Wall clock time and date at job start Tue Mar 31 2020 20:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46736 * 2 1 4 4 N 1.46497 * 109.47254 * 119.99938 * 2 1 3 5 5 C 1.34778 * 119.99714 * 279.05081 * 4 2 1 6 6 O 1.21661 * 120.00219 * 4.81645 * 5 4 2 7 7 C 1.46887 * 119.99974 * 184.81667 * 5 4 2 8 8 C 1.36125 * 125.44215 * 186.26381 * 7 5 4 9 9 C 1.41700 * 107.74955 * 180.25674 * 8 7 5 10 10 C 1.40020 * 133.34626 * 179.80644 * 9 8 7 11 11 C 1.36579 * 119.82828 * 179.97438 * 10 9 8 12 12 C 1.38850 * 120.59990 * 359.95458 * 11 10 9 13 13 C 1.37850 * 120.63506 * 359.97438 * 12 11 10 14 14 C 1.39082 * 119.81015 * 0.02992 * 13 12 11 15 15 N 1.37844 * 133.16013 * 180.02562 * 14 13 12 16 16 C 1.36884 * 125.61958 * 359.97211 * 15 14 13 17 17 H 1.07997 * 119.99931 * 231.33184 * 16 15 14 18 18 C 1.39013 * 120.00377 * 51.33417 * 16 15 14 19 19 N 1.31344 * 120.00424 * 186.72698 * 18 16 15 20 20 Si 1.86802 * 119.99691 * 6.72111 * 18 16 15 21 21 H 1.48498 * 109.47465 * 273.86934 * 20 18 16 22 22 H 1.48501 * 109.47193 * 33.86877 * 20 18 16 23 23 H 1.48499 * 109.47053 * 153.86903 * 20 18 16 24 24 C 1.50701 * 109.47332 * 240.00238 * 2 1 3 25 25 C 1.39863 * 125.90119 * 84.12228 * 24 2 1 26 26 C 1.35320 * 107.92204 * 180.02562 * 25 24 2 27 27 N 1.34949 * 107.74501 * 359.97438 * 26 25 24 28 28 C 1.46498 * 126.03902 * 179.97438 * 27 26 25 29 29 N 1.30839 * 125.89681 * 263.81961 * 24 2 1 30 30 H 1.09010 * 109.47216 * 65.00880 * 1 2 3 31 31 H 1.09005 * 109.47180 * 185.00157 * 1 2 3 32 32 H 1.08991 * 109.47324 * 305.00598 * 1 2 3 33 33 H 0.97002 * 120.00126 * 99.04843 * 4 2 1 34 34 H 1.07997 * 126.12158 * 359.96442 * 8 7 5 35 35 H 1.08002 * 120.08660 * 359.93522 * 10 9 8 36 36 H 1.08003 * 119.69821 * 179.97438 * 11 10 9 37 37 H 1.07998 * 119.68276 * 180.02562 * 12 11 10 38 38 H 1.07997 * 120.09164 * 180.02562 * 13 12 11 39 39 H 0.97001 * 120.00389 * 174.99326 * 19 18 16 40 40 H 1.08002 * 126.04119 * 359.97438 * 25 24 2 41 41 H 1.07999 * 126.13152 * 179.97438 * 26 25 24 42 42 H 1.09008 * 109.46831 * 90.00488 * 28 27 26 43 43 H 1.08998 * 109.47294 * 210.00502 * 28 27 26 44 44 H 1.08994 * 109.47093 * 330.00733 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.0699 -0.0405 2.3757 6 8 1.6298 1.0900 2.4670 7 6 2.6573 -0.6971 3.5510 8 6 2.6585 -0.1961 4.8167 9 6 3.3258 -1.1282 5.6496 10 6 3.6289 -1.1510 7.0164 11 6 4.3007 -2.2159 7.5457 12 6 4.6864 -3.2793 6.7404 13 6 4.3981 -3.2803 5.3924 14 6 3.7150 -2.2069 4.8307 15 7 3.2921 -1.9248 3.5494 16 6 3.4771 -2.7253 2.4545 17 1 3.9082 -2.3158 1.5529 18 6 3.1099 -4.0652 2.5029 19 7 3.4068 -4.8640 1.5035 20 14 2.1945 -4.7295 3.9895 21 1 3.1713 -5.1313 5.0335 22 1 1.2977 -3.6765 4.5299 23 1 1.3869 -5.9090 3.5871 24 6 2.0324 -0.7104 -1.2305 25 6 2.1964 -0.1403 -2.4971 26 6 2.6653 -1.0998 -3.3281 27 7 2.7939 -2.2367 -2.6125 28 6 3.2704 -3.5256 -3.1204 29 7 2.3957 -1.9655 -1.2971 30 1 -0.3634 0.4342 -0.9315 31 1 -0.3634 -1.0238 0.0896 32 1 -0.3633 0.5895 0.8417 33 1 2.3046 -1.6156 1.1392 34 1 2.2319 0.7456 5.1291 35 1 3.3328 -0.3284 7.6505 36 1 4.5337 -2.2312 8.6001 37 1 5.2166 -4.1141 7.1745 38 1 4.7019 -4.1122 4.7743 39 1 3.2159 -5.8129 1.5678 40 1 1.9853 0.8845 -2.7649 41 1 2.8953 -0.9778 -4.3762 42 1 4.3528 -3.5840 -3.0046 43 1 2.8008 -4.3334 -2.5591 44 1 3.0124 -3.6182 -4.1753 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597038811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:21 Heat of formation + Delta-G solvation = 94.989903 kcal Electronic energy + Delta-G solvation = -29395.015198 eV Core-core repulsion = 25507.252066 eV Total energy + Delta-G solvation = -3887.763133 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.53241 -42.13549 -40.32262 -37.79819 -36.84257 -35.35299 -33.89341 -33.13200 -31.84267 -30.98576 -30.72944 -29.70331 -27.51033 -26.73053 -25.46966 -23.81445 -22.78397 -22.23039 -21.78426 -20.87083 -20.61291 -20.06575 -18.43917 -17.77015 -17.60273 -17.05510 -16.69870 -16.45607 -16.27990 -16.02333 -15.74314 -15.32109 -15.02711 -14.92822 -14.78814 -14.56685 -14.51030 -14.24722 -13.92926 -13.75682 -13.65153 -13.34336 -13.27204 -13.20951 -12.97507 -12.68007 -12.48951 -12.34827 -12.32634 -11.91781 -11.60326 -11.52854 -11.24449 -11.12780 -10.41687 -10.34952 -10.05218 -9.47002 -9.03193 -8.78486 -8.56655 -6.66503 -0.05002 0.89110 1.00187 1.10714 1.16418 1.29052 1.33154 1.67817 1.78441 2.00689 2.24446 2.36755 2.45071 2.74856 3.12857 3.46858 3.87879 3.91483 4.01992 4.13842 4.19854 4.24742 4.28560 4.37733 4.42127 4.58770 4.63075 4.65951 4.70762 4.75464 4.78926 4.84218 4.87912 5.01208 5.07219 5.10995 5.16176 5.25095 5.41992 5.50367 5.63044 5.67463 5.75487 5.80244 5.97914 6.06344 6.23084 6.39989 6.57972 6.76185 6.80827 7.20971 7.22893 8.28091 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.004386 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.254737 B = 6382.387642 C = 7766.252022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.219 3.781 3 H 0.100 0.900 4 N -0.718 5.718 5 C 0.589 3.411 6 O -0.570 6.570 7 C -0.037 4.037 8 C -0.154 4.154 9 C -0.145 4.145 10 C -0.074 4.074 11 C -0.151 4.151 12 C -0.109 4.109 13 C -0.143 4.143 14 C 0.047 3.953 15 N -0.303 5.303 16 C -0.372 4.372 17 H 0.091 0.909 18 C 0.067 3.933 19 N -0.851 5.851 20 Si 0.910 3.090 21 H -0.216 1.216 22 H -0.285 1.285 23 H -0.279 1.279 24 C 0.042 3.958 25 C -0.277 4.277 26 C 0.064 3.936 27 N -0.379 5.379 28 C 0.098 3.902 29 N -0.321 5.321 30 H 0.097 0.903 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.422 0.578 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.107 0.893 39 H 0.290 0.710 40 H 0.173 0.827 41 H 0.224 0.776 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.552 2.254 -5.565 6.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.113 3.887 3 H 0.118 0.882 4 N -0.376 5.376 5 C 0.377 3.623 6 O -0.452 6.452 7 C -0.150 4.150 8 C -0.182 4.182 9 C -0.150 4.150 10 C -0.092 4.092 11 C -0.170 4.170 12 C -0.129 4.129 13 C -0.163 4.163 14 C -0.065 4.065 15 N 0.030 4.970 16 C -0.499 4.499 17 H 0.108 0.892 18 C -0.146 4.146 19 N -0.481 5.481 20 Si 0.734 3.266 21 H -0.139 1.139 22 H -0.211 1.211 23 H -0.206 1.206 24 C -0.124 4.124 25 C -0.307 4.307 26 C -0.082 4.082 27 N -0.162 5.162 28 C -0.042 4.042 29 N -0.145 5.145 30 H 0.116 0.884 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.267 0.733 34 H 0.175 0.825 35 H 0.164 0.836 36 H 0.175 0.825 37 H 0.166 0.834 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.191 0.809 41 H 0.240 0.760 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.654 1.338 -5.526 5.723 hybrid contribution -0.256 -0.359 -0.405 0.599 sum -0.910 0.978 -5.931 6.080 Atomic orbital electron populations 1.22044 0.92756 1.01774 1.03766 1.19389 0.95173 0.95208 0.78964 0.88186 1.46868 1.64912 1.18267 1.07558 1.17260 0.77873 0.84715 0.82454 1.90668 1.50415 1.18791 1.85288 1.20697 1.06468 0.91766 0.96041 1.20819 1.06201 1.01135 0.90031 1.18432 1.05959 0.95301 0.95278 1.20657 0.97649 0.99429 0.91479 1.20904 1.01325 0.93805 1.00972 1.21142 1.00310 0.99978 0.91423 1.20347 1.02377 0.96838 0.96727 1.19021 1.03000 0.98608 0.85911 1.40284 1.37345 1.13634 1.05772 1.18856 1.45750 0.92667 0.92625 0.89169 1.25838 0.94274 0.95815 0.98625 1.69629 1.41780 1.05772 1.30967 0.86445 0.80627 0.78407 0.81130 1.13886 1.21059 1.20552 1.22425 1.00745 0.92517 0.96760 1.21609 1.14922 1.02806 0.91334 1.23273 0.99465 0.85038 1.00396 1.48868 1.50130 1.11149 1.06009 1.22093 1.00434 0.80537 1.01173 1.77552 1.20949 1.17118 0.98852 0.88444 0.93843 0.91899 0.73309 0.82533 0.83569 0.82455 0.83361 0.87507 0.89947 0.80927 0.75968 0.90608 0.91019 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.37 71.98 0.67 -4.07 16 2 C 0.22 8.24 2.99 44.25 0.13 8.37 16 3 H 0.10 3.63 7.78 -2.39 -0.02 3.61 16 4 N -0.72 -33.04 4.96 -449.89 -2.23 -35.28 16 5 C 0.59 28.60 7.67 86.51 0.66 29.26 16 6 O -0.57 -27.71 16.21 -4.22 -0.07 -27.78 16 7 C -0.04 -1.84 6.77 39.91 0.27 -1.57 16 8 C -0.15 -7.00 10.55 22.63 0.24 -6.76 16 9 C -0.14 -6.32 6.16 -21.34 -0.13 -6.45 16 10 C -0.07 -2.51 10.06 22.31 0.22 -2.29 16 11 C -0.15 -4.57 9.97 22.03 0.22 -4.35 16 12 C -0.11 -3.68 10.02 22.32 0.22 -3.46 16 13 C -0.14 -6.15 6.75 22.38 0.15 -6.00 16 14 C 0.05 2.26 5.06 39.06 0.20 2.46 16 15 N -0.30 -15.75 2.33 -331.35 -0.77 -16.52 16 16 C -0.37 -20.32 7.75 84.09 0.65 -19.67 16 17 H 0.09 5.40 7.16 -2.91 -0.02 5.38 16 18 C 0.07 3.53 5.28 84.95 0.45 3.98 16 19 N -0.85 -45.29 13.95 21.67 0.30 -44.99 16 20 Si 0.91 42.89 24.29 68.60 1.67 44.56 16 21 H -0.22 -9.22 5.29 99.48 0.53 -8.70 16 22 H -0.28 -14.75 7.11 99.48 0.71 -14.04 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 24 C 0.04 1.50 6.20 43.10 0.27 1.77 16 25 C -0.28 -7.42 10.74 21.99 0.24 -7.18 16 26 C 0.06 1.46 11.49 83.54 0.96 2.42 16 27 N -0.38 -11.36 4.01 -369.57 -1.48 -12.84 16 28 C 0.10 2.17 11.47 127.77 1.47 3.63 16 29 N -0.32 -12.97 11.76 -47.39 -0.56 -13.53 16 30 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 31 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.06 2.15 7.75 -2.39 -0.02 2.13 16 33 H 0.42 21.25 4.17 -92.71 -0.39 20.87 16 34 H 0.16 6.31 8.06 -2.91 -0.02 6.29 16 35 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 36 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 37 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 38 H 0.11 4.76 6.18 -2.91 -0.02 4.75 16 39 H 0.29 14.23 8.31 -92.71 -0.77 13.46 16 40 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 41 H 0.22 2.46 8.06 -2.91 -0.02 2.43 16 42 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 43 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -72.71 365.72 4.22 -68.50 By element: Atomic # 1 Polarization: 47.31 SS G_CDS: 0.47 Total: 47.78 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 6.89 Total: -9.90 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -4.74 Total: -123.16 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.07 Total: -27.78 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.67 Total: 44.56 kcal Total: -72.71 4.22 -68.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597038811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.486 kcal (2) G-P(sol) polarization free energy of solvation -72.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds