Wall clock time and date at job start Tue Mar 31 2020 20:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47561 * 2 1 4 4 C 1.53005 * 109.47093 * 119.99480 * 2 1 3 5 5 H 1.09007 * 109.46836 * 59.01638 * 4 2 1 6 6 N 1.46491 * 109.47468 * 179.01710 * 4 2 1 7 7 C 1.34781 * 120.00308 * 275.00232 * 6 4 2 8 8 O 1.21703 * 119.99755 * 0.02562 * 7 6 4 9 9 C 1.46578 * 120.00166 * 179.97438 * 7 6 4 10 10 C 1.36651 * 125.46135 * 180.02562 * 9 7 6 11 11 C 1.37470 * 113.30028 * 180.02562 * 10 9 7 12 12 C 1.33820 * 115.09784 * 359.97438 * 11 10 9 13 13 S 1.70614 * 110.95569 * 359.73275 * 12 11 10 14 14 C 1.50698 * 109.47150 * 299.01982 * 4 2 1 15 15 O 1.21279 * 120.00289 * 275.10638 * 14 4 2 16 16 N 1.34783 * 120.00102 * 95.10652 * 14 4 2 17 17 C 1.46500 * 119.99724 * 5.27352 * 16 14 4 18 18 C 1.46495 * 119.99919 * 185.27571 * 16 14 4 19 19 H 1.08997 * 109.47359 * 359.97438 * 18 16 14 20 20 C 1.53004 * 109.46960 * 120.00176 * 18 16 14 21 21 C 1.50709 * 109.46849 * 239.99900 * 18 16 14 22 22 H 1.07995 * 119.99815 * 0.02562 * 21 18 16 23 23 C 1.37879 * 119.99689 * 180.02562 * 21 18 16 24 24 N 1.31516 * 120.00248 * 0.02562 * 23 21 18 25 25 Si 1.86796 * 119.99771 * 179.97438 * 23 21 18 26 26 H 1.48507 * 109.47074 * 60.00417 * 25 23 21 27 27 H 1.48506 * 109.47018 * 179.97438 * 25 23 21 28 28 H 1.48491 * 109.47441 * 300.00058 * 25 23 21 29 29 H 1.08998 * 109.47689 * 174.06915 * 1 2 3 30 30 H 1.09007 * 109.47128 * 294.07145 * 1 2 3 31 31 H 1.08999 * 109.47329 * 54.06414 * 1 2 3 32 32 H 1.08999 * 109.47539 * 239.99468 * 2 1 3 33 33 H 1.08992 * 109.47435 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46423 * 299.99818 * 3 2 1 35 35 H 1.09002 * 109.47611 * 59.99058 * 3 2 1 36 36 H 0.97001 * 120.00400 * 94.99791 * 6 4 2 37 37 H 1.08003 * 123.34357 * 359.97438 * 10 9 7 38 38 H 1.07993 * 122.44742 * 180.02562 * 11 10 9 39 39 H 1.08000 * 124.51820 * 180.02562 * 12 11 10 40 40 H 1.09008 * 109.47205 * 84.06315 * 17 16 14 41 41 H 1.08996 * 109.47441 * 324.06463 * 17 16 14 42 42 H 1.09001 * 109.47272 * 204.06014 * 17 16 14 43 43 H 1.09005 * 109.46785 * 179.97438 * 20 18 16 44 44 H 1.08996 * 109.47066 * 299.99975 * 20 18 16 45 45 H 1.09004 * 109.47237 * 60.00291 * 20 18 16 46 46 H 0.96993 * 120.00355 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6622 -1.7437 1.2583 6 7 3.5047 -0.7418 1.2377 7 6 4.1597 -1.7111 0.5684 8 8 3.5343 -2.5690 -0.0266 9 6 5.6253 -1.7313 0.5562 10 6 6.4001 -2.6574 -0.0836 11 6 7.7484 -2.4382 0.0705 12 6 8.0690 -1.3700 0.8100 13 16 6.6682 -0.5634 1.3562 14 6 1.5576 0.0032 2.4796 15 8 2.1823 0.9493 2.9103 16 7 0.4318 -0.4003 3.1013 17 6 -0.2595 -1.6111 2.6516 18 6 -0.1005 0.3720 4.2266 19 1 0.5432 1.2313 4.4145 20 6 -1.5126 0.8557 3.8906 21 6 -0.1469 -0.4985 5.4560 22 1 0.1871 -1.5242 5.4042 23 6 -0.6158 0.0146 6.6467 24 7 -1.0230 1.2636 6.7096 25 14 -0.6740 -1.0646 8.1703 26 1 0.6965 -1.5341 8.4970 27 1 -1.2135 -0.2817 9.3111 28 1 -1.5505 -2.2355 7.9144 29 1 -0.3634 -1.0221 -0.1062 30 1 -0.3634 0.4192 0.9384 31 1 -0.3634 0.6031 -0.8321 32 1 1.8933 -0.5139 -0.8899 33 1 3.1299 1.4424 -0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 4.0032 -0.0578 1.7115 37 1 5.9935 -3.4802 -0.6530 38 1 8.4944 -3.0806 -0.3735 39 1 9.0795 -1.0572 1.0277 40 1 0.2011 -2.4849 3.1127 41 1 -0.1846 -1.6908 1.5672 42 1 -1.3092 -1.5588 2.9406 43 1 -1.9088 1.4299 4.7282 44 1 -1.4791 1.4852 3.0015 45 1 -2.1562 -0.0039 3.7032 46 1 -1.3532 1.6245 7.5472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647651342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:38 Heat of formation + Delta-G solvation = -37.413191 kcal Electronic energy + Delta-G solvation = -28105.537113 eV Core-core repulsion = 24315.183751 eV Total energy + Delta-G solvation = -3790.353361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50939 -39.10995 -37.61058 -35.96121 -35.35323 -33.41747 -32.79312 -30.20307 -29.60694 -27.12623 -27.02334 -26.04265 -25.24210 -24.74358 -22.02121 -21.66842 -19.90826 -19.62679 -18.85321 -18.00299 -16.66568 -16.46602 -16.44470 -15.80229 -15.52048 -15.41175 -14.88300 -14.61246 -14.21231 -13.89304 -13.59661 -13.50754 -13.01530 -12.96851 -12.83988 -12.65732 -12.54598 -12.48893 -12.18536 -11.74697 -11.62778 -11.56929 -11.19257 -11.15157 -11.09163 -10.85901 -10.83473 -10.75680 -10.69469 -10.29833 -10.19867 -10.13417 -9.33205 -9.20736 -9.07829 -8.84914 -8.79044 -8.45153 -7.66443 -6.10001 -4.17928 0.31422 1.26876 1.68277 2.19913 2.84033 3.11795 3.26837 3.31867 3.33116 3.34596 3.89092 4.37884 4.64329 4.75077 4.91574 4.95800 5.05797 5.08592 5.20633 5.23472 5.24389 5.52467 5.66567 5.72302 5.76730 5.83265 5.93748 5.97562 6.02071 6.07089 6.08808 6.14103 6.26065 6.32115 6.42582 6.52908 6.71944 6.77131 6.99694 7.33009 7.43086 7.45706 7.67755 7.96308 8.08278 8.15134 8.43631 8.75631 8.92692 9.48576 10.95191 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.003368 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.028967 B = 8312.623438 C = 9381.739397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.095 4.095 3 C -0.149 4.149 4 C 0.128 3.872 5 H 0.108 0.892 6 N -0.704 5.704 7 C 0.593 3.407 8 O -0.532 6.532 9 C -0.264 4.264 10 C -0.058 4.058 11 C -0.152 4.152 12 C -0.234 4.234 13 S 0.214 5.786 14 C 0.507 3.493 15 O -0.546 6.546 16 N -0.583 5.583 17 C 0.072 3.928 18 C 0.259 3.741 19 H 0.064 0.936 20 C -0.148 4.148 21 C -0.526 4.526 22 H 0.058 0.942 23 C 0.066 3.934 24 N -0.888 5.888 25 Si 0.898 3.102 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.277 1.277 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.407 0.593 37 H 0.154 0.846 38 H 0.145 0.855 39 H 0.169 0.831 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.012 0.988 45 H 0.031 0.969 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.915 -4.051 -14.550 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.115 4.115 3 C -0.206 4.206 4 C 0.019 3.981 5 H 0.125 0.875 6 N -0.356 5.356 7 C 0.379 3.621 8 O -0.410 6.410 9 C -0.385 4.385 10 C -0.091 4.091 11 C -0.183 4.183 12 C -0.372 4.372 13 S 0.481 5.519 14 C 0.292 3.708 15 O -0.425 6.425 16 N -0.313 5.313 17 C -0.071 4.071 18 C 0.159 3.841 19 H 0.082 0.918 20 C -0.206 4.206 21 C -0.565 4.565 22 H 0.077 0.923 23 C -0.137 4.137 24 N -0.526 5.526 25 Si 0.726 3.274 26 H -0.203 1.203 27 H -0.212 1.212 28 H -0.202 1.202 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.243 0.757 37 H 0.171 0.829 38 H 0.162 0.838 39 H 0.186 0.814 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.113 0.887 44 H 0.031 0.969 45 H 0.050 0.950 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.425 -2.703 -13.662 18.014 hybrid contribution 0.591 -1.693 0.278 1.815 sum 12.017 -4.396 -13.384 18.516 Atomic orbital electron populations 1.22048 0.94092 1.02083 1.03196 1.21355 0.96525 0.97084 0.96573 1.21874 1.00999 0.95264 1.02499 1.21131 0.80207 1.01943 0.94777 0.87459 1.45649 1.06809 1.29883 1.53292 1.16905 0.85073 0.81260 0.78901 1.90814 1.67743 1.38078 1.44400 1.24652 0.97209 1.04738 1.11857 1.20789 0.92178 0.98486 0.97688 1.20036 0.96221 0.99439 1.02595 1.25383 1.04480 1.01868 1.05502 1.83370 0.94312 1.26229 1.47969 1.20127 0.81820 0.84759 0.84110 1.90640 1.55824 1.29431 1.66565 1.48223 1.24210 1.25859 1.33021 1.21859 0.99212 0.87575 0.98468 1.18975 0.91630 0.92015 0.81459 0.91837 1.22120 0.98908 0.99441 1.00142 1.21275 1.43243 0.98222 0.93745 0.92329 1.24875 0.94959 0.95099 0.98741 1.69857 1.42599 1.13442 1.26734 0.86557 0.78430 0.80283 0.82135 1.20265 1.21162 1.20207 0.92052 0.91188 0.92114 0.90049 0.92863 0.92828 0.91152 0.75657 0.82875 0.83773 0.81398 0.93267 0.92109 0.90153 0.88710 0.96904 0.94988 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 7.79 37.15 0.29 -1.75 16 2 C -0.10 -1.34 2.90 -90.62 -0.26 -1.60 16 3 C -0.15 -2.09 8.60 37.16 0.32 -1.77 16 4 C 0.13 2.05 1.78 -69.09 -0.12 1.93 16 5 H 0.11 1.73 5.68 -51.93 -0.29 1.44 16 6 N -0.70 -10.75 4.33 -56.28 -0.24 -10.99 16 7 C 0.59 8.92 7.75 -12.90 -0.10 8.82 16 8 O -0.53 -9.18 16.50 5.19 0.09 -9.09 16 9 C -0.26 -3.30 6.45 -36.79 -0.24 -3.54 16 10 C -0.06 -0.63 10.01 -40.43 -0.40 -1.03 16 11 C -0.15 -1.31 10.15 -41.41 -0.42 -1.73 16 12 C -0.23 -1.95 10.92 29.18 0.32 -1.63 16 13 S 0.21 2.17 22.16 -107.50 -2.38 -0.22 16 14 C 0.51 9.97 5.15 -10.98 -0.06 9.91 16 15 O -0.55 -12.30 14.19 5.56 0.08 -12.22 16 16 N -0.58 -11.93 2.14 -175.26 -0.38 -12.30 16 17 C 0.07 1.22 8.38 59.85 0.50 1.72 16 18 C 0.26 6.37 2.62 -69.08 -0.18 6.19 16 19 H 0.06 1.81 6.91 -51.93 -0.36 1.45 16 20 C -0.15 -3.38 8.96 37.16 0.33 -3.05 16 21 C -0.53 -14.00 8.37 -34.44 -0.29 -14.28 16 22 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 23 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 24 N -0.89 -24.68 11.32 55.43 0.63 -24.05 16 25 Si 0.90 20.93 29.54 -169.99 -5.02 15.90 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.06 0.72 6.81 -51.93 -0.35 0.37 16 30 H 0.07 1.07 6.08 -51.93 -0.32 0.75 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.72 7.63 -51.93 -0.40 0.32 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.16 6.44 -51.93 -0.33 0.83 16 36 H 0.41 6.11 7.05 -40.82 -0.29 5.83 16 37 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 38 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 41 H 0.06 0.85 3.76 -51.93 -0.20 0.65 16 42 H 0.08 1.35 6.44 -51.93 -0.33 1.01 16 43 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 44 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.03 0.68 6.67 -51.93 -0.35 0.33 16 46 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -30.80 377.02 -8.41 -39.21 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.45 Total: 8.23 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -0.41 Total: -0.15 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.01 Total: -47.35 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: 0.16 Total: -21.31 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.38 Total: -0.22 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.80 -8.41 -39.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647651342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.792 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds