Wall clock time and date at job start Tue Mar 31 2020 21:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47169 * 2 1 4 4 N 1.40085 * 126.03785 * 270.01614 * 3 2 1 5 5 C 1.30840 * 108.20583 * 179.97438 * 4 3 2 6 6 C 1.39873 * 108.20004 * 359.78742 * 5 4 3 7 7 C 1.34954 * 126.03710 * 90.00298 * 3 2 1 8 8 C 1.50701 * 126.12667 * 359.97438 * 7 3 2 9 9 N 1.46496 * 109.46973 * 273.70660 * 8 7 3 10 10 C 1.34781 * 119.99946 * 179.70856 * 9 8 7 11 11 O 1.21665 * 119.99781 * 4.54811 * 10 9 8 12 12 C 1.46888 * 120.00076 * 184.55795 * 10 9 8 13 13 C 1.36117 * 125.43729 * 185.81068 * 12 10 9 14 14 C 1.41693 * 107.75051 * 179.97438 * 13 12 10 15 15 C 1.40022 * 133.35249 * 179.97438 * 14 13 12 16 16 C 1.36594 * 119.82948 * 179.17455 * 15 14 13 17 17 C 1.38852 * 120.59528 * 0.74455 * 16 15 14 18 18 C 1.37845 * 120.63577 * 359.50598 * 17 16 15 19 19 C 1.39086 * 119.81282 * 0.03293 * 18 17 16 20 20 N 1.37838 * 133.15968 * 180.02562 * 19 18 17 21 21 C 1.36893 * 125.62065 * 359.97438 * 20 19 18 22 22 H 1.08002 * 119.99610 * 222.40086 * 21 20 19 23 23 C 1.39005 * 120.00186 * 42.39794 * 21 20 19 24 24 N 1.31349 * 119.99786 * 20.30764 * 23 21 20 25 25 Si 1.86796 * 120.00290 * 200.02747 * 23 21 20 26 26 H 1.48495 * 109.47435 * 185.23926 * 25 23 21 27 27 H 1.48508 * 109.47007 * 305.24002 * 25 23 21 28 28 H 1.48501 * 109.47178 * 65.23189 * 25 23 21 29 29 H 1.08998 * 109.47644 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47297 * 300.00463 * 1 2 3 31 31 H 1.09006 * 109.46948 * 60.00064 * 1 2 3 32 32 H 1.09003 * 109.47406 * 239.99794 * 2 1 3 33 33 H 1.09000 * 109.46583 * 120.00103 * 2 1 3 34 34 H 1.08004 * 125.89469 * 180.02562 * 5 4 3 35 35 H 1.08003 * 126.03422 * 180.23387 * 6 5 4 36 36 H 1.08994 * 109.46589 * 153.70473 * 8 7 3 37 37 H 1.09003 * 109.47027 * 33.70528 * 8 7 3 38 38 H 0.97004 * 120.00080 * 359.70507 * 9 8 7 39 39 H 1.07998 * 126.12510 * 359.96842 * 13 12 10 40 40 H 1.07999 * 120.08831 * 359.97438 * 15 14 13 41 41 H 1.07999 * 119.69949 * 180.29638 * 16 15 14 42 42 H 1.08006 * 119.67904 * 179.53909 * 17 16 15 43 43 H 1.08006 * 120.09214 * 180.02562 * 18 17 16 44 44 H 0.97001 * 120.00256 * 359.90448 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2927 2.1583 -1.1328 5 6 2.7075 3.3327 -0.7321 6 6 2.7059 3.3428 0.6666 7 6 2.2830 2.1297 1.0913 8 6 2.1287 1.6946 2.5259 9 7 0.7511 1.9335 2.9630 10 6 0.3771 1.6132 4.2177 11 8 1.2021 1.2034 5.0124 12 6 -1.0265 1.7589 4.6255 13 6 -1.5049 1.5766 5.8867 14 6 -2.9018 1.8121 5.8571 15 6 -3.9040 1.7741 6.8343 16 6 -5.1934 2.0734 6.4972 17 6 -5.5240 2.4008 5.1889 18 6 -4.5559 2.4398 4.2085 19 6 -3.2344 2.1482 4.5296 20 7 -2.0720 2.1045 3.7901 21 6 -1.9691 2.3655 2.4502 22 1 -1.3526 1.7380 1.8236 23 6 -2.6582 3.4381 1.8961 24 7 -3.0719 4.4201 2.6641 25 14 -2.9889 3.4868 0.0583 26 1 -3.6215 4.7826 -0.2967 27 1 -1.7079 3.3429 -0.6791 28 1 -3.8999 2.3736 -0.3104 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 2.9971 4.1539 -1.3711 35 1 2.9936 4.1718 1.2963 36 1 2.8133 2.2647 3.1539 37 1 2.3576 0.6322 2.6100 38 1 0.1080 2.3221 2.3495 39 1 -0.9239 1.3016 6.7545 40 1 -3.6560 1.5215 7.8546 41 1 -5.9638 2.0481 7.2535 42 1 -6.5496 2.6277 4.9373 43 1 -4.8228 2.6960 3.1937 44 1 -2.8979 4.3961 3.6181 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633336720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:32 Heat of formation + Delta-G solvation = 82.867069 kcal Electronic energy + Delta-G solvation = -29665.027399 eV Core-core repulsion = 25776.738581 eV Total energy + Delta-G solvation = -3888.288818 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.53009 -42.24903 -40.26018 -37.77760 -36.35156 -35.54330 -35.30996 -32.45904 -32.13658 -30.72185 -30.38564 -29.82870 -27.42704 -26.65341 -24.79922 -24.36716 -22.79114 -22.12988 -21.91324 -21.28227 -20.78341 -20.16132 -18.42414 -17.81008 -17.49853 -17.08987 -16.82022 -16.41271 -16.07987 -15.89306 -15.75824 -15.58817 -15.43816 -15.00048 -14.87539 -14.77973 -14.33296 -14.20373 -13.97674 -13.88062 -13.55150 -13.51216 -13.26009 -12.95860 -12.84727 -12.49041 -12.36788 -12.18342 -12.11205 -12.04082 -11.69091 -11.58273 -11.38093 -10.98441 -10.58585 -10.39020 -10.24014 -9.60755 -9.39730 -8.86310 -8.55864 -6.60178 -0.02635 0.63541 0.94679 1.24250 1.41378 1.45647 1.48836 1.64740 1.75807 2.11204 2.35062 2.39220 2.59922 2.85984 3.18321 3.33400 3.55087 3.87525 3.96679 4.00483 4.07230 4.11077 4.24126 4.32080 4.39489 4.44218 4.56030 4.60815 4.63705 4.69121 4.73662 4.81691 4.85704 5.02243 5.06522 5.11569 5.19388 5.26142 5.30315 5.44832 5.67552 5.68739 5.73475 5.82678 5.95041 6.02587 6.05318 6.40240 6.43186 6.66585 6.81309 7.10570 7.26121 8.11882 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012766 B = 0.004619 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.714933 B = 6060.802447 C = 7350.342960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.122 3.878 3 N -0.363 5.363 4 N -0.314 5.314 5 C 0.042 3.958 6 C -0.259 4.259 7 C 0.057 3.943 8 C 0.185 3.815 9 N -0.717 5.717 10 C 0.596 3.404 11 O -0.573 6.573 12 C -0.047 4.047 13 C -0.171 4.171 14 C -0.148 4.148 15 C -0.083 4.083 16 C -0.152 4.152 17 C -0.120 4.120 18 C -0.114 4.114 19 C 0.046 3.954 20 N -0.279 5.279 21 C -0.458 4.458 22 H 0.109 0.891 23 C 0.005 3.995 24 N -0.840 5.840 25 Si 1.108 2.892 26 H -0.273 1.273 27 H -0.265 1.265 28 H -0.260 1.260 29 H 0.099 0.901 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.215 0.785 35 H 0.161 0.839 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.416 0.584 39 H 0.147 0.853 40 H 0.139 0.861 41 H 0.151 0.849 42 H 0.141 0.859 43 H 0.099 0.901 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.145 -4.379 -4.214 7.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.002 3.998 3 N -0.147 5.147 4 N -0.136 5.136 5 C -0.143 4.143 6 C -0.289 4.289 7 C -0.071 4.071 8 C 0.060 3.940 9 N -0.376 5.376 10 C 0.385 3.615 11 O -0.454 6.454 12 C -0.161 4.161 13 C -0.198 4.198 14 C -0.153 4.153 15 C -0.101 4.101 16 C -0.171 4.171 17 C -0.140 4.140 18 C -0.135 4.135 19 C -0.068 4.068 20 N 0.056 4.944 21 C -0.584 4.584 22 H 0.126 0.874 23 C -0.207 4.207 24 N -0.466 5.466 25 Si 0.926 3.074 26 H -0.198 1.198 27 H -0.190 1.190 28 H -0.185 1.185 29 H 0.118 0.882 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.133 0.867 33 H 0.123 0.877 34 H 0.231 0.769 35 H 0.179 0.821 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.261 0.739 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.169 0.831 42 H 0.158 0.842 43 H 0.117 0.883 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.834 -4.563 -6.285 8.661 hybrid contribution 0.655 0.050 1.679 1.803 sum 4.490 -4.513 -4.606 7.857 Atomic orbital electron populations 1.22279 0.94615 1.04253 1.02069 1.21920 0.94963 0.77126 1.05765 1.48922 1.50253 1.12717 1.02801 1.77283 1.22238 1.05339 1.08727 1.24364 0.98618 0.96115 0.95162 1.21628 1.13366 0.98080 0.95839 1.21004 1.02574 0.93646 0.89879 1.19790 0.84129 1.02183 0.87853 1.46710 1.13162 1.63851 1.13890 1.17141 0.85883 0.76549 0.81890 1.90702 1.52483 1.49296 1.52895 1.20500 0.88427 1.15427 0.91794 1.20671 0.93463 1.10249 0.95464 1.18375 0.94186 1.08865 0.93831 1.20570 0.91905 0.99492 0.98152 1.20818 0.96420 1.03380 0.96468 1.21070 0.98757 1.01262 0.92956 1.20234 0.90306 1.03211 0.99710 1.18854 0.88730 1.07096 0.92121 1.40263 1.02980 1.44626 1.06527 1.20738 1.38196 1.17796 0.81716 0.87371 1.27861 0.92408 0.89494 1.10978 1.70739 1.39200 1.28416 1.08256 0.83009 0.78452 0.77984 0.67950 1.19785 1.18975 1.18487 0.88196 0.93829 0.92482 0.86740 0.87706 0.76889 0.82149 0.88430 0.89618 0.73922 0.83575 0.84327 0.83148 0.84156 0.88291 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.44 10.24 71.98 0.74 -3.70 16 2 C 0.12 2.78 6.96 86.38 0.60 3.39 16 3 N -0.36 -10.25 3.61 -334.70 -1.21 -11.46 16 4 N -0.31 -9.25 12.58 -57.02 -0.72 -9.97 16 5 C 0.04 1.08 12.03 85.24 1.03 2.10 16 6 C -0.26 -7.03 10.72 21.99 0.24 -6.80 16 7 C 0.06 1.65 6.30 41.40 0.26 1.91 16 8 C 0.18 5.57 5.86 85.63 0.50 6.08 16 9 N -0.72 -27.13 5.35 -470.63 -2.52 -29.65 16 10 C 0.60 26.11 7.77 86.51 0.67 26.78 16 11 O -0.57 -26.12 16.85 -4.24 -0.07 -26.19 16 12 C -0.05 -2.24 6.77 39.91 0.27 -1.97 16 13 C -0.17 -7.73 10.55 22.63 0.24 -7.49 16 14 C -0.15 -6.58 6.16 -21.34 -0.13 -6.71 16 15 C -0.08 -3.00 10.06 22.32 0.22 -2.78 16 16 C -0.15 -5.00 9.97 22.03 0.22 -4.78 16 17 C -0.12 -4.39 10.02 22.32 0.22 -4.17 16 18 C -0.11 -5.13 8.60 22.38 0.19 -4.94 16 19 C 0.05 2.22 5.40 39.06 0.21 2.43 16 20 N -0.28 -13.67 2.57 -331.35 -0.85 -14.52 16 21 C -0.46 -21.79 7.63 84.09 0.64 -21.15 16 22 H 0.11 4.89 4.32 -2.91 -0.01 4.88 16 23 C 0.00 0.22 4.32 84.95 0.37 0.59 16 24 N -0.84 -43.64 12.31 21.67 0.27 -43.37 16 25 Si 1.11 42.21 29.97 68.60 2.06 44.26 16 26 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 27 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 28 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 29 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.04 1.37 5.90 -2.39 -0.01 1.36 16 31 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.10 2.07 7.12 -2.39 -0.02 2.05 16 34 H 0.21 3.78 8.06 -2.91 -0.02 3.76 16 35 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 36 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.09 2.37 7.20 -2.39 -0.02 2.36 16 38 H 0.42 16.90 4.41 -92.71 -0.41 16.49 16 39 H 0.15 6.04 8.06 -2.91 -0.02 6.02 16 40 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 41 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 42 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 43 H 0.10 4.69 6.86 -2.91 -0.02 4.67 16 44 H 0.27 15.17 6.78 -92.71 -0.63 14.54 16 Total: -1.00 -63.45 367.41 4.23 -59.21 By element: Atomic # 1 Polarization: 52.12 SS G_CDS: 0.78 Total: 52.90 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 6.49 Total: -21.21 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -5.03 Total: -108.97 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.07 Total: -26.19 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.06 Total: 44.26 kcal Total: -63.45 4.23 -59.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633336720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.079 kcal (2) G-P(sol) polarization free energy of solvation -63.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds