5.153 4 C -0.080 4.080 5 C -0.306 4.306 6 C -0.126 4.126 7 C 0.077 3.923 8 N -0.373 5.373 9 C 0.381 3.619 10 O -0.457 6.457 11 C -0.161 4.161 12 C -0.197 4.197 13 C -0.154 4.154 14 C -0.101 4.101 15 C -0.170 4.170 16 C -0.139 4.139 17 C -0.134 4.134 18 C -0.064 4.064 19 N 0.051 4.949 20 C -0.584 4.584 21 H 0.117 0.883 22 C -0.209 4.209 23 N -0.467 5.467 24 Si 0.935 3.065 25 H -0.185 1.185 26 H -0.185 1.185 27 H -0.201 1.201 28 N -0.140 5.140 29 H 0.059 0.941 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.158 0.842 34 H 0.240 0.760 35 H 0.180 0.820 36 H 0.116 0.884 37 H 0.084 0.916 38 H 0.260 0.740 39 H 0.165 0.835 40 H 0.158 0.842 41 H 0.171 0.829 42 H 0.161 0.839 43 H 0.117 0.883 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.486 -8.665 10.210 13.473 hybrid contribution -0.020 1.768 0.599 1.867 sum -1.506 -6.897 10.809 12.910 Atomic orbital electron populations 1.22006 0.93606 1.04044 1.02041 1.22142 0.96406 0.75832 1.05825 1.49116 1.35343 1.10648 1.20176 1.23256 0.93999 0.94154 0.96545 1.21691 1.09270 0.98405 1.01220 1.22129 0.98783 0.94226 0.97490 1.19501 0.93028 0.92163 0.87576 1.46686 1.43425 1.15402 1.31785 1.17213 0.80165 0.83212 0.81330 1.90682 1.51646 1.31944 1.71458 1.20594 1.01430 0.93256 1.00809 1.20689 1.04001 0.99367 0.95661 1.18410 1.03080 0.94621 0.99303 1.20567 0.96819 1.00054 0.92633 1.20830 0.99926 0.94900 1.01365 1.21087 1.00904 0.96121 0.95797 1.20224 0.98030 0.99005 0.96095 1.18913 0.99424 0.95510 0.92519 1.40257 1.26139 1.10637 1.17882 1.20591 1.60168 0.83367 0.94279 0.88278 1.28090 0.93858 1.04117 0.94835 1.70656 1.26347 1.33678 1.16045 0.82925 0.77300 0.70696 0.75582 1.18538 1.18541 1.20058 1.77263 1.24770 0.97550 1.14458 0.94086 0.88024 0.92173 0.90039 0.84190 0.76014 0.82037 0.88442 0.91575 0.74017 0.83486 0.84216 0.82940 0.83943 0.88253 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.10 71.98 0.73 -1.77 16 2 C 0.12 1.87 7.23 86.38 0.62 2.50 16 3 N -0.37 -9.16 3.68 -348.06 -1.28 -10.44 16 4 C 0.07 1.37 11.45 83.54 0.96 2.33 16 5 C -0.28 -7.28 10.74 21.99 0.24 -7.04 16 6 C 0.04 1.29 6.59 43.10 0.28 1.58 16 7 C 0.20 7.38 6.25 85.63 0.54 7.91 16 8 N -0.71 -31.18 5.48 -470.64 -2.58 -33.76 16 9 C 0.59 28.83 7.76 86.51 0.67 29.50 16 10 O -0.58 -28.92 16.83 -4.25 -0.07 -28.99 16 11 C -0.05 -2.40 6.76 39.91 0.27 -2.13 16 12 C -0.17 -8.16 10.55 22.63 0.24 -7.93 16 13 C -0.15 -7.01 6.16 -21.33 -0.13 -7.14 16 14 C -0.08 -3.12 10.06 22.31 0.22 -2.90 16 15 C -0.15 -5.17 9.97 22.03 0.22 -4.95 16 16 C -0.12 -4.50 10.02 22.32 0.22 -4.27 16 17 C -0.11 -5.29 8.80 22.38 0.20 -5.10 16 18 C 0.05 2.54 5.52 39.06 0.22 2.76 16 19 N -0.28 -14.90 2.52 -331.34 -0.84 -15.73 16 20 C -0.46 -23.37 7.64 84.09 0.64 -22.73 16 21 H 0.10 4.93 6.45 -2.91 -0.02 4.91 16 22 C 0.00 0.09 4.36 84.95 0.37 0.46 16 23 N -0.84 -45.59 12.17 21.67 0.26 -45.32 16 24 Si 1.12 42.94 29.97 68.60 2.06 44.99 16 25 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 26 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 27 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 28 N -0.32 -10.81 12.42 -47.39 -0.59 -11.39 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.14 0.98 8.07 -2.38 -0.02 0.96 16 34 H 0.22 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.10 3.26 8.11 -2.39 -0.02 3.24 16 37 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 38 H 0.42 19.01 4.32 -92.71 -0.40 18.61 16 39 H 0.15 6.47 8.06 -2.91 -0.02 6.45 16 40 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 41 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 42 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.10 4.88 6.99 -2.91 -0.02 4.86 16 44 H 0.27 15.71 7.36 -92.71 -0.68 15.02 16 Total: -1.00 -71.93 374.69 4.19 -67.74 By element: Atomic # 1 Polarization: 51.10 SS G_CDS: 0.72 Total: 51.83 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 6.50 Total: -18.92 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -5.02 Total: -116.65 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.07 Total: -28.99 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.06 Total: 44.99 kcal Total: -71.93 4.19 -67.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583905039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.539 kcal (2) G-P(sol) polarization free energy of solvation -71.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds