Wall clock time and date at job start Tue Mar 31 2020 20:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47561 * 2 1 4 4 C 1.53005 * 109.47093 * 119.99480 * 2 1 3 5 5 H 1.09007 * 109.46836 * 59.01638 * 4 2 1 6 6 N 1.46491 * 109.47468 * 179.01710 * 4 2 1 7 7 C 1.34781 * 120.00308 * 275.00232 * 6 4 2 8 8 O 1.21703 * 119.99755 * 0.02562 * 7 6 4 9 9 C 1.46578 * 120.00166 * 179.97438 * 7 6 4 10 10 C 1.36651 * 125.46135 * 180.02562 * 9 7 6 11 11 C 1.37470 * 113.30028 * 180.02562 * 10 9 7 12 12 C 1.33820 * 115.09784 * 359.97438 * 11 10 9 13 13 S 1.70614 * 110.95569 * 359.73275 * 12 11 10 14 14 C 1.50698 * 109.47150 * 299.01982 * 4 2 1 15 15 O 1.21279 * 120.00289 * 275.10638 * 14 4 2 16 16 N 1.34783 * 120.00102 * 95.10652 * 14 4 2 17 17 C 1.46500 * 119.99724 * 5.27352 * 16 14 4 18 18 C 1.46495 * 119.99919 * 185.27571 * 16 14 4 19 19 H 1.08997 * 109.47359 * 359.97438 * 18 16 14 20 20 C 1.53004 * 109.46960 * 120.00176 * 18 16 14 21 21 C 1.50709 * 109.46849 * 239.99900 * 18 16 14 22 22 H 1.07995 * 119.99815 * 0.02562 * 21 18 16 23 23 C 1.37879 * 119.99689 * 180.02562 * 21 18 16 24 24 N 1.31516 * 120.00248 * 0.02562 * 23 21 18 25 25 Si 1.86796 * 119.99771 * 179.97438 * 23 21 18 26 26 H 1.48507 * 109.47074 * 60.00417 * 25 23 21 27 27 H 1.48506 * 109.47018 * 179.97438 * 25 23 21 28 28 H 1.48491 * 109.47441 * 300.00058 * 25 23 21 29 29 H 1.08998 * 109.47689 * 174.06915 * 1 2 3 30 30 H 1.09007 * 109.47128 * 294.07145 * 1 2 3 31 31 H 1.08999 * 109.47329 * 54.06414 * 1 2 3 32 32 H 1.08999 * 109.47539 * 239.99468 * 2 1 3 33 33 H 1.08992 * 109.47435 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46423 * 299.99818 * 3 2 1 35 35 H 1.09002 * 109.47611 * 59.99058 * 3 2 1 36 36 H 0.97001 * 120.00400 * 94.99791 * 6 4 2 37 37 H 1.08003 * 123.34357 * 359.97438 * 10 9 7 38 38 H 1.07993 * 122.44742 * 180.02562 * 11 10 9 39 39 H 1.08000 * 124.51820 * 180.02562 * 12 11 10 40 40 H 1.09008 * 109.47205 * 84.06315 * 17 16 14 41 41 H 1.08996 * 109.47441 * 324.06463 * 17 16 14 42 42 H 1.09001 * 109.47272 * 204.06014 * 17 16 14 43 43 H 1.09005 * 109.46785 * 179.97438 * 20 18 16 44 44 H 1.08996 * 109.47066 * 299.99975 * 20 18 16 45 45 H 1.09004 * 109.47237 * 60.00291 * 20 18 16 46 46 H 0.96993 * 120.00355 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6622 -1.7437 1.2583 6 7 3.5047 -0.7418 1.2377 7 6 4.1597 -1.7111 0.5684 8 8 3.5343 -2.5690 -0.0266 9 6 5.6253 -1.7313 0.5562 10 6 6.4001 -2.6574 -0.0836 11 6 7.7484 -2.4382 0.0705 12 6 8.0690 -1.3700 0.8100 13 16 6.6682 -0.5634 1.3562 14 6 1.5576 0.0032 2.4796 15 8 2.1823 0.9493 2.9103 16 7 0.4318 -0.4003 3.1013 17 6 -0.2595 -1.6111 2.6516 18 6 -0.1005 0.3720 4.2266 19 1 0.5432 1.2313 4.4145 20 6 -1.5126 0.8557 3.8906 21 6 -0.1469 -0.4985 5.4560 22 1 0.1871 -1.5242 5.4042 23 6 -0.6158 0.0146 6.6467 24 7 -1.0230 1.2636 6.7096 25 14 -0.6740 -1.0646 8.1703 26 1 0.6965 -1.5341 8.4970 27 1 -1.2135 -0.2817 9.3111 28 1 -1.5505 -2.2355 7.9144 29 1 -0.3634 -1.0221 -0.1062 30 1 -0.3634 0.4192 0.9384 31 1 -0.3634 0.6031 -0.8321 32 1 1.8933 -0.5139 -0.8899 33 1 3.1299 1.4424 -0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 4.0032 -0.0578 1.7115 37 1 5.9935 -3.4802 -0.6530 38 1 8.4944 -3.0806 -0.3735 39 1 9.0795 -1.0572 1.0277 40 1 0.2011 -2.4849 3.1127 41 1 -0.1846 -1.6908 1.5672 42 1 -1.3092 -1.5588 2.9406 43 1 -1.9088 1.4299 4.7282 44 1 -1.4791 1.4852 3.0015 45 1 -2.1562 -0.0039 3.7032 46 1 -1.3532 1.6245 7.5472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647651342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:37 Heat of formation + Delta-G solvation = -55.678733 kcal Electronic energy + Delta-G solvation = -28106.329166 eV Core-core repulsion = 24315.183751 eV Total energy + Delta-G solvation = -3791.145415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.86584 -40.40347 -38.48771 -37.44333 -36.89314 -34.88975 -34.42805 -31.58856 -30.94311 -28.32674 -28.24892 -27.43861 -27.26706 -25.66091 -23.58847 -22.71352 -21.40920 -20.59536 -19.80244 -19.46140 -18.49634 -17.92472 -17.75757 -17.02127 -16.81021 -16.67780 -16.36267 -15.93140 -15.53448 -15.20296 -14.87354 -14.74363 -14.51129 -14.21980 -13.97058 -13.82480 -13.69211 -13.50220 -13.43801 -13.25091 -13.14854 -12.95606 -12.84484 -12.72123 -12.62162 -12.33029 -12.18487 -12.15301 -12.01668 -11.91388 -11.87452 -11.31703 -11.17852 -10.72053 -10.51914 -10.27084 -9.86876 -9.58319 -9.36773 -8.15049 -6.31065 -0.51474 0.46803 0.94037 1.36943 1.40811 1.42389 1.48009 1.52026 1.90961 2.09584 2.33144 2.49585 3.12909 3.42334 3.67131 3.77675 3.86746 4.07546 4.13339 4.31529 4.34834 4.39615 4.54597 4.60109 4.61774 4.74321 4.76254 4.87669 4.91491 4.93938 4.97545 5.01224 5.05618 5.07940 5.12110 5.20073 5.31870 5.36825 5.38896 5.46103 5.59923 5.65952 6.01808 6.16205 6.25372 6.71987 6.75457 6.93053 7.22356 7.42327 8.88672 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.003368 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.028967 B = 8312.623438 C = 9381.739397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 C -0.144 4.144 4 C 0.137 3.863 5 H 0.110 0.890 6 N -0.707 5.707 7 C 0.594 3.406 8 O -0.560 6.560 9 C -0.303 4.303 10 C -0.050 4.050 11 C -0.157 4.157 12 C -0.214 4.214 13 S 0.205 5.795 14 C 0.504 3.496 15 O -0.581 6.581 16 N -0.589 5.589 17 C 0.071 3.929 18 C 0.266 3.734 19 H 0.014 0.986 20 C -0.133 4.133 21 C -0.541 4.541 22 H 0.056 0.944 23 C 0.019 3.981 24 N -0.914 5.914 25 Si 0.960 3.040 26 H -0.279 1.279 27 H -0.282 1.282 28 H -0.264 1.264 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.406 0.594 37 H 0.156 0.844 38 H 0.175 0.825 39 H 0.200 0.800 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.025 0.975 45 H 0.047 0.953 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.099 -5.634 -15.859 21.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.110 4.110 3 C -0.201 4.201 4 C 0.029 3.971 5 H 0.128 0.872 6 N -0.359 5.359 7 C 0.382 3.618 8 O -0.441 6.441 9 C -0.423 4.423 10 C -0.084 4.084 11 C -0.187 4.187 12 C -0.352 4.352 13 S 0.472 5.528 14 C 0.291 3.709 15 O -0.462 6.462 16 N -0.318 5.318 17 C -0.071 4.071 18 C 0.164 3.836 19 H 0.032 0.968 20 C -0.191 4.191 21 C -0.579 4.579 22 H 0.074 0.926 23 C -0.181 4.181 24 N -0.553 5.553 25 Si 0.785 3.215 26 H -0.205 1.205 27 H -0.207 1.207 28 H -0.189 1.189 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.243 0.757 37 H 0.174 0.826 38 H 0.193 0.807 39 H 0.218 0.782 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.044 0.956 45 H 0.066 0.934 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.607 -4.302 -14.990 20.053 hybrid contribution 0.351 -1.178 0.656 1.393 sum 12.958 -5.480 -14.334 20.085 Atomic orbital electron populations 1.22041 0.93079 1.03337 1.02736 1.21374 0.97335 0.96719 0.95587 1.21818 1.01012 0.95267 1.02038 1.21049 0.80958 1.01537 0.93577 0.87240 1.45684 1.06404 1.30180 1.53590 1.17219 0.86174 0.80378 0.78005 1.90779 1.68688 1.38955 1.45676 1.24494 0.96092 1.06979 1.14735 1.21065 0.93174 0.97727 0.96449 1.20305 0.95720 0.99982 1.02680 1.25805 1.05004 1.00735 1.03626 1.83443 0.95133 1.26160 1.48082 1.20736 0.81077 0.84344 0.84709 1.90616 1.56820 1.31088 1.67701 1.48155 1.24823 1.26656 1.32201 1.22049 0.98804 0.85868 1.00422 1.18552 0.91546 0.90757 0.82713 0.96763 1.21894 0.97944 0.99785 0.99504 1.21537 1.43226 0.98272 0.94889 0.92620 1.25649 0.94625 0.96256 1.01522 1.69992 1.43108 1.14834 1.27370 0.85589 0.78293 0.78941 0.78672 1.20502 1.20742 1.18911 0.90433 0.93549 0.90119 0.88967 0.92867 0.90571 0.94155 0.75707 0.82645 0.80743 0.78246 0.93118 0.88994 0.90012 0.91337 0.95633 0.93403 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 7.79 71.98 0.56 -3.20 16 2 C -0.09 -2.44 2.90 -10.80 -0.03 -2.48 16 3 C -0.14 -3.99 8.60 71.98 0.62 -3.37 16 4 C 0.14 4.39 1.78 44.25 0.08 4.47 16 5 H 0.11 3.46 5.68 -2.38 -0.01 3.44 16 6 N -0.71 -21.82 4.33 -450.17 -1.95 -23.77 16 7 C 0.59 17.84 7.75 86.42 0.67 18.51 16 8 O -0.56 -19.16 16.50 -4.36 -0.07 -19.23 16 9 C -0.30 -7.39 6.45 24.08 0.16 -7.23 16 10 C -0.05 -0.99 10.01 21.72 0.22 -0.77 16 11 C -0.16 -2.24 10.15 21.08 0.21 -2.02 16 12 C -0.21 -2.92 10.92 66.82 0.73 -2.19 16 13 S 0.20 3.94 22.16 -56.49 -1.25 2.69 16 14 C 0.50 20.38 5.15 87.66 0.45 20.83 16 15 O -0.58 -27.52 14.19 -3.03 -0.04 -27.56 16 16 N -0.59 -24.52 2.14 -826.78 -1.77 -26.30 16 17 C 0.07 2.33 8.38 127.77 1.07 3.40 16 18 C 0.27 13.52 2.62 44.25 0.12 13.64 16 19 H 0.01 0.87 6.91 -2.39 -0.02 0.85 16 20 C -0.13 -6.20 8.96 71.98 0.64 -5.56 16 21 C -0.54 -29.31 8.37 25.60 0.21 -29.09 16 22 H 0.06 2.98 7.65 -2.91 -0.02 2.96 16 23 C 0.02 1.06 5.30 84.65 0.45 1.51 16 24 N -0.91 -52.02 11.32 21.45 0.24 -51.78 16 25 Si 0.96 43.10 29.54 68.60 2.03 45.12 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 28 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 29 H 0.08 1.62 6.81 -2.39 -0.02 1.60 16 30 H 0.05 1.37 6.08 -2.38 -0.01 1.35 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.05 1.44 7.63 -2.39 -0.02 1.42 16 34 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.04 1.36 6.44 -2.39 -0.02 1.35 16 36 H 0.41 12.62 7.05 -92.71 -0.65 11.97 16 37 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.09 2.42 3.76 -2.39 -0.01 2.41 16 42 H 0.08 2.66 6.44 -2.39 -0.02 2.64 16 43 H 0.07 3.58 6.07 -2.38 -0.01 3.57 16 44 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.05 2.03 6.67 -2.39 -0.02 2.01 16 46 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -68.98 377.02 3.70 -65.28 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.36 Total: 29.11 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 6.16 Total: 6.44 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -3.48 Total: -101.85 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -0.11 Total: -46.80 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -1.25 Total: 2.69 kcal Total: -68.98 3.70 -65.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647651342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.599 kcal (2) G-P(sol) polarization free energy of solvation -68.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds