Wall clock time and date at job start Tue Mar 31 2020 21:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.46836 * 2 1 4 4 C 1.36887 * 126.39714 * 265.18202 * 3 2 1 5 5 C 1.34668 * 106.81257 * 180.25546 * 4 3 2 6 6 N 1.34119 * 108.02576 * 359.74552 * 5 4 3 7 7 C 1.30501 * 109.25556 * 359.97438 * 6 5 4 8 8 C 1.50701 * 125.64948 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46814 * 90.02906 * 8 7 6 10 10 C 1.34778 * 119.99928 * 184.05726 * 9 8 7 11 11 O 1.21673 * 120.00019 * 4.53129 * 10 9 8 12 12 C 1.46881 * 120.00350 * 184.52738 * 10 9 8 13 13 C 1.36120 * 125.44263 * 186.50071 * 12 10 9 14 14 C 1.41701 * 107.75468 * 180.24384 * 13 12 10 15 15 C 1.40015 * 133.35295 * 179.81912 * 14 13 12 16 16 C 1.36580 * 119.82912 * 179.97438 * 15 14 13 17 17 C 1.38859 * 120.60204 * 359.97438 * 16 15 14 18 18 C 1.37846 * 120.63089 * 359.97438 * 17 16 15 19 19 C 1.39082 * 119.81439 * 0.02562 * 18 17 16 20 20 N 1.37838 * 133.16404 * 180.02562 * 19 18 17 21 21 C 1.36894 * 125.61671 * 359.93708 * 20 19 18 22 22 H 1.07999 * 119.99630 * 227.29343 * 21 20 19 23 23 C 1.39007 * 120.00079 * 47.29897 * 21 20 19 24 24 N 1.31351 * 119.99658 * 197.31115 * 23 21 20 25 25 Si 1.86796 * 120.00176 * 17.03303 * 23 21 20 26 26 H 1.48493 * 109.47320 * 264.92410 * 25 23 21 27 27 H 1.48505 * 109.47063 * 24.92484 * 25 23 21 28 28 H 1.48497 * 109.47338 * 144.92068 * 25 23 21 29 29 H 1.08996 * 109.46961 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46838 * 300.00079 * 1 2 3 31 31 H 1.09007 * 109.46868 * 60.00214 * 1 2 3 32 32 H 1.09007 * 109.47117 * 240.00142 * 2 1 3 33 33 H 1.08998 * 109.47048 * 119.99923 * 2 1 3 34 34 H 1.07997 * 126.59082 * 359.97438 * 4 3 2 35 35 H 1.08008 * 125.98636 * 179.72383 * 5 4 3 36 36 H 1.08995 * 109.47249 * 330.02541 * 8 7 6 37 37 H 1.09000 * 109.46757 * 210.03035 * 8 7 6 38 38 H 0.96994 * 120.00517 * 4.06082 * 9 8 7 39 39 H 1.08002 * 126.12022 * 0.02562 * 13 12 10 40 40 H 1.07999 * 120.08812 * 359.94137 * 15 14 13 41 41 H 1.08003 * 119.70281 * 180.02562 * 16 15 14 42 42 H 1.07995 * 119.68175 * 179.97438 * 17 16 15 43 43 H 1.07995 * 120.09065 * 180.02562 * 18 17 16 44 44 H 0.97003 * 119.99508 * 179.72336 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3763 2.1162 -1.0979 5 6 2.7688 3.3231 -0.6477 6 7 2.6484 3.3270 0.6881 7 6 2.1956 2.1685 1.0828 8 6 1.9233 1.7721 2.5110 9 7 0.5399 2.1091 2.8560 10 6 0.0937 1.9192 4.1135 11 8 0.8605 1.5463 4.9814 12 6 -1.3184 2.1626 4.4363 13 6 -1.8600 2.1282 5.6846 14 6 -3.2434 2.4104 5.5634 15 6 -4.2894 2.5068 6.4891 16 6 -5.5519 2.8015 6.0593 17 6 -5.8094 3.0077 4.7105 18 6 -4.7957 2.9192 3.7805 19 6 -3.5019 2.6202 4.1941 20 7 -2.3086 2.4674 3.5214 21 6 -2.1343 2.5901 2.1692 22 1 -1.5773 1.8408 1.6263 23 6 -2.6740 3.6793 1.4948 24 7 -2.8113 3.6409 0.1890 25 14 -3.2111 5.1943 2.4463 26 1 -4.6647 5.1068 2.7369 27 1 -2.4550 5.2715 3.7220 28 1 -2.9406 6.4092 1.6364 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 2.3531 1.7892 -2.1270 35 1 3.1195 4.1440 -1.2557 36 1 2.6037 2.3079 3.1728 37 1 2.0752 0.6988 2.6254 38 1 -0.0548 2.4687 2.1795 39 1 -1.3308 1.9195 6.6027 40 1 -4.0986 2.3479 7.5402 41 1 -6.3572 2.8758 6.7752 42 1 -6.8133 3.2395 4.3870 43 1 -5.0057 3.0816 2.7336 44 1 -3.1917 4.3993 -0.2811 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001628619036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:06 Heat of formation + Delta-G solvation = 92.855709 kcal Electronic energy + Delta-G solvation = -29656.728125 eV Core-core repulsion = 25768.872447 eV Total energy + Delta-G solvation = -3887.855678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01254 -40.83867 -38.63769 -36.22821 -34.97553 -34.50781 -33.55172 -31.44920 -30.37738 -29.94841 -29.20031 -28.34146 -26.06207 -24.98916 -23.68258 -22.88856 -21.26573 -21.19996 -20.34182 -19.76342 -19.21376 -18.49634 -17.17977 -16.58825 -15.93580 -15.83053 -15.21498 -15.14294 -14.78315 -14.62968 -14.26822 -14.07051 -13.97813 -13.58054 -13.47197 -13.35137 -13.11578 -12.84455 -12.57464 -12.45586 -12.37529 -12.24860 -12.09608 -11.92883 -11.48643 -11.30136 -11.04424 -11.00564 -10.53502 -10.31348 -9.98439 -9.80864 -9.65127 -9.51948 -9.47799 -8.80166 -8.63950 -8.29372 -7.42453 -7.06508 -6.98245 -4.81355 1.53989 2.06045 2.42266 2.79420 2.84201 2.97681 3.08782 3.17794 3.18556 3.81928 3.91378 4.03838 4.10796 4.44392 4.55768 4.60208 4.70377 4.84325 4.98836 5.11522 5.35454 5.47448 5.52111 5.57118 5.65270 5.68280 5.77019 5.80760 5.87068 5.94942 6.13245 6.18753 6.27941 6.36761 6.41079 6.54811 6.71005 6.77721 6.85207 6.88923 7.09959 7.18233 7.25169 7.28616 7.47809 7.57735 7.64783 8.01447 8.12885 8.24264 8.51770 8.79307 8.94584 9.98161 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013939 B = 0.004431 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.340799 B = 6317.307509 C = 7205.113449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.099 3.901 3 N -0.444 5.444 4 C -0.049 4.049 5 C -0.030 4.030 6 N -0.473 5.473 7 C 0.192 3.808 8 C 0.207 3.793 9 N -0.722 5.722 10 C 0.598 3.402 11 O -0.554 6.554 12 C -0.010 4.010 13 C -0.156 4.156 14 C -0.126 4.126 15 C -0.075 4.075 16 C -0.160 4.160 17 C -0.128 4.128 18 C -0.104 4.104 19 C 0.069 3.931 20 N -0.278 5.278 21 C -0.379 4.379 22 H 0.121 0.879 23 C 0.091 3.909 24 N -0.820 5.820 25 Si 0.871 3.129 26 H -0.248 1.248 27 H -0.252 1.252 28 H -0.280 1.280 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.423 0.577 39 H 0.139 0.861 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.200 -4.792 -2.404 6.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.023 4.023 3 N -0.127 5.127 4 C -0.183 4.183 5 C -0.179 4.179 6 N -0.192 5.192 7 C -0.070 4.070 8 C 0.081 3.919 9 N -0.384 5.384 10 C 0.387 3.613 11 O -0.433 6.433 12 C -0.124 4.124 13 C -0.183 4.183 14 C -0.131 4.131 15 C -0.094 4.094 16 C -0.180 4.180 17 C -0.148 4.148 18 C -0.123 4.123 19 C -0.045 4.045 20 N 0.056 4.944 21 C -0.505 4.505 22 H 0.138 0.862 23 C -0.125 4.125 24 N -0.448 5.448 25 Si 0.694 3.306 26 H -0.172 1.172 27 H -0.176 1.176 28 H -0.206 1.206 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.190 0.810 35 H 0.186 0.814 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.269 0.731 39 H 0.157 0.843 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.961 -4.453 -1.961 6.274 hybrid contribution -0.791 0.328 -1.020 1.331 sum 3.170 -4.126 -2.981 5.996 Atomic orbital electron populations 1.22228 0.92906 1.03200 1.04742 1.21926 0.96586 0.79660 1.04139 1.45479 1.47725 1.12719 1.06765 1.22685 1.08753 0.94225 0.92591 1.22267 1.07088 0.97305 0.91233 1.70231 1.17879 1.18883 1.12235 1.23017 1.05211 0.88004 0.90761 1.19350 0.85689 1.00188 0.86625 1.46744 1.12471 1.66076 1.13065 1.17171 0.85911 0.76502 0.81761 1.90739 1.56389 1.48571 1.47561 1.20197 0.88481 1.13761 0.89967 1.20487 0.92660 1.09625 0.95531 1.18023 0.93939 1.08482 0.92687 1.20186 0.91749 0.99712 0.97742 1.20368 0.96357 1.05809 0.95418 1.20610 0.97726 1.03457 0.92997 1.20162 0.90227 1.02293 0.99656 1.18484 0.87806 1.06539 0.91669 1.40252 1.03049 1.45736 1.05324 1.19175 1.41257 1.10945 0.79102 0.86185 1.25462 0.93256 0.98315 0.95467 1.69657 1.35529 1.31785 1.07792 0.86848 0.81552 0.81047 0.81128 1.17250 1.17563 1.20564 0.90749 0.90690 0.91307 0.89092 0.89137 0.80971 0.81408 0.88545 0.90652 0.73064 0.84281 0.87039 0.87215 0.86950 0.86463 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.10 1.09 6.61 -4.04 -0.03 1.07 16 3 N -0.44 -6.25 2.75 -113.90 -0.31 -6.56 16 4 C -0.05 -0.65 11.58 -16.56 -0.19 -0.84 16 5 C -0.03 -0.45 11.87 -17.82 -0.21 -0.67 16 6 N -0.47 -8.60 11.25 -10.82 -0.12 -8.72 16 7 C 0.19 3.21 7.27 -155.42 -1.13 2.08 16 8 C 0.21 3.47 6.00 -5.19 -0.03 3.44 16 9 N -0.72 -14.25 5.11 -62.74 -0.32 -14.57 16 10 C 0.60 12.96 7.76 -12.76 -0.10 12.86 16 11 O -0.55 -12.50 16.84 5.21 0.09 -12.41 16 12 C -0.01 -0.22 6.77 -82.25 -0.56 -0.78 16 13 C -0.16 -3.36 10.55 -39.02 -0.41 -3.77 16 14 C -0.13 -2.71 6.16 -106.89 -0.66 -3.37 16 15 C -0.08 -1.37 10.06 -39.51 -0.40 -1.77 16 16 C -0.16 -2.74 9.97 -39.95 -0.40 -3.14 16 17 C -0.13 -2.34 10.02 -39.49 -0.40 -2.74 16 18 C -0.10 -2.21 7.05 -39.41 -0.28 -2.49 16 19 C 0.07 1.58 5.14 -83.83 -0.43 1.15 16 20 N -0.28 -6.56 2.33 -56.08 -0.13 -6.69 16 21 C -0.38 -9.11 7.88 -15.01 -0.12 -9.23 16 22 H 0.12 2.91 5.20 -52.49 -0.27 2.64 16 23 C 0.09 2.21 4.98 -17.47 -0.09 2.13 16 24 N -0.82 -20.15 13.95 55.50 0.77 -19.38 16 25 Si 0.87 20.00 24.52 -169.99 -4.17 15.83 16 26 H -0.25 -5.43 5.92 56.52 0.33 -5.10 16 27 H -0.25 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.23 6.03 -51.93 -0.31 0.92 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.90 7.21 -51.93 -0.37 0.52 16 34 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.17 2.08 8.06 -52.48 -0.42 1.66 16 36 H 0.10 1.64 8.12 -51.93 -0.42 1.22 16 37 H 0.08 1.10 7.16 -51.93 -0.37 0.73 16 38 H 0.42 9.02 4.49 -40.82 -0.18 8.83 16 39 H 0.14 2.72 8.06 -52.49 -0.42 2.29 16 40 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 42 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 43 H 0.12 2.56 6.33 -52.49 -0.33 2.22 16 44 H 0.29 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 362.40 15.07 5.46 5.46 Total: -1.00 -29.29 362.40 -9.05 -38.34 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -5.28 Total: 16.66 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -5.04 Total: -7.95 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.11 Total: -55.93 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.17 Total: 15.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.29 -9.05 -38.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628619036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.200 kcal (2) G-P(sol) polarization free energy of solvation -29.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds