Wall clock time and date at job start Tue Mar 31 2020 20:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47396 * 2 1 4 4 C 1.53004 * 109.46786 * 120.00216 * 2 1 3 5 5 H 1.08995 * 109.47106 * 57.48081 * 4 2 1 6 6 N 1.46503 * 109.46799 * 177.48228 * 4 2 1 7 7 C 1.34778 * 119.99622 * 274.99807 * 6 4 2 8 8 O 1.21699 * 120.00628 * 359.97438 * 7 6 4 9 9 C 1.46581 * 119.99467 * 180.02562 * 7 6 4 10 10 C 1.36654 * 125.45507 * 180.02562 * 9 7 6 11 11 C 1.37478 * 113.29600 * 179.97438 * 10 9 7 12 12 C 1.33813 * 115.10089 * 0.02562 * 11 10 9 13 13 S 1.70619 * 110.95632 * 359.75542 * 12 11 10 14 14 C 1.50701 * 109.47051 * 297.47599 * 4 2 1 15 15 O 1.21281 * 120.00478 * 272.61199 * 14 4 2 16 16 N 1.34776 * 119.99439 * 92.60903 * 14 4 2 17 17 C 1.46495 * 120.00247 * 6.01202 * 16 14 4 18 18 C 1.46504 * 119.99535 * 186.01474 * 16 14 4 19 19 H 1.08996 * 109.47218 * 359.97438 * 18 16 14 20 20 C 1.53006 * 109.46978 * 239.99757 * 18 16 14 21 21 C 1.50700 * 109.47245 * 120.00371 * 18 16 14 22 22 H 1.07995 * 120.00049 * 35.04446 * 21 18 16 23 23 C 1.37884 * 119.99672 * 215.04974 * 21 18 16 24 24 N 1.31509 * 119.99785 * 184.64209 * 23 21 18 25 25 Si 1.86797 * 120.00024 * 4.64244 * 23 21 18 26 26 H 1.48502 * 109.47015 * 84.87372 * 25 23 21 27 27 H 1.48496 * 109.46968 * 204.87347 * 25 23 21 28 28 H 1.48505 * 109.47313 * 324.87394 * 25 23 21 29 29 H 1.08997 * 109.46668 * 65.29566 * 1 2 3 30 30 H 1.09002 * 109.46917 * 185.29198 * 1 2 3 31 31 H 1.08994 * 109.46861 * 305.29535 * 1 2 3 32 32 H 1.09000 * 109.47019 * 239.99820 * 2 1 3 33 33 H 1.08993 * 109.47448 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46949 * 300.00155 * 3 2 1 35 35 H 1.08996 * 109.46753 * 59.99722 * 3 2 1 36 36 H 0.96998 * 120.00082 * 94.99959 * 6 4 2 37 37 H 1.07997 * 123.35277 * 359.93073 * 10 9 7 38 38 H 1.08001 * 122.44566 * 180.02562 * 11 10 9 39 39 H 1.07998 * 124.52104 * 180.02562 * 12 11 10 40 40 H 1.09005 * 109.47121 * 275.89199 * 17 16 14 41 41 H 1.08993 * 109.47466 * 35.89676 * 17 16 14 42 42 H 1.09005 * 109.47058 * 155.89971 * 17 16 14 43 43 H 1.09002 * 109.46853 * 54.48569 * 20 18 16 44 44 H 1.08999 * 109.47122 * 294.49668 * 20 18 16 45 45 H 1.08991 * 109.47476 * 174.48605 * 20 18 16 46 46 H 0.97001 * 120.00425 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6402 -1.7351 1.2721 6 7 3.5037 -0.7741 1.2193 7 6 4.1288 -1.7634 0.5506 8 8 3.4773 -2.6131 -0.0280 9 6 5.5933 -1.8165 0.5211 10 6 6.3394 -2.7650 -0.1200 11 6 7.6941 -2.5741 0.0151 12 6 8.0474 -1.5073 0.7416 13 16 6.6717 -0.6663 1.2996 14 6 1.5893 0.0243 2.4789 15 8 2.2636 0.9310 2.9196 16 7 0.4369 -0.3166 3.0890 17 6 -0.3106 -1.4930 2.6380 18 6 -0.0683 0.4896 4.2031 19 1 0.6166 1.3157 4.3937 20 6 -0.1762 -0.3824 5.4557 21 6 -1.4287 1.0350 3.8522 22 1 -2.1102 0.4447 3.2577 23 6 -1.8031 2.2876 4.2902 24 7 -3.0216 2.7267 4.0625 25 14 -0.5796 3.3609 5.2069 26 1 0.2552 4.1052 4.2300 27 1 -1.3131 4.3243 6.0665 28 1 0.2919 2.5064 6.0530 29 1 -0.3632 0.4295 -0.9336 30 1 -0.3633 -1.0233 0.0948 31 1 -0.3633 0.5937 0.8387 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9562 0.8899 36 1 4.0230 -0.0971 1.6808 37 1 5.9078 -3.5835 -0.6768 38 1 8.4202 -3.2367 -0.4324 39 1 9.0672 -1.2150 0.9439 40 1 -0.9439 -1.2195 1.7940 41 1 0.3877 -2.2715 2.3311 42 1 -0.9321 -1.8632 3.4534 43 1 0.7859 -0.8552 5.6532 44 1 -0.9332 -1.1508 5.2995 45 1 -0.4578 0.2375 6.3068 46 1 -3.2853 3.6078 4.3709 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647651340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:36 Heat of formation + Delta-G solvation = -37.351416 kcal Electronic energy + Delta-G solvation = -28288.138756 eV Core-core repulsion = 24497.788074 eV Total energy + Delta-G solvation = -3790.350683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.54492 -39.17657 -37.66640 -36.01394 -35.41985 -33.39064 -32.67048 -30.54871 -30.12668 -27.19346 -26.97159 -26.13608 -25.28262 -24.77462 -21.96577 -21.68889 -19.86124 -19.65875 -18.89281 -18.03179 -17.25899 -16.51829 -16.33378 -15.84727 -15.63184 -15.55430 -14.88549 -14.75633 -14.16866 -13.81234 -13.65589 -13.37045 -13.04395 -12.98876 -12.87383 -12.70784 -12.55843 -12.48722 -12.37606 -12.10873 -11.83475 -11.60481 -11.36736 -11.20548 -11.14592 -11.05895 -10.81408 -10.72944 -10.62703 -10.44579 -10.17215 -9.85620 -9.41054 -9.29756 -9.13022 -8.91047 -8.84695 -8.66023 -7.76305 -6.21812 -4.24257 0.26454 1.21565 1.62921 2.15303 2.82571 3.06768 3.18822 3.28058 3.33989 3.40271 3.81734 4.33215 4.60680 4.70789 4.85671 4.99953 5.02407 5.08274 5.19064 5.19633 5.33409 5.51888 5.66453 5.71317 5.81866 5.89517 5.95028 6.00746 6.03956 6.08033 6.12704 6.20429 6.27714 6.31680 6.33432 6.36149 6.53127 6.58978 6.70974 6.87048 7.00386 7.35397 7.40712 7.56642 7.99225 8.08342 8.41842 8.73727 8.81641 9.40391 10.89914 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017321 B = 0.003329 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.151364 B = 8410.003774 C = 8868.308001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.093 4.093 3 C -0.150 4.150 4 C 0.128 3.872 5 H 0.110 0.890 6 N -0.706 5.706 7 C 0.592 3.408 8 O -0.531 6.531 9 C -0.264 4.264 10 C -0.058 4.058 11 C -0.151 4.151 12 C -0.234 4.234 13 S 0.211 5.789 14 C 0.508 3.492 15 O -0.554 6.554 16 N -0.578 5.578 17 C 0.072 3.928 18 C 0.223 3.777 19 H 0.065 0.935 20 C -0.148 4.148 21 C -0.525 4.525 22 H 0.080 0.920 23 C 0.081 3.919 24 N -0.889 5.889 25 Si 0.872 3.128 26 H -0.271 1.271 27 H -0.288 1.288 28 H -0.264 1.264 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.406 0.594 37 H 0.154 0.846 38 H 0.145 0.855 39 H 0.168 0.832 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.026 0.974 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.983 -8.992 -7.526 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.113 4.113 3 C -0.207 4.207 4 C 0.020 3.980 5 H 0.127 0.873 6 N -0.358 5.358 7 C 0.378 3.622 8 O -0.409 6.409 9 C -0.384 4.384 10 C -0.091 4.091 11 C -0.182 4.182 12 C -0.372 4.372 13 S 0.478 5.522 14 C 0.294 3.706 15 O -0.433 6.433 16 N -0.308 5.308 17 C -0.072 4.072 18 C 0.123 3.877 19 H 0.082 0.918 20 C -0.206 4.206 21 C -0.563 4.563 22 H 0.098 0.902 23 C -0.123 4.123 24 N -0.526 5.526 25 Si 0.699 3.301 26 H -0.197 1.197 27 H -0.214 1.214 28 H -0.188 1.188 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.243 0.757 37 H 0.172 0.828 38 H 0.163 0.837 39 H 0.186 0.814 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.045 0.955 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.479 -7.633 -6.741 20.230 hybrid contribution 1.095 -0.372 -0.221 1.178 sum 18.575 -8.006 -6.962 21.391 Atomic orbital electron populations 1.22096 0.93490 1.02574 1.03428 1.21345 0.96969 0.96840 0.96101 1.21879 1.00624 0.95409 1.02788 1.21186 0.80131 1.01813 0.94893 0.87266 1.45681 1.07066 1.29198 1.53842 1.16903 0.85201 0.81273 0.78824 1.90821 1.66050 1.39152 1.44884 1.24661 0.97199 1.04487 1.12062 1.20801 0.92427 0.98342 0.97535 1.20047 0.95965 0.99549 1.02682 1.25376 1.04557 1.01648 1.05608 1.83348 0.94266 1.26064 1.48526 1.20193 0.81953 0.84306 0.84161 1.90624 1.54827 1.31638 1.66230 1.48311 1.21057 1.27665 1.33772 1.21924 0.96616 0.87136 1.01487 1.19366 0.95802 0.90361 0.82178 0.91765 1.22226 0.98842 1.00277 0.99303 1.21104 0.98003 1.02059 1.35102 0.90230 1.24946 0.95027 0.97271 0.95081 1.69879 1.17636 1.19163 1.45905 0.86930 0.81578 0.80933 0.80633 1.19668 1.21381 1.18829 0.92314 0.92101 0.90259 0.90207 0.93076 0.92686 0.91144 0.75719 0.82834 0.83740 0.81398 0.91703 0.92753 0.90435 0.95458 0.93028 0.92546 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 7.42 37.16 0.28 -2.12 16 2 C -0.09 -1.40 2.88 -90.62 -0.26 -1.66 16 3 C -0.15 -2.32 8.60 37.16 0.32 -2.00 16 4 C 0.13 2.03 1.82 -69.08 -0.13 1.91 16 5 H 0.11 1.70 5.27 -51.93 -0.27 1.43 16 6 N -0.71 -10.40 4.40 -56.27 -0.25 -10.65 16 7 C 0.59 8.60 7.75 -12.90 -0.10 8.50 16 8 O -0.53 -8.93 16.50 5.19 0.09 -8.85 16 9 C -0.26 -3.14 6.45 -36.79 -0.24 -3.38 16 10 C -0.06 -0.59 10.01 -40.43 -0.40 -1.00 16 11 C -0.15 -1.23 10.15 -41.41 -0.42 -1.65 16 12 C -0.23 -1.82 10.92 29.18 0.32 -1.50 16 13 S 0.21 2.01 22.16 -107.50 -2.38 -0.38 16 14 C 0.51 9.75 5.18 -10.99 -0.06 9.69 16 15 O -0.55 -12.06 14.31 5.56 0.08 -11.98 16 16 N -0.58 -11.38 2.26 -175.26 -0.40 -11.77 16 17 C 0.07 1.15 8.18 59.84 0.49 1.64 16 18 C 0.22 5.12 2.28 -69.08 -0.16 4.96 16 19 H 0.06 1.62 4.08 -51.93 -0.21 1.41 16 20 C -0.15 -3.02 9.06 37.16 0.34 -2.68 16 21 C -0.52 -13.72 8.82 -34.44 -0.30 -14.02 16 22 H 0.08 2.21 7.67 -52.49 -0.40 1.80 16 23 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 24 N -0.89 -25.92 13.96 55.43 0.77 -25.14 16 25 Si 0.87 21.46 26.98 -169.99 -4.59 16.87 16 26 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.26 -6.28 6.83 56.52 0.39 -5.90 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.83 6.53 -51.93 -0.34 0.49 16 31 H 0.08 1.46 6.69 -51.93 -0.35 1.11 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.74 7.68 -51.93 -0.40 0.34 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.30 6.50 -51.93 -0.34 0.96 16 36 H 0.41 5.84 7.00 -40.82 -0.29 5.56 16 37 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 38 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.06 1.02 5.33 -51.93 -0.28 0.74 16 41 H 0.05 0.74 6.23 -51.93 -0.32 0.42 16 42 H 0.08 1.23 6.55 -51.93 -0.34 0.89 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.98 6.89 -51.93 -0.36 0.62 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -31.41 376.21 -7.86 -39.27 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.43 Total: 8.13 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -0.42 Total: -1.17 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.13 Total: -47.56 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.17 Total: -20.83 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.59 Total: 16.87 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.38 Total: -0.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.41 -7.86 -39.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647651340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.915 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds