Wall clock time and date at job start Tue Mar 31 2020 20:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46736 * 2 1 4 4 N 1.46497 * 109.47254 * 119.99938 * 2 1 3 5 5 C 1.34778 * 119.99714 * 279.05081 * 4 2 1 6 6 O 1.21661 * 120.00219 * 4.81645 * 5 4 2 7 7 C 1.46887 * 119.99974 * 184.81667 * 5 4 2 8 8 C 1.36125 * 125.44215 * 186.26381 * 7 5 4 9 9 C 1.41700 * 107.74955 * 180.25674 * 8 7 5 10 10 C 1.40020 * 133.34626 * 179.80644 * 9 8 7 11 11 C 1.36579 * 119.82828 * 179.97438 * 10 9 8 12 12 C 1.38850 * 120.59990 * 359.95458 * 11 10 9 13 13 C 1.37850 * 120.63506 * 359.97438 * 12 11 10 14 14 C 1.39082 * 119.81015 * 0.02992 * 13 12 11 15 15 N 1.37844 * 133.16013 * 180.02562 * 14 13 12 16 16 C 1.36884 * 125.61958 * 359.97211 * 15 14 13 17 17 H 1.07997 * 119.99931 * 231.33184 * 16 15 14 18 18 C 1.39013 * 120.00377 * 51.33417 * 16 15 14 19 19 N 1.31344 * 120.00424 * 186.72698 * 18 16 15 20 20 Si 1.86802 * 119.99691 * 6.72111 * 18 16 15 21 21 H 1.48498 * 109.47465 * 273.86934 * 20 18 16 22 22 H 1.48501 * 109.47193 * 33.86877 * 20 18 16 23 23 H 1.48499 * 109.47053 * 153.86903 * 20 18 16 24 24 C 1.50701 * 109.47332 * 240.00238 * 2 1 3 25 25 C 1.39863 * 125.90119 * 84.12228 * 24 2 1 26 26 C 1.35320 * 107.92204 * 180.02562 * 25 24 2 27 27 N 1.34949 * 107.74501 * 359.97438 * 26 25 24 28 28 C 1.46498 * 126.03902 * 179.97438 * 27 26 25 29 29 N 1.30839 * 125.89681 * 263.81961 * 24 2 1 30 30 H 1.09010 * 109.47216 * 65.00880 * 1 2 3 31 31 H 1.09005 * 109.47180 * 185.00157 * 1 2 3 32 32 H 1.08991 * 109.47324 * 305.00598 * 1 2 3 33 33 H 0.97002 * 120.00126 * 99.04843 * 4 2 1 34 34 H 1.07997 * 126.12158 * 359.96442 * 8 7 5 35 35 H 1.08002 * 120.08660 * 359.93522 * 10 9 8 36 36 H 1.08003 * 119.69821 * 179.97438 * 11 10 9 37 37 H 1.07998 * 119.68276 * 180.02562 * 12 11 10 38 38 H 1.07997 * 120.09164 * 180.02562 * 13 12 11 39 39 H 0.97001 * 120.00389 * 174.99326 * 19 18 16 40 40 H 1.08002 * 126.04119 * 359.97438 * 25 24 2 41 41 H 1.07999 * 126.13152 * 179.97438 * 26 25 24 42 42 H 1.09008 * 109.46831 * 90.00488 * 28 27 26 43 43 H 1.08998 * 109.47294 * 210.00502 * 28 27 26 44 44 H 1.08994 * 109.47093 * 330.00733 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.0699 -0.0405 2.3757 6 8 1.6298 1.0900 2.4670 7 6 2.6573 -0.6971 3.5510 8 6 2.6585 -0.1961 4.8167 9 6 3.3258 -1.1282 5.6496 10 6 3.6289 -1.1510 7.0164 11 6 4.3007 -2.2159 7.5457 12 6 4.6864 -3.2793 6.7404 13 6 4.3981 -3.2803 5.3924 14 6 3.7150 -2.2069 4.8307 15 7 3.2921 -1.9248 3.5494 16 6 3.4771 -2.7253 2.4545 17 1 3.9082 -2.3158 1.5529 18 6 3.1099 -4.0652 2.5029 19 7 3.4068 -4.8640 1.5035 20 14 2.1945 -4.7295 3.9895 21 1 3.1713 -5.1313 5.0335 22 1 1.2977 -3.6765 4.5299 23 1 1.3869 -5.9090 3.5871 24 6 2.0324 -0.7104 -1.2305 25 6 2.1964 -0.1403 -2.4971 26 6 2.6653 -1.0998 -3.3281 27 7 2.7939 -2.2367 -2.6125 28 6 3.2704 -3.5256 -3.1204 29 7 2.3957 -1.9655 -1.2971 30 1 -0.3634 0.4342 -0.9315 31 1 -0.3634 -1.0238 0.0896 32 1 -0.3633 0.5895 0.8417 33 1 2.3046 -1.6156 1.1392 34 1 2.2319 0.7456 5.1291 35 1 3.3328 -0.3284 7.6505 36 1 4.5337 -2.2312 8.6001 37 1 5.2166 -4.1141 7.1745 38 1 4.7019 -4.1122 4.7743 39 1 3.2159 -5.8129 1.5678 40 1 1.9853 0.8845 -2.7649 41 1 2.8953 -0.9778 -4.3762 42 1 4.3528 -3.5840 -3.0046 43 1 2.8008 -4.3334 -2.5591 44 1 3.0124 -3.6182 -4.1753 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597038811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:22 Heat of formation + Delta-G solvation = 113.991280 kcal Electronic energy + Delta-G solvation = -29394.191237 eV Core-core repulsion = 25507.252066 eV Total energy + Delta-G solvation = -3886.939171 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.06368 -40.74101 -38.64505 -36.19094 -35.32823 -33.53039 -32.61450 -31.39041 -30.39665 -29.85283 -29.10905 -28.08260 -26.42920 -24.88271 -23.96351 -22.38332 -21.14012 -21.03757 -20.25386 -19.29312 -19.07715 -18.35037 -16.99611 -16.41734 -15.80908 -15.59040 -15.29780 -15.08511 -14.54920 -14.32051 -14.25338 -13.74088 -13.62377 -13.34179 -13.26748 -13.14590 -13.07767 -12.74582 -12.59213 -12.37657 -12.29124 -12.01865 -11.94056 -11.69044 -11.42614 -11.04885 -11.00187 -10.80961 -10.50339 -10.33343 -10.22225 -9.92381 -9.43249 -9.37602 -9.08948 -8.67454 -8.49953 -8.33408 -7.34455 -6.94807 -6.79269 -4.72856 1.60426 2.09517 2.47035 2.69817 2.86851 2.95620 3.03001 3.14725 3.22341 3.83552 3.90381 4.17281 4.19115 4.58073 4.61811 4.75233 4.89558 5.02295 5.30309 5.45627 5.51549 5.58130 5.61326 5.68698 5.68992 5.76356 5.87210 5.91164 6.02844 6.06983 6.18129 6.24229 6.27247 6.43244 6.48729 6.61310 6.76196 6.80131 6.82508 7.11260 7.18392 7.21952 7.26385 7.33033 7.59890 7.63360 7.79359 7.96273 8.12875 8.37343 8.65832 8.97971 9.05867 10.16552 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.004386 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.254737 B = 6382.387642 C = 7766.252022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.226 3.774 3 H 0.098 0.902 4 N -0.717 5.717 5 C 0.595 3.405 6 O -0.557 6.557 7 C -0.003 4.003 8 C -0.159 4.159 9 C -0.125 4.125 10 C -0.076 4.076 11 C -0.160 4.160 12 C -0.129 4.129 13 C -0.104 4.104 14 C 0.067 3.933 15 N -0.282 5.282 16 C -0.373 4.373 17 H 0.123 0.877 18 C 0.091 3.909 19 N -0.825 5.825 20 Si 0.867 3.133 21 H -0.240 1.240 22 H -0.255 1.255 23 H -0.284 1.284 24 C 0.058 3.942 25 C -0.265 4.265 26 C 0.045 3.955 27 N -0.372 5.372 28 C 0.103 3.897 29 N -0.254 5.254 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.429 0.571 34 H 0.139 0.861 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.285 0.715 40 H 0.146 0.854 41 H 0.171 0.829 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.987 1.983 -6.570 6.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.119 3.881 3 H 0.116 0.884 4 N -0.377 5.377 5 C 0.383 3.617 6 O -0.437 6.437 7 C -0.118 4.118 8 C -0.186 4.186 9 C -0.130 4.130 10 C -0.095 4.095 11 C -0.180 4.180 12 C -0.149 4.149 13 C -0.124 4.124 14 C -0.046 4.046 15 N 0.052 4.948 16 C -0.500 4.500 17 H 0.141 0.859 18 C -0.124 4.124 19 N -0.454 5.454 20 Si 0.692 3.308 21 H -0.165 1.165 22 H -0.179 1.179 23 H -0.210 1.210 24 C -0.109 4.109 25 C -0.295 4.295 26 C -0.101 4.101 27 N -0.154 5.154 28 C -0.038 4.038 29 N -0.076 5.076 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.277 0.723 34 H 0.157 0.843 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.095 0.905 40 H 0.164 0.836 41 H 0.188 0.812 42 H 0.093 0.907 43 H 0.112 0.888 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.099 1.075 -6.522 6.701 hybrid contribution -0.216 -0.339 -0.175 0.438 sum -1.315 0.736 -6.697 6.864 Atomic orbital electron populations 1.22140 0.94197 1.02700 1.02460 1.19133 0.93974 0.95334 0.79654 0.88429 1.46783 1.65527 1.18610 1.06796 1.17192 0.77772 0.84707 0.82012 1.90710 1.49491 1.18525 1.84973 1.20337 1.05074 0.91457 0.94888 1.20498 1.07048 1.00632 0.90432 1.18041 1.05498 0.95851 0.93653 1.20182 0.98597 0.97891 0.92834 1.20358 1.03393 0.95377 0.98840 1.20592 1.02669 0.98855 0.92825 1.20201 1.00129 0.96908 0.95117 1.18547 1.02519 0.97333 0.86247 1.40299 1.35734 1.13261 1.05479 1.19225 1.45603 0.92313 0.92834 0.85943 1.25464 0.93977 0.95799 0.97121 1.69590 1.40434 1.05336 1.30030 0.87044 0.81621 0.79832 0.82329 1.16452 1.17884 1.21045 1.22375 1.00233 0.92421 0.95910 1.21230 1.14443 1.01100 0.92694 1.22455 1.02242 0.86777 0.98642 1.48569 1.50486 1.09373 1.06967 1.21834 1.00616 0.82373 0.98970 1.77643 1.18427 1.15747 0.95825 0.91741 0.92304 0.90982 0.72296 0.84293 0.87068 0.87245 0.86973 0.86308 0.90476 0.83592 0.81202 0.90718 0.88836 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.37 37.16 0.35 -2.13 16 2 C 0.23 4.06 2.99 -69.08 -0.21 3.85 16 3 H 0.10 1.69 7.78 -51.93 -0.40 1.29 16 4 N -0.72 -15.38 4.96 -56.18 -0.28 -15.66 16 5 C 0.59 13.66 7.67 -12.76 -0.10 13.56 16 6 O -0.56 -13.02 16.21 5.22 0.08 -12.93 16 7 C 0.00 -0.08 6.77 -82.25 -0.56 -0.63 16 8 C -0.16 -3.56 10.55 -39.02 -0.41 -3.97 16 9 C -0.13 -2.78 6.16 -106.90 -0.66 -3.44 16 10 C -0.08 -1.44 10.06 -39.51 -0.40 -1.84 16 11 C -0.16 -2.82 9.97 -39.95 -0.40 -3.22 16 12 C -0.13 -2.43 10.02 -39.50 -0.40 -2.82 16 13 C -0.10 -2.28 6.75 -39.41 -0.27 -2.54 16 14 C 0.07 1.59 5.06 -83.84 -0.42 1.17 16 15 N -0.28 -7.00 2.33 -56.08 -0.13 -7.13 16 16 C -0.37 -9.55 7.75 -15.01 -0.12 -9.67 16 17 H 0.12 3.35 7.16 -52.49 -0.38 2.97 16 18 C 0.09 2.30 5.28 -17.47 -0.09 2.21 16 19 N -0.83 -20.90 13.95 55.50 0.77 -20.12 16 20 Si 0.87 20.21 24.29 -169.99 -4.13 16.08 16 21 H -0.24 -5.28 5.29 56.52 0.30 -4.98 16 22 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.06 1.01 6.20 -82.41 -0.51 0.50 16 25 C -0.26 -3.69 10.74 -40.01 -0.43 -4.12 16 26 C 0.04 0.56 11.49 -17.22 -0.20 0.36 16 27 N -0.37 -5.60 4.01 -68.16 -0.27 -5.87 16 28 C 0.10 1.17 11.47 59.85 0.69 1.85 16 29 N -0.25 -4.89 11.76 33.67 0.40 -4.49 16 30 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.19 7.75 -51.93 -0.40 0.78 16 33 H 0.43 9.97 4.17 -40.82 -0.17 9.80 16 34 H 0.14 2.81 8.06 -52.49 -0.42 2.39 16 35 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.12 2.64 6.18 -52.49 -0.32 2.31 16 39 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 40 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 43 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 365.72 15.07 5.51 5.51 Total: -1.00 -30.69 365.72 -7.74 -38.43 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -5.56 Total: 17.08 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -4.12 Total: -10.89 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.49 Total: -53.27 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.13 Total: 16.08 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.69 -7.74 -38.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597038811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.417 kcal (2) G-P(sol) polarization free energy of solvation -30.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds