Wall clock time and date at job start Tue Mar 31 2020 20:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47396 * 2 1 4 4 C 1.53004 * 109.46786 * 120.00216 * 2 1 3 5 5 H 1.08995 * 109.47106 * 57.48081 * 4 2 1 6 6 N 1.46503 * 109.46799 * 177.48228 * 4 2 1 7 7 C 1.34778 * 119.99622 * 274.99807 * 6 4 2 8 8 O 1.21699 * 120.00628 * 359.97438 * 7 6 4 9 9 C 1.46581 * 119.99467 * 180.02562 * 7 6 4 10 10 C 1.36654 * 125.45507 * 180.02562 * 9 7 6 11 11 C 1.37478 * 113.29600 * 179.97438 * 10 9 7 12 12 C 1.33813 * 115.10089 * 0.02562 * 11 10 9 13 13 S 1.70619 * 110.95632 * 359.75542 * 12 11 10 14 14 C 1.50701 * 109.47051 * 297.47599 * 4 2 1 15 15 O 1.21281 * 120.00478 * 272.61199 * 14 4 2 16 16 N 1.34776 * 119.99439 * 92.60903 * 14 4 2 17 17 C 1.46495 * 120.00247 * 6.01202 * 16 14 4 18 18 C 1.46504 * 119.99535 * 186.01474 * 16 14 4 19 19 H 1.08996 * 109.47218 * 359.97438 * 18 16 14 20 20 C 1.53006 * 109.46978 * 239.99757 * 18 16 14 21 21 C 1.50700 * 109.47245 * 120.00371 * 18 16 14 22 22 H 1.07995 * 120.00049 * 35.04446 * 21 18 16 23 23 C 1.37884 * 119.99672 * 215.04974 * 21 18 16 24 24 N 1.31509 * 119.99785 * 184.64209 * 23 21 18 25 25 Si 1.86797 * 120.00024 * 4.64244 * 23 21 18 26 26 H 1.48502 * 109.47015 * 84.87372 * 25 23 21 27 27 H 1.48496 * 109.46968 * 204.87347 * 25 23 21 28 28 H 1.48505 * 109.47313 * 324.87394 * 25 23 21 29 29 H 1.08997 * 109.46668 * 65.29566 * 1 2 3 30 30 H 1.09002 * 109.46917 * 185.29198 * 1 2 3 31 31 H 1.08994 * 109.46861 * 305.29535 * 1 2 3 32 32 H 1.09000 * 109.47019 * 239.99820 * 2 1 3 33 33 H 1.08993 * 109.47448 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46949 * 300.00155 * 3 2 1 35 35 H 1.08996 * 109.46753 * 59.99722 * 3 2 1 36 36 H 0.96998 * 120.00082 * 94.99959 * 6 4 2 37 37 H 1.07997 * 123.35277 * 359.93073 * 10 9 7 38 38 H 1.08001 * 122.44566 * 180.02562 * 11 10 9 39 39 H 1.07998 * 124.52104 * 180.02562 * 12 11 10 40 40 H 1.09005 * 109.47121 * 275.89199 * 17 16 14 41 41 H 1.08993 * 109.47466 * 35.89676 * 17 16 14 42 42 H 1.09005 * 109.47058 * 155.89971 * 17 16 14 43 43 H 1.09002 * 109.46853 * 54.48569 * 20 18 16 44 44 H 1.08999 * 109.47122 * 294.49668 * 20 18 16 45 45 H 1.08991 * 109.47476 * 174.48605 * 20 18 16 46 46 H 0.97001 * 120.00425 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6402 -1.7351 1.2721 6 7 3.5037 -0.7741 1.2193 7 6 4.1288 -1.7634 0.5506 8 8 3.4773 -2.6131 -0.0280 9 6 5.5933 -1.8165 0.5211 10 6 6.3394 -2.7650 -0.1200 11 6 7.6941 -2.5741 0.0151 12 6 8.0474 -1.5073 0.7416 13 16 6.6717 -0.6663 1.2996 14 6 1.5893 0.0243 2.4789 15 8 2.2636 0.9310 2.9196 16 7 0.4369 -0.3166 3.0890 17 6 -0.3106 -1.4930 2.6380 18 6 -0.0683 0.4896 4.2031 19 1 0.6166 1.3157 4.3937 20 6 -0.1762 -0.3824 5.4557 21 6 -1.4287 1.0350 3.8522 22 1 -2.1102 0.4447 3.2577 23 6 -1.8031 2.2876 4.2902 24 7 -3.0216 2.7267 4.0625 25 14 -0.5796 3.3609 5.2069 26 1 0.2552 4.1052 4.2300 27 1 -1.3131 4.3243 6.0665 28 1 0.2919 2.5064 6.0530 29 1 -0.3632 0.4295 -0.9336 30 1 -0.3633 -1.0233 0.0948 31 1 -0.3633 0.5937 0.8387 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9562 0.8899 36 1 4.0230 -0.0971 1.6808 37 1 5.9078 -3.5835 -0.6768 38 1 8.4202 -3.2367 -0.4324 39 1 9.0672 -1.2150 0.9439 40 1 -0.9439 -1.2195 1.7940 41 1 0.3877 -2.2715 2.3311 42 1 -0.9321 -1.8632 3.4534 43 1 0.7859 -0.8552 5.6532 44 1 -0.9332 -1.1508 5.2995 45 1 -0.4578 0.2375 6.3068 46 1 -3.2853 3.6078 4.3709 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647651340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:35 Heat of formation + Delta-G solvation = -56.913065 kcal Electronic energy + Delta-G solvation = -28288.987013 eV Core-core repulsion = 24497.788074 eV Total energy + Delta-G solvation = -3791.198939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.87791 -40.42129 -38.49130 -37.47534 -36.91619 -34.78649 -34.44437 -32.28160 -30.99369 -28.40897 -28.27392 -27.55540 -27.15426 -25.66045 -23.48946 -22.71236 -21.35599 -20.59445 -19.80645 -19.51763 -19.07788 -17.91353 -17.66947 -17.10210 -16.90431 -16.67039 -16.29270 -16.00178 -15.56395 -15.19207 -14.77527 -14.68966 -14.61380 -14.27765 -14.19143 -14.04183 -13.81380 -13.68787 -13.45488 -13.37696 -13.20160 -13.08019 -13.03707 -12.75068 -12.58227 -12.34376 -12.29464 -12.05112 -11.91618 -11.90159 -11.82732 -11.31041 -11.26441 -10.78570 -10.72368 -10.30050 -9.86386 -9.57261 -9.38585 -8.35283 -6.38587 -0.50904 0.47474 0.94271 1.27601 1.33839 1.38644 1.41182 1.50837 1.79305 2.09732 2.27966 2.39552 3.04938 3.41613 3.67181 3.76126 3.83325 4.06458 4.13955 4.27558 4.35623 4.38284 4.48728 4.54799 4.56538 4.65262 4.71080 4.74374 4.81163 4.86297 4.88204 4.99477 5.01792 5.06940 5.07794 5.12903 5.20889 5.29588 5.35731 5.37488 5.41912 5.53067 5.76866 6.14973 6.26945 6.64259 6.68116 6.94013 7.16585 7.30592 8.79854 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017321 B = 0.003329 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.151364 B = 8410.003774 C = 8868.308001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.087 4.087 3 C -0.145 4.145 4 C 0.137 3.863 5 H 0.117 0.883 6 N -0.706 5.706 7 C 0.594 3.406 8 O -0.560 6.560 9 C -0.302 4.302 10 C -0.050 4.050 11 C -0.157 4.157 12 C -0.214 4.214 13 S 0.208 5.792 14 C 0.506 3.494 15 O -0.583 6.583 16 N -0.584 5.584 17 C 0.068 3.932 18 C 0.224 3.776 19 H 0.043 0.957 20 C -0.141 4.141 21 C -0.513 4.513 22 H 0.057 0.943 23 C 0.032 3.968 24 N -0.932 5.932 25 Si 0.921 3.079 26 H -0.283 1.283 27 H -0.280 1.280 28 H -0.251 1.251 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.035 0.965 36 H 0.407 0.593 37 H 0.155 0.845 38 H 0.174 0.826 39 H 0.200 0.800 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.045 0.955 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.762 -10.463 -8.069 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.107 4.107 3 C -0.202 4.202 4 C 0.029 3.971 5 H 0.135 0.865 6 N -0.358 5.358 7 C 0.383 3.617 8 O -0.441 6.441 9 C -0.422 4.422 10 C -0.085 4.085 11 C -0.187 4.187 12 C -0.352 4.352 13 S 0.475 5.525 14 C 0.293 3.707 15 O -0.464 6.464 16 N -0.314 5.314 17 C -0.074 4.074 18 C 0.122 3.878 19 H 0.061 0.939 20 C -0.200 4.200 21 C -0.552 4.552 22 H 0.075 0.925 23 C -0.168 4.168 24 N -0.572 5.572 25 Si 0.747 3.253 26 H -0.209 1.209 27 H -0.206 1.206 28 H -0.175 1.175 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.244 0.756 37 H 0.173 0.827 38 H 0.191 0.809 39 H 0.217 0.783 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.273 -9.126 -7.278 23.394 hybrid contribution 0.331 0.015 -0.132 0.357 sum 20.604 -9.112 -7.411 23.716 Atomic orbital electron populations 1.22034 0.93545 1.02939 1.02545 1.21336 0.96811 0.96499 0.96067 1.21820 1.01114 0.95526 1.01757 1.21053 0.81166 1.01534 0.93317 0.86543 1.45669 1.06391 1.29553 1.54173 1.17211 0.86294 0.80367 0.77854 1.90790 1.67042 1.40067 1.46164 1.24487 0.96073 1.06709 1.14940 1.21062 0.93458 0.97609 0.96345 1.20301 0.95403 1.00188 1.02848 1.25799 1.05230 1.00483 1.03703 1.83388 0.94787 1.25853 1.48478 1.20702 0.81414 0.83966 0.84598 1.90600 1.55749 1.32969 1.67110 1.48190 1.21610 1.28260 1.33316 1.22114 0.97158 0.86468 1.01644 1.19149 0.93349 0.90983 0.84286 0.93940 1.22102 1.00322 1.00063 0.97509 1.21297 0.98989 1.01474 1.33404 0.92517 1.25564 0.96162 0.98682 0.96356 1.69978 1.19258 1.19787 1.48148 0.86149 0.79826 0.79705 0.79659 1.20891 1.20618 1.17505 0.90947 0.90552 0.93888 0.88901 0.92264 0.91165 0.94601 0.75573 0.82731 0.80865 0.78302 0.91561 0.89856 0.90139 0.93577 0.91784 0.93091 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 7.42 71.98 0.53 -4.01 16 2 C -0.09 -2.56 2.88 -10.79 -0.03 -2.59 16 3 C -0.14 -4.45 8.60 71.98 0.62 -3.83 16 4 C 0.14 4.27 1.82 44.25 0.08 4.35 16 5 H 0.12 3.45 5.27 -2.39 -0.01 3.44 16 6 N -0.71 -20.33 4.40 -450.16 -1.98 -22.31 16 7 C 0.59 16.74 7.75 86.42 0.67 17.41 16 8 O -0.56 -18.34 16.50 -4.35 -0.07 -18.41 16 9 C -0.30 -6.80 6.45 24.08 0.16 -6.65 16 10 C -0.05 -0.93 10.01 21.72 0.22 -0.71 16 11 C -0.16 -2.03 10.15 21.08 0.21 -1.82 16 12 C -0.21 -2.59 10.92 66.81 0.73 -1.86 16 13 S 0.21 3.58 22.16 -56.49 -1.25 2.32 16 14 C 0.51 19.35 5.18 87.66 0.45 19.81 16 15 O -0.58 -25.67 14.31 -3.03 -0.04 -25.71 16 16 N -0.58 -22.82 2.26 -826.79 -1.86 -24.69 16 17 C 0.07 2.13 8.18 127.77 1.05 3.17 16 18 C 0.22 10.28 2.28 44.25 0.10 10.38 16 19 H 0.04 2.15 4.08 -2.39 -0.01 2.14 16 20 C -0.14 -5.60 9.06 71.98 0.65 -4.94 16 21 C -0.51 -27.32 8.82 25.60 0.23 -27.10 16 22 H 0.06 3.23 7.67 -2.91 -0.02 3.21 16 23 C 0.03 1.81 5.47 84.66 0.46 2.27 16 24 N -0.93 -55.79 13.96 21.45 0.30 -55.50 16 25 Si 0.92 45.00 26.98 68.60 1.85 46.85 16 26 H -0.28 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 28 H -0.25 -11.63 6.83 99.48 0.68 -10.95 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.08 1.99 6.53 -2.39 -0.02 1.98 16 31 H 0.04 1.60 6.69 -2.39 -0.02 1.58 16 32 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.06 1.68 7.68 -2.39 -0.02 1.66 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.03 1.34 6.50 -2.39 -0.02 1.33 16 36 H 0.41 11.59 7.00 -92.71 -0.65 10.94 16 37 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 38 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 39 H 0.20 1.13 8.06 -2.91 -0.02 1.10 16 40 H 0.07 2.05 5.33 -2.38 -0.01 2.03 16 41 H 0.08 2.11 6.23 -2.39 -0.01 2.09 16 42 H 0.08 2.45 6.55 -2.38 -0.02 2.44 16 43 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 2.34 6.89 -2.39 -0.02 2.33 16 45 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -69.41 376.21 3.41 -66.01 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.34 Total: 27.54 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 6.13 Total: 3.89 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -3.55 Total: -102.49 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -0.12 Total: -44.12 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.85 Total: 46.85 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -1.25 Total: 2.32 kcal Total: -69.41 3.41 -66.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647651340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.095 kcal (2) G-P(sol) polarization free energy of solvation -69.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds