Wall clock time and date at job start Tue Mar 31 2020 21:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47169 * 2 1 4 4 N 1.40085 * 126.03785 * 270.01614 * 3 2 1 5 5 C 1.30840 * 108.20583 * 179.97438 * 4 3 2 6 6 C 1.39873 * 108.20004 * 359.78742 * 5 4 3 7 7 C 1.34954 * 126.03710 * 90.00298 * 3 2 1 8 8 C 1.50701 * 126.12667 * 359.97438 * 7 3 2 9 9 N 1.46496 * 109.46973 * 273.70660 * 8 7 3 10 10 C 1.34781 * 119.99946 * 179.70856 * 9 8 7 11 11 O 1.21665 * 119.99781 * 4.54811 * 10 9 8 12 12 C 1.46888 * 120.00076 * 184.55795 * 10 9 8 13 13 C 1.36117 * 125.43729 * 185.81068 * 12 10 9 14 14 C 1.41693 * 107.75051 * 179.97438 * 13 12 10 15 15 C 1.40022 * 133.35249 * 179.97438 * 14 13 12 16 16 C 1.36594 * 119.82948 * 179.17455 * 15 14 13 17 17 C 1.38852 * 120.59528 * 0.74455 * 16 15 14 18 18 C 1.37845 * 120.63577 * 359.50598 * 17 16 15 19 19 C 1.39086 * 119.81282 * 0.03293 * 18 17 16 20 20 N 1.37838 * 133.15968 * 180.02562 * 19 18 17 21 21 C 1.36893 * 125.62065 * 359.97438 * 20 19 18 22 22 H 1.08002 * 119.99610 * 222.40086 * 21 20 19 23 23 C 1.39005 * 120.00186 * 42.39794 * 21 20 19 24 24 N 1.31349 * 119.99786 * 20.30764 * 23 21 20 25 25 Si 1.86796 * 120.00290 * 200.02747 * 23 21 20 26 26 H 1.48495 * 109.47435 * 185.23926 * 25 23 21 27 27 H 1.48508 * 109.47007 * 305.24002 * 25 23 21 28 28 H 1.48501 * 109.47178 * 65.23189 * 25 23 21 29 29 H 1.08998 * 109.47644 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47297 * 300.00463 * 1 2 3 31 31 H 1.09006 * 109.46948 * 60.00064 * 1 2 3 32 32 H 1.09003 * 109.47406 * 239.99794 * 2 1 3 33 33 H 1.09000 * 109.46583 * 120.00103 * 2 1 3 34 34 H 1.08004 * 125.89469 * 180.02562 * 5 4 3 35 35 H 1.08003 * 126.03422 * 180.23387 * 6 5 4 36 36 H 1.08994 * 109.46589 * 153.70473 * 8 7 3 37 37 H 1.09003 * 109.47027 * 33.70528 * 8 7 3 38 38 H 0.97004 * 120.00080 * 359.70507 * 9 8 7 39 39 H 1.07998 * 126.12510 * 359.96842 * 13 12 10 40 40 H 1.07999 * 120.08831 * 359.97438 * 15 14 13 41 41 H 1.07999 * 119.69949 * 180.29638 * 16 15 14 42 42 H 1.08006 * 119.67904 * 179.53909 * 17 16 15 43 43 H 1.08006 * 120.09214 * 180.02562 * 18 17 16 44 44 H 0.97001 * 120.00256 * 359.90448 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2927 2.1583 -1.1328 5 6 2.7075 3.3327 -0.7321 6 6 2.7059 3.3428 0.6666 7 6 2.2830 2.1297 1.0913 8 6 2.1287 1.6946 2.5259 9 7 0.7511 1.9335 2.9630 10 6 0.3771 1.6132 4.2177 11 8 1.2021 1.2034 5.0124 12 6 -1.0265 1.7589 4.6255 13 6 -1.5049 1.5766 5.8867 14 6 -2.9018 1.8121 5.8571 15 6 -3.9040 1.7741 6.8343 16 6 -5.1934 2.0734 6.4972 17 6 -5.5240 2.4008 5.1889 18 6 -4.5559 2.4398 4.2085 19 6 -3.2344 2.1482 4.5296 20 7 -2.0720 2.1045 3.7901 21 6 -1.9691 2.3655 2.4502 22 1 -1.3526 1.7380 1.8236 23 6 -2.6582 3.4381 1.8961 24 7 -3.0719 4.4201 2.6641 25 14 -2.9889 3.4868 0.0583 26 1 -3.6215 4.7826 -0.2967 27 1 -1.7079 3.3429 -0.6791 28 1 -3.8999 2.3736 -0.3104 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 2.9971 4.1539 -1.3711 35 1 2.9936 4.1718 1.2963 36 1 2.8133 2.2647 3.1539 37 1 2.3576 0.6322 2.6100 38 1 0.1080 2.3221 2.3495 39 1 -0.9239 1.3016 6.7545 40 1 -3.6560 1.5215 7.8546 41 1 -5.9638 2.0481 7.2535 42 1 -6.5496 2.6277 4.9373 43 1 -4.8228 2.6960 3.1937 44 1 -2.8979 4.3961 3.6181 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633336720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:33 Heat of formation + Delta-G solvation = 97.762051 kcal Electronic energy + Delta-G solvation = -29664.381504 eV Core-core repulsion = 25776.738581 eV Total energy + Delta-G solvation = -3887.642923 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.27795 -40.73089 -38.64469 -36.17027 -34.93264 -34.25872 -33.78726 -30.95860 -30.65862 -29.31465 -29.13439 -28.23816 -26.09116 -24.92127 -23.74848 -22.82986 -21.13270 -21.05393 -20.30602 -19.78495 -19.42385 -18.59068 -17.00385 -16.43323 -15.79385 -15.73269 -15.27180 -14.98563 -14.76875 -14.53960 -14.35811 -14.09671 -14.03826 -13.80899 -13.27973 -13.22727 -13.08015 -12.68486 -12.54568 -12.45408 -12.36806 -12.09857 -11.87649 -11.84392 -11.32015 -11.23575 -10.96723 -10.63949 -10.59006 -10.50525 -10.43385 -9.98872 -9.75069 -9.26832 -9.22128 -8.90689 -8.72400 -8.49812 -7.62164 -7.15555 -6.88021 -4.79514 1.61801 1.78948 2.51318 2.53622 2.85450 2.90271 3.01506 3.01796 3.18915 3.72136 3.82614 4.09889 4.26879 4.48825 4.51147 4.61028 4.80636 4.97753 5.04650 5.11040 5.21015 5.43448 5.57542 5.64341 5.65029 5.75768 5.76174 5.78447 5.86033 5.97220 6.14035 6.20052 6.22788 6.32664 6.46714 6.67338 6.70246 6.77075 6.81829 6.89561 7.02683 7.14844 7.30707 7.39767 7.48996 7.68279 7.71753 7.75253 8.01580 8.11206 8.53664 8.76048 8.99540 9.97527 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012766 B = 0.004619 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.714933 B = 6060.802447 C = 7350.342960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.127 3.873 3 N -0.358 5.358 4 N -0.291 5.291 5 C 0.042 3.958 6 C -0.252 4.252 7 C 0.069 3.931 8 C 0.183 3.817 9 N -0.726 5.726 10 C 0.598 3.402 11 O -0.555 6.555 12 C -0.023 4.023 13 C -0.163 4.163 14 C -0.128 4.128 15 C -0.080 4.080 16 C -0.159 4.159 17 C -0.134 4.134 18 C -0.083 4.083 19 C 0.069 3.931 20 N -0.263 5.263 21 C -0.454 4.454 22 H 0.103 0.897 23 C 0.032 3.968 24 N -0.814 5.814 25 Si 1.068 2.932 26 H -0.269 1.269 27 H -0.273 1.273 28 H -0.273 1.273 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.183 0.817 35 H 0.148 0.852 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.421 0.579 39 H 0.135 0.865 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.612 -3.829 -4.245 7.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.006 3.994 3 N -0.142 5.142 4 N -0.113 5.113 5 C -0.143 4.143 6 C -0.282 4.282 7 C -0.058 4.058 8 C 0.058 3.942 9 N -0.388 5.388 10 C 0.388 3.612 11 O -0.435 6.435 12 C -0.138 4.138 13 C -0.191 4.191 14 C -0.133 4.133 15 C -0.099 4.099 16 C -0.179 4.179 17 C -0.154 4.154 18 C -0.102 4.102 19 C -0.046 4.046 20 N 0.073 4.927 21 C -0.580 4.580 22 H 0.121 0.879 23 C -0.185 4.185 24 N -0.440 5.440 25 Si 0.890 3.110 26 H -0.193 1.193 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.200 0.800 35 H 0.166 0.834 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.267 0.733 39 H 0.152 0.848 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.135 0.865 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.288 -3.993 -6.303 8.606 hybrid contribution 0.561 -0.083 1.595 1.692 sum 4.848 -4.076 -4.709 7.892 Atomic orbital electron populations 1.22325 0.93725 1.03423 1.04193 1.21705 0.95776 0.77807 1.04073 1.48710 1.50320 1.12042 1.03133 1.77320 1.21414 1.04495 1.08069 1.23807 0.99688 0.95832 0.94957 1.21312 1.13752 0.97959 0.95150 1.21015 1.01719 0.92996 0.90110 1.19664 0.86067 1.01234 0.87271 1.46779 1.11849 1.65070 1.15068 1.17227 0.86433 0.76365 0.81188 1.90731 1.52305 1.48093 1.52327 1.20100 0.87548 1.14945 0.91178 1.20407 0.92970 1.10471 0.95220 1.17996 0.93586 1.08284 0.93464 1.20139 0.92049 1.00401 0.97311 1.20342 0.95862 1.05489 0.96161 1.20611 0.97988 1.03819 0.92996 1.20173 0.89893 1.00674 0.99490 1.18422 0.88183 1.06645 0.91306 1.40136 1.02632 1.43641 1.06271 1.20526 1.38179 1.17843 0.81495 0.87942 1.26772 0.93189 0.90067 1.08505 1.70637 1.36844 1.27111 1.09369 0.83496 0.78077 0.77934 0.71470 1.19326 1.19875 1.19854 0.90412 0.90878 0.91469 0.88779 0.89043 0.80001 0.83398 0.89128 0.90828 0.73299 0.84763 0.87409 0.87512 0.87199 0.86529 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 10.24 37.16 0.38 -1.95 16 2 C 0.13 1.53 6.96 -4.04 -0.03 1.50 16 3 N -0.36 -5.24 3.61 -57.14 -0.21 -5.45 16 4 N -0.29 -4.48 12.58 30.63 0.39 -4.10 16 5 C 0.04 0.58 12.03 -17.36 -0.21 0.37 16 6 C -0.25 -3.56 10.72 -40.01 -0.43 -3.98 16 7 C 0.07 1.03 6.30 -82.26 -0.52 0.51 16 8 C 0.18 2.79 5.86 -5.20 -0.03 2.76 16 9 N -0.73 -13.54 5.35 -62.74 -0.34 -13.88 16 10 C 0.60 12.84 7.77 -12.76 -0.10 12.74 16 11 O -0.56 -12.54 16.85 5.22 0.09 -12.46 16 12 C -0.02 -0.53 6.77 -82.25 -0.56 -1.09 16 13 C -0.16 -3.64 10.55 -39.03 -0.41 -4.05 16 14 C -0.13 -2.86 6.16 -106.89 -0.66 -3.52 16 15 C -0.08 -1.55 10.06 -39.51 -0.40 -1.95 16 16 C -0.16 -2.89 9.97 -39.95 -0.40 -3.28 16 17 C -0.13 -2.57 10.02 -39.50 -0.40 -2.97 16 18 C -0.08 -1.83 8.60 -39.41 -0.34 -2.17 16 19 C 0.07 1.63 5.40 -83.83 -0.45 1.17 16 20 N -0.26 -6.24 2.57 -56.08 -0.14 -6.39 16 21 C -0.45 -10.48 7.63 -15.01 -0.11 -10.60 16 22 H 0.10 2.25 4.32 -52.49 -0.23 2.02 16 23 C 0.03 0.75 4.32 -17.47 -0.08 0.68 16 24 N -0.81 -20.48 12.31 55.50 0.68 -19.80 16 25 Si 1.07 20.67 29.97 -169.99 -5.09 15.57 16 26 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 27 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 28 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.15 5.90 -51.93 -0.31 0.84 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 0.97 7.12 -51.93 -0.37 0.60 16 34 H 0.18 1.83 8.06 -52.48 -0.42 1.41 16 35 H 0.15 1.84 8.06 -52.48 -0.42 1.42 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.07 1.04 7.20 -51.93 -0.37 0.67 16 38 H 0.42 8.36 4.41 -40.82 -0.18 8.18 16 39 H 0.13 2.76 8.06 -52.49 -0.42 2.34 16 40 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 42 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 43 H 0.12 2.67 6.86 -52.48 -0.36 2.31 16 44 H 0.29 7.77 6.78 -40.82 -0.28 7.50 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -28.59 367.41 -8.94 -37.53 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -5.12 Total: 19.25 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -4.73 Total: -15.82 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.38 Total: -49.61 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.09 Total: 15.57 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.59 -8.94 -37.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633336720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.291 kcal (2) G-P(sol) polarization free energy of solvation -28.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds