Wall clock time and date at job start Tue Mar 31 2020 20:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47194 * 2 1 4 4 N 1.46503 * 109.46919 * 240.00250 * 2 1 3 5 5 C 1.34775 * 119.99983 * 86.90132 * 4 2 1 6 6 O 1.21663 * 120.00081 * 4.51836 * 5 4 2 7 7 C 1.46888 * 119.99861 * 184.52174 * 5 4 2 8 8 C 1.36126 * 125.43746 * 186.30606 * 7 5 4 9 9 C 1.41707 * 107.75028 * 180.27735 * 8 7 5 10 10 C 1.40011 * 133.35085 * 179.78047 * 9 8 7 11 11 C 1.36581 * 119.82984 * 179.97438 * 10 9 8 12 12 C 1.38860 * 120.59876 * 359.94794 * 11 10 9 13 13 C 1.37839 * 120.63389 * 0.03081 * 12 11 10 14 14 C 1.39086 * 119.81438 * 359.97438 * 13 12 11 15 15 N 1.37838 * 133.16439 * 180.02562 * 14 13 12 16 16 C 1.36893 * 125.61839 * 359.97438 * 15 14 13 17 17 H 1.08000 * 119.99737 * 226.60103 * 16 15 14 18 18 C 1.39010 * 120.00058 * 46.60681 * 16 15 14 19 19 N 1.31345 * 120.00001 * 196.58826 * 18 16 15 20 20 Si 1.86805 * 120.00145 * 16.58103 * 18 16 15 21 21 H 1.48507 * 109.46891 * 264.57134 * 20 18 16 22 22 H 1.48500 * 109.46852 * 24.56567 * 20 18 16 23 23 H 1.48492 * 109.47266 * 144.56967 * 20 18 16 24 24 C 1.50703 * 109.47086 * 120.00484 * 2 1 3 25 25 C 1.35313 * 126.12528 * 120.91153 * 24 2 1 26 26 C 1.39874 * 107.91528 * 179.97438 * 25 24 2 27 27 N 1.30837 * 108.20249 * 359.97438 * 26 25 24 28 28 N 1.34942 * 126.12281 * 300.59128 * 24 2 1 29 29 C 1.46501 * 126.04199 * 0.04227 * 28 24 2 30 30 H 1.08998 * 109.47418 * 185.92835 * 1 2 3 31 31 H 1.09003 * 109.46763 * 305.93228 * 1 2 3 32 32 H 1.09007 * 109.46875 * 65.92289 * 1 2 3 33 33 H 0.97001 * 119.99662 * 266.89418 * 4 2 1 34 34 H 1.07999 * 126.12585 * 0.02562 * 8 7 5 35 35 H 1.07999 * 120.08615 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.70362 * 179.97438 * 11 10 9 37 37 H 1.08003 * 119.67845 * 180.02562 * 12 11 10 38 38 H 1.07997 * 120.09439 * 179.97438 * 13 12 11 39 39 H 0.96998 * 120.00207 * 174.98841 * 19 18 16 40 40 H 1.07993 * 126.04705 * 359.93596 * 25 24 2 41 41 H 1.07997 * 125.89731 * 179.97438 * 26 25 24 42 42 H 1.09001 * 109.47267 * 89.99129 * 29 28 24 43 43 H 1.08999 * 109.47465 * 210.00133 * 29 28 24 44 44 H 1.09003 * 109.46841 * 329.99850 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1834 -0.0094 -2.3474 6 8 2.0061 1.1940 -2.3729 7 6 2.5773 -0.7199 -3.5712 8 6 2.8916 -0.1326 -4.7583 9 6 3.2075 -1.1621 -5.6794 10 6 3.5922 -1.1626 -7.0256 11 6 3.8354 -2.3462 -7.6623 12 6 3.7057 -3.5521 -6.9862 13 6 3.3287 -3.5772 -5.6606 14 6 3.0756 -2.3847 -4.9910 15 7 2.6923 -2.0912 -3.6999 16 6 2.4576 -3.0073 -2.7102 17 1 1.5714 -2.9261 -2.0983 18 6 3.3600 -4.0421 -2.4927 19 7 2.9993 -5.0910 -1.7891 20 14 5.0855 -3.9412 -3.2013 21 1 5.1304 -4.6614 -4.4993 22 1 5.4514 -2.5175 -3.4123 23 1 6.0461 -4.5644 -2.2559 24 6 2.0323 -0.7105 1.2304 25 6 2.8275 -1.8051 1.2507 26 6 3.0592 -2.1439 2.5879 27 7 2.4262 -1.2832 3.3432 28 7 1.7745 -0.3655 2.5093 29 6 0.9550 0.7669 2.9481 30 1 -0.3634 -1.0221 0.1061 31 1 -0.3633 0.6031 0.8322 32 1 -0.3633 0.4193 -0.9383 33 1 2.2228 -1.6381 -1.1597 34 1 2.8951 0.9279 -4.9629 35 1 3.6964 -0.2294 -7.5592 36 1 4.1316 -2.3442 -8.7009 37 1 3.9021 -4.4794 -7.5041 38 1 3.2301 -4.5201 -5.1433 39 1 3.6028 -5.8449 -1.6981 40 1 3.2145 -2.3256 0.3873 41 1 3.6573 -2.9727 2.9367 42 1 -0.0819 0.4468 3.0509 43 1 1.3205 1.1291 3.9090 44 1 1.0168 1.5673 2.2108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001624657521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:30 Heat of formation + Delta-G solvation = 97.068187 kcal Electronic energy + Delta-G solvation = -29495.738121 eV Core-core repulsion = 25608.065109 eV Total energy + Delta-G solvation = -3887.673011 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.60576 -42.29360 -40.35068 -37.78191 -36.83158 -35.38542 -34.39104 -33.12869 -32.28679 -30.78409 -30.25849 -29.67353 -27.67983 -26.73876 -25.59420 -23.91953 -22.81166 -22.38542 -21.72403 -21.01530 -20.70586 -20.12884 -18.61603 -17.67376 -17.61822 -17.01018 -16.70902 -16.49838 -16.35547 -15.93810 -15.70663 -15.41957 -15.26126 -14.97264 -14.76816 -14.67037 -14.46193 -14.33746 -14.03579 -13.90375 -13.65473 -13.51485 -13.32551 -13.20219 -12.89139 -12.74425 -12.47022 -12.41282 -12.26909 -11.96123 -11.83756 -11.54671 -11.30007 -11.20406 -10.49580 -10.41740 -10.11886 -9.57729 -9.03910 -8.82091 -8.60178 -6.61413 -0.04367 0.73816 0.90289 1.11285 1.19848 1.31809 1.35720 1.43830 1.76145 2.01273 2.19051 2.30769 2.43272 2.78340 3.15012 3.25847 3.62446 3.84667 3.95076 4.03964 4.07171 4.30331 4.31246 4.38260 4.38731 4.49468 4.53904 4.59772 4.62853 4.67260 4.72563 4.78232 4.81676 5.01890 5.05554 5.08808 5.13269 5.27069 5.38196 5.40629 5.60888 5.68734 5.73206 5.81834 5.94868 5.99736 6.05568 6.39686 6.47177 6.61131 6.76812 7.13825 7.22569 8.22840 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015015 B = 0.004246 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.389173 B = 6593.480033 C = 7960.576151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.206 3.794 3 H 0.105 0.895 4 N -0.715 5.715 5 C 0.598 3.402 6 O -0.569 6.569 7 C -0.038 4.038 8 C -0.155 4.155 9 C -0.145 4.145 10 C -0.074 4.074 11 C -0.153 4.153 12 C -0.110 4.110 13 C -0.142 4.142 14 C 0.048 3.952 15 N -0.295 5.295 16 C -0.381 4.381 17 H 0.104 0.896 18 C 0.072 3.928 19 N -0.846 5.846 20 Si 0.909 3.091 21 H -0.233 1.233 22 H -0.281 1.281 23 H -0.274 1.274 24 C 0.078 3.922 25 C -0.283 4.283 26 C 0.047 3.953 27 N -0.312 5.312 28 N -0.364 5.364 29 C 0.084 3.916 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.420 0.580 34 H 0.156 0.844 35 H 0.145 0.855 36 H 0.155 0.845 37 H 0.146 0.854 38 H 0.105 0.895 39 H 0.295 0.705 40 H 0.131 0.869 41 H 0.205 0.795 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.988 5.836 1.178 6.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.099 3.901 3 H 0.122 0.878 4 N -0.374 5.374 5 C 0.387 3.613 6 O -0.450 6.450 7 C -0.151 4.151 8 C -0.183 4.183 9 C -0.150 4.150 10 C -0.093 4.093 11 C -0.171 4.171 12 C -0.130 4.130 13 C -0.162 4.162 14 C -0.065 4.065 15 N 0.038 4.962 16 C -0.508 4.508 17 H 0.121 0.879 18 C -0.141 4.141 19 N -0.475 5.475 20 Si 0.732 3.268 21 H -0.157 1.157 22 H -0.206 1.206 23 H -0.200 1.200 24 C -0.052 4.052 25 C -0.313 4.313 26 C -0.138 4.138 27 N -0.134 5.134 28 N -0.147 5.147 29 C -0.056 4.056 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.266 0.734 34 H 0.173 0.827 35 H 0.163 0.837 36 H 0.173 0.827 37 H 0.164 0.836 38 H 0.123 0.877 39 H 0.106 0.894 40 H 0.149 0.851 41 H 0.221 0.779 42 H 0.112 0.888 43 H 0.122 0.878 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.532 6.691 2.993 7.488 hybrid contribution 0.951 -1.234 -0.638 1.683 sum -0.581 5.457 2.355 5.972 Atomic orbital electron populations 1.22207 0.92151 1.02993 1.03963 1.19311 0.95363 0.95833 0.79554 0.87758 1.46697 1.66390 1.15522 1.08770 1.17142 0.75878 0.85840 0.82477 1.90690 1.54250 1.13981 1.86035 1.20528 1.14051 0.83845 0.96700 1.20791 1.07432 0.98901 0.91159 1.18408 1.08908 0.91837 0.95867 1.20645 0.97760 0.99664 0.91183 1.20887 1.03868 0.91262 1.01127 1.21129 0.99767 0.99743 0.92396 1.20311 1.04986 0.94862 0.96055 1.18920 1.06285 0.96246 0.85066 1.40261 1.45989 1.03337 1.06632 1.19000 1.09344 1.07806 1.14603 0.87907 1.25746 1.00498 0.93856 0.94041 1.69639 1.38395 1.04488 1.35020 0.86328 0.80393 0.79674 0.80375 1.15656 1.20591 1.20001 1.20946 0.99392 0.97440 0.87392 1.21360 1.09337 1.01992 0.98570 1.24141 0.99105 0.99235 0.91273 1.77262 1.14453 1.03701 1.18030 1.48622 1.39836 1.24183 1.02096 1.22358 0.94679 0.84933 1.03600 0.92667 0.88168 0.91815 0.73410 0.82680 0.83699 0.82689 0.83620 0.87676 0.89429 0.85132 0.77854 0.88774 0.87834 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 9.29 71.98 0.67 -3.45 16 2 C 0.21 6.56 2.63 44.24 0.12 6.67 16 3 H 0.10 3.25 7.46 -2.38 -0.02 3.23 16 4 N -0.71 -28.20 4.71 -449.88 -2.12 -30.32 16 5 C 0.60 25.96 7.75 86.51 0.67 26.64 16 6 O -0.57 -25.18 16.45 -4.23 -0.07 -25.25 16 7 C -0.04 -1.75 6.77 39.91 0.27 -1.48 16 8 C -0.16 -6.58 10.55 22.63 0.24 -6.34 16 9 C -0.15 -6.02 6.16 -21.33 -0.13 -6.15 16 10 C -0.07 -2.42 10.06 22.31 0.22 -2.20 16 11 C -0.15 -4.47 9.97 22.03 0.22 -4.25 16 12 C -0.11 -3.64 10.02 22.32 0.22 -3.42 16 13 C -0.14 -5.89 6.98 22.38 0.16 -5.74 16 14 C 0.05 2.18 5.13 39.06 0.20 2.38 16 15 N -0.30 -14.18 2.35 -331.33 -0.78 -14.96 16 16 C -0.38 -18.89 7.93 84.09 0.67 -18.22 16 17 H 0.10 5.36 6.87 -2.91 -0.02 5.34 16 18 C 0.07 3.52 5.00 84.95 0.42 3.94 16 19 N -0.85 -41.81 13.95 21.67 0.30 -41.51 16 20 Si 0.91 40.37 24.39 68.60 1.67 42.04 16 21 H -0.23 -9.67 5.86 99.48 0.58 -9.09 16 22 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 C 0.08 2.49 6.22 41.41 0.26 2.74 16 25 C -0.28 -10.09 9.90 21.99 0.22 -9.88 16 26 C 0.05 1.49 12.03 85.24 1.03 2.51 16 27 N -0.31 -9.75 12.58 -57.02 -0.72 -10.47 16 28 N -0.36 -10.12 4.01 -356.03 -1.43 -11.55 16 29 C 0.08 1.42 9.88 127.77 1.26 2.68 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 1.88 6.17 -2.39 -0.01 1.87 16 32 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.42 17.89 3.16 -92.71 -0.29 17.60 16 34 H 0.16 5.85 8.06 -2.91 -0.02 5.83 16 35 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 36 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 37 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 38 H 0.11 4.55 6.20 -2.91 -0.02 4.53 16 39 H 0.29 13.45 8.31 -92.71 -0.77 12.68 16 40 H 0.13 5.25 6.96 -2.91 -0.02 5.23 16 41 H 0.20 5.18 8.06 -2.91 -0.02 5.16 16 42 H 0.09 1.26 7.94 -2.39 -0.02 1.25 16 43 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.11 1.41 7.41 -2.39 -0.02 1.39 16 Total: -1.00 -63.32 359.95 4.21 -59.11 By element: Atomic # 1 Polarization: 45.82 SS G_CDS: 0.63 Total: 46.46 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 6.71 Total: -13.56 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -4.74 Total: -108.80 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.07 Total: -25.25 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 1.67 Total: 42.04 kcal Total: -63.32 4.21 -59.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624657521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.181 kcal (2) G-P(sol) polarization free energy of solvation -63.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds