Wall clock time and date at job start Tue Mar 31 2020 21:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.46836 * 2 1 4 4 C 1.36887 * 126.39714 * 265.18202 * 3 2 1 5 5 C 1.34668 * 106.81257 * 180.25546 * 4 3 2 6 6 N 1.34119 * 108.02576 * 359.74552 * 5 4 3 7 7 C 1.30501 * 109.25556 * 359.97438 * 6 5 4 8 8 C 1.50701 * 125.64948 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46814 * 90.02906 * 8 7 6 10 10 C 1.34778 * 119.99928 * 184.05726 * 9 8 7 11 11 O 1.21673 * 120.00019 * 4.53129 * 10 9 8 12 12 C 1.46881 * 120.00350 * 184.52738 * 10 9 8 13 13 C 1.36120 * 125.44263 * 186.50071 * 12 10 9 14 14 C 1.41701 * 107.75468 * 180.24384 * 13 12 10 15 15 C 1.40015 * 133.35295 * 179.81912 * 14 13 12 16 16 C 1.36580 * 119.82912 * 179.97438 * 15 14 13 17 17 C 1.38859 * 120.60204 * 359.97438 * 16 15 14 18 18 C 1.37846 * 120.63089 * 359.97438 * 17 16 15 19 19 C 1.39082 * 119.81439 * 0.02562 * 18 17 16 20 20 N 1.37838 * 133.16404 * 180.02562 * 19 18 17 21 21 C 1.36894 * 125.61671 * 359.93708 * 20 19 18 22 22 H 1.07999 * 119.99630 * 227.29343 * 21 20 19 23 23 C 1.39007 * 120.00079 * 47.29897 * 21 20 19 24 24 N 1.31351 * 119.99658 * 197.31115 * 23 21 20 25 25 Si 1.86796 * 120.00176 * 17.03303 * 23 21 20 26 26 H 1.48493 * 109.47320 * 264.92410 * 25 23 21 27 27 H 1.48505 * 109.47063 * 24.92484 * 25 23 21 28 28 H 1.48497 * 109.47338 * 144.92068 * 25 23 21 29 29 H 1.08996 * 109.46961 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46838 * 300.00079 * 1 2 3 31 31 H 1.09007 * 109.46868 * 60.00214 * 1 2 3 32 32 H 1.09007 * 109.47117 * 240.00142 * 2 1 3 33 33 H 1.08998 * 109.47048 * 119.99923 * 2 1 3 34 34 H 1.07997 * 126.59082 * 359.97438 * 4 3 2 35 35 H 1.08008 * 125.98636 * 179.72383 * 5 4 3 36 36 H 1.08995 * 109.47249 * 330.02541 * 8 7 6 37 37 H 1.09000 * 109.46757 * 210.03035 * 8 7 6 38 38 H 0.96994 * 120.00517 * 4.06082 * 9 8 7 39 39 H 1.08002 * 126.12022 * 0.02562 * 13 12 10 40 40 H 1.07999 * 120.08812 * 359.94137 * 15 14 13 41 41 H 1.08003 * 119.70281 * 180.02562 * 16 15 14 42 42 H 1.07995 * 119.68175 * 179.97438 * 17 16 15 43 43 H 1.07995 * 120.09065 * 180.02562 * 18 17 16 44 44 H 0.97003 * 119.99508 * 179.72336 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3763 2.1162 -1.0979 5 6 2.7688 3.3231 -0.6477 6 7 2.6484 3.3270 0.6881 7 6 2.1956 2.1685 1.0828 8 6 1.9233 1.7721 2.5110 9 7 0.5399 2.1091 2.8560 10 6 0.0937 1.9192 4.1135 11 8 0.8605 1.5463 4.9814 12 6 -1.3184 2.1626 4.4363 13 6 -1.8600 2.1282 5.6846 14 6 -3.2434 2.4104 5.5634 15 6 -4.2894 2.5068 6.4891 16 6 -5.5519 2.8015 6.0593 17 6 -5.8094 3.0077 4.7105 18 6 -4.7957 2.9192 3.7805 19 6 -3.5019 2.6202 4.1941 20 7 -2.3086 2.4674 3.5214 21 6 -2.1343 2.5901 2.1692 22 1 -1.5773 1.8408 1.6263 23 6 -2.6740 3.6793 1.4948 24 7 -2.8113 3.6409 0.1890 25 14 -3.2111 5.1943 2.4463 26 1 -4.6647 5.1068 2.7369 27 1 -2.4550 5.2715 3.7220 28 1 -2.9406 6.4092 1.6364 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 2.3531 1.7892 -2.1270 35 1 3.1195 4.1440 -1.2557 36 1 2.6037 2.3079 3.1728 37 1 2.0752 0.6988 2.6254 38 1 -0.0548 2.4687 2.1795 39 1 -1.3308 1.9195 6.6027 40 1 -4.0986 2.3479 7.5402 41 1 -6.3572 2.8758 6.7752 42 1 -6.8133 3.2395 4.3870 43 1 -5.0057 3.0816 2.7336 44 1 -3.1917 4.3993 -0.2811 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001628619036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:05 Heat of formation + Delta-G solvation = 76.451034 kcal Electronic energy + Delta-G solvation = -29657.439485 eV Core-core repulsion = 25768.872447 eV Total energy + Delta-G solvation = -3888.567038 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.16777 -42.47567 -40.27345 -37.78861 -36.26514 -35.84868 -35.30369 -33.12966 -31.72464 -31.10082 -30.70752 -29.86268 -27.41097 -26.73793 -24.75008 -24.39601 -22.81735 -22.38304 -21.90760 -21.21177 -20.67144 -20.16805 -18.51970 -17.98140 -17.65541 -17.22765 -16.71656 -16.57198 -16.24352 -16.04486 -15.74017 -15.51078 -15.44494 -14.97350 -14.88600 -14.73353 -14.59089 -14.46731 -13.97104 -13.79133 -13.75348 -13.67662 -13.56261 -13.25115 -12.97785 -12.79184 -12.49025 -12.34685 -12.27389 -11.95245 -11.55456 -11.34491 -11.29979 -11.01206 -10.65237 -10.47031 -10.21216 -9.44650 -9.05044 -8.89283 -8.62427 -6.64676 -0.05551 0.88277 0.88853 1.07693 1.15149 1.28627 1.30680 1.79496 1.92583 1.97885 2.28868 2.36673 2.51080 2.76767 3.13559 3.24471 3.71905 3.75691 3.88867 4.02012 4.02449 4.22301 4.28666 4.30131 4.36865 4.39831 4.49662 4.58157 4.65498 4.66577 4.73278 4.79091 4.80156 5.01545 5.10242 5.17326 5.25288 5.29233 5.31126 5.36766 5.67141 5.73183 5.78926 5.80590 5.97611 6.03701 6.14279 6.37821 6.44015 6.73635 7.06934 7.11209 7.20356 8.16585 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013939 B = 0.004431 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.340799 B = 6317.307509 C = 7205.113449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.098 3.902 3 N -0.441 5.441 4 C -0.032 4.032 5 C -0.059 4.059 6 N -0.513 5.513 7 C 0.168 3.832 8 C 0.209 3.791 9 N -0.717 5.717 10 C 0.595 3.405 11 O -0.570 6.570 12 C -0.037 4.037 13 C -0.154 4.154 14 C -0.145 4.145 15 C -0.074 4.074 16 C -0.152 4.152 17 C -0.110 4.110 18 C -0.141 4.141 19 C 0.048 3.952 20 N -0.297 5.297 21 C -0.377 4.377 22 H 0.109 0.891 23 C 0.070 3.930 24 N -0.846 5.846 25 Si 0.905 3.095 26 H -0.230 1.230 27 H -0.282 1.282 28 H -0.278 1.278 29 H 0.096 0.904 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.131 0.869 33 H 0.103 0.897 34 H 0.214 0.786 35 H 0.188 0.812 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.416 0.584 39 H 0.156 0.844 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.146 0.854 43 H 0.104 0.896 44 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.848 -5.639 -1.829 6.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.023 4.023 3 N -0.123 5.123 4 C -0.166 4.166 5 C -0.207 4.207 6 N -0.233 5.233 7 C -0.093 4.093 8 C 0.084 3.916 9 N -0.376 5.376 10 C 0.383 3.617 11 O -0.451 6.451 12 C -0.150 4.150 13 C -0.182 4.182 14 C -0.150 4.150 15 C -0.092 4.092 16 C -0.171 4.171 17 C -0.130 4.130 18 C -0.161 4.161 19 C -0.064 4.064 20 N 0.036 4.964 21 C -0.504 4.504 22 H 0.126 0.874 23 C -0.143 4.143 24 N -0.476 5.476 25 Si 0.729 3.271 26 H -0.154 1.154 27 H -0.208 1.208 28 H -0.204 1.204 29 H 0.115 0.885 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.149 0.851 33 H 0.121 0.879 34 H 0.231 0.769 35 H 0.205 0.795 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.261 0.739 39 H 0.173 0.827 40 H 0.163 0.837 41 H 0.174 0.826 42 H 0.164 0.836 43 H 0.122 0.878 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.600 -5.315 -1.396 6.079 hybrid contribution -0.459 0.539 -1.098 1.306 sum 2.141 -4.776 -2.495 5.798 Atomic orbital electron populations 1.22156 0.94592 1.03773 1.02010 1.22191 0.94950 0.78427 1.06763 1.45677 1.46803 1.13604 1.06227 1.23349 1.06070 0.93294 0.93894 1.22763 1.08304 0.99103 0.90530 1.70142 1.18946 1.20060 1.14177 1.22825 1.06777 0.88572 0.91171 1.19429 0.83726 1.01291 0.87134 1.46730 1.13544 1.65160 1.12133 1.17180 0.85732 0.76571 0.82188 1.90706 1.56655 1.49748 1.47948 1.20526 0.89108 1.14704 0.90683 1.20798 0.93158 1.08566 0.95656 1.18407 0.94602 1.09119 0.92859 1.20649 0.91316 0.98318 0.98928 1.20887 0.97089 1.03514 0.95612 1.21132 0.98356 1.00287 0.93219 1.20284 0.90627 1.05298 0.99881 1.18940 0.88188 1.06778 0.92536 1.40269 1.03694 1.47393 1.05064 1.19088 1.41009 1.10584 0.79696 0.87354 1.25747 0.93571 0.99233 0.95762 1.69672 1.37225 1.32458 1.08207 0.86378 0.81910 0.79867 0.78961 1.15364 1.20778 1.20428 0.88541 0.94543 0.92770 0.85090 0.87914 0.76899 0.79537 0.89336 0.88525 0.73932 0.82665 0.83662 0.82638 0.83603 0.87833 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.34 10.24 71.98 0.74 -3.60 16 2 C 0.10 1.98 6.61 86.38 0.57 2.55 16 3 N -0.44 -12.03 2.75 -514.27 -1.41 -13.44 16 4 C -0.03 -0.79 11.58 83.09 0.96 0.18 16 5 C -0.06 -1.77 11.87 83.52 0.99 -0.78 16 6 N -0.51 -19.15 11.25 -188.13 -2.12 -21.26 16 7 C 0.17 5.73 7.27 138.13 1.00 6.74 16 8 C 0.21 7.25 6.00 85.63 0.51 7.76 16 9 N -0.72 -29.69 5.11 -470.62 -2.41 -32.09 16 10 C 0.59 26.80 7.76 86.51 0.67 27.47 16 11 O -0.57 -26.39 16.84 -4.26 -0.07 -26.47 16 12 C -0.04 -1.74 6.77 39.91 0.27 -1.47 16 13 C -0.15 -6.67 10.55 22.63 0.24 -6.43 16 14 C -0.15 -6.09 6.16 -21.33 -0.13 -6.22 16 15 C -0.07 -2.44 10.06 22.31 0.22 -2.22 16 16 C -0.15 -4.50 9.97 22.03 0.22 -4.28 16 17 C -0.11 -3.67 10.02 22.33 0.22 -3.44 16 18 C -0.14 -5.91 7.05 22.38 0.16 -5.75 16 19 C 0.05 2.24 5.14 39.06 0.20 2.44 16 20 N -0.30 -14.50 2.33 -331.35 -0.77 -15.27 16 21 C -0.38 -18.99 7.88 84.09 0.66 -18.33 16 22 H 0.11 5.60 5.20 -2.91 -0.02 5.58 16 23 C 0.07 3.52 4.98 84.95 0.42 3.95 16 24 N -0.85 -42.89 13.95 21.67 0.30 -42.59 16 25 Si 0.90 42.08 24.52 68.60 1.68 43.76 16 26 H -0.23 -9.89 5.92 99.48 0.59 -9.30 16 27 H -0.28 -14.44 7.11 99.48 0.71 -13.74 16 28 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 29 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.04 1.23 6.03 -2.39 -0.01 1.22 16 31 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.13 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.10 1.85 7.21 -2.39 -0.02 1.84 16 34 H 0.21 3.36 8.06 -2.91 -0.02 3.33 16 35 H 0.19 4.55 8.06 -2.91 -0.02 4.52 16 36 H 0.09 3.17 8.12 -2.39 -0.02 3.15 16 37 H 0.10 2.87 7.16 -2.39 -0.02 2.85 16 38 H 0.42 18.81 4.49 -92.71 -0.42 18.39 16 39 H 0.16 6.00 8.06 -2.91 -0.02 5.97 16 40 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 41 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 42 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 43 H 0.10 4.55 6.33 -2.91 -0.02 4.53 16 44 H 0.29 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -67.04 362.40 3.66 -63.38 By element: Atomic # 1 Polarization: 44.90 SS G_CDS: 0.52 Total: 45.42 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 7.94 Total: -1.45 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -6.41 Total: -124.65 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.07 Total: -26.47 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.68 Total: 43.76 kcal Total: -67.04 3.66 -63.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628619036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.831 kcal (2) G-P(sol) polarization free energy of solvation -67.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds