Wall clock time and date at job start Tue Mar 31 2020 20:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46999 * 2 1 4 4 C 1.52999 * 109.46886 * 119.99738 * 2 1 3 5 5 H 1.09000 * 109.47061 * 54.19900 * 4 2 1 6 6 N 1.46505 * 109.47355 * 294.19989 * 4 2 1 7 7 C 1.34776 * 120.00002 * 84.99419 * 6 4 2 8 8 O 1.21701 * 119.99915 * 0.02562 * 7 6 4 9 9 C 1.46578 * 119.99851 * 180.02562 * 7 6 4 10 10 C 1.36652 * 125.45519 * 180.02562 * 9 7 6 11 11 C 1.37471 * 113.29719 * 179.97438 * 10 9 7 12 12 C 1.33825 * 115.10020 * 359.97438 * 11 10 9 13 13 S 1.70614 * 110.95215 * 359.76022 * 12 11 10 14 14 C 1.50703 * 109.47175 * 174.20229 * 4 2 1 15 15 O 1.21280 * 120.00056 * 103.67470 * 14 4 2 16 16 N 1.34769 * 119.99648 * 283.68108 * 14 4 2 17 17 C 1.46503 * 119.99843 * 183.76642 * 16 14 4 18 18 C 1.46504 * 120.00563 * 3.76603 * 16 14 4 19 19 H 1.09005 * 109.46431 * 4.22974 * 18 16 14 20 20 C 1.52996 * 109.47205 * 244.23427 * 18 16 14 21 21 C 1.50695 * 109.47288 * 124.22849 * 18 16 14 22 22 H 1.07995 * 120.00348 * 0.02562 * 21 18 16 23 23 C 1.37877 * 119.99837 * 180.02562 * 21 18 16 24 24 N 1.31514 * 120.00067 * 0.02562 * 23 21 18 25 25 Si 1.86796 * 120.00112 * 180.02562 * 23 21 18 26 26 H 1.48501 * 109.47139 * 59.99757 * 25 23 21 27 27 H 1.48502 * 109.47432 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47107 * 300.00281 * 25 23 21 29 29 H 1.09000 * 109.47073 * 60.00183 * 1 2 3 30 30 H 1.09000 * 109.47206 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47339 * 300.00117 * 1 2 3 32 32 H 1.08993 * 109.47468 * 239.99609 * 2 1 3 33 33 H 1.08995 * 109.47016 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47059 * 299.99825 * 3 2 1 35 35 H 1.09001 * 109.47171 * 59.99780 * 3 2 1 36 36 H 0.97002 * 119.99994 * 265.00128 * 6 4 2 37 37 H 1.07997 * 123.35409 * 359.94283 * 10 9 7 38 38 H 1.08001 * 122.45192 * 180.02562 * 11 10 9 39 39 H 1.07999 * 124.52253 * 180.02562 * 12 11 10 40 40 H 1.08997 * 109.47226 * 272.17964 * 17 16 14 41 41 H 1.08994 * 109.47404 * 32.18299 * 17 16 14 42 42 H 1.09007 * 109.47052 * 152.18259 * 17 16 14 43 43 H 1.09004 * 109.47200 * 179.97438 * 20 18 16 44 44 H 1.08997 * 109.47467 * 59.99341 * 20 18 16 45 45 H 1.09005 * 109.47057 * 299.99164 * 20 18 16 46 46 H 0.97009 * 120.00058 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5943 -1.7145 1.3028 6 7 1.6689 0.0453 2.4414 7 6 0.4532 -0.1218 2.9987 8 8 -0.3361 -0.9099 2.5118 9 6 0.0818 0.6455 4.1910 10 6 -1.1154 0.5643 4.8448 11 6 -1.1966 1.3965 5.9360 12 6 -0.1047 2.1340 6.1699 13 16 1.1084 1.8117 5.0142 14 6 3.5402 -0.8467 1.1797 15 8 4.2414 -0.1176 1.8486 16 7 4.1024 -1.7692 0.3740 17 6 5.5565 -1.9475 0.3677 18 6 3.2596 -2.5937 -0.4957 19 1 2.2225 -2.2693 -0.4100 20 6 3.3719 -4.0600 -0.0735 21 6 3.7159 -2.4459 -1.9243 22 1 4.5504 -1.8026 -2.1608 23 6 3.0679 -3.1321 -2.9294 24 7 2.0513 -3.9151 -2.6414 25 14 3.6338 -2.9495 -4.7002 26 1 5.0465 -3.3923 -4.8165 27 1 2.7794 -3.7851 -5.5816 28 1 3.5259 -1.5262 -5.1100 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.2982 0.6732 2.8296 37 1 -1.9181 -0.0883 4.5349 38 1 -2.0768 1.4504 6.5595 39 1 -0.0032 2.8362 6.9842 40 1 6.0036 -1.2621 -0.3523 41 1 5.9524 -1.7394 1.3616 42 1 5.7955 -2.9739 0.0890 43 1 2.7445 -4.6734 -0.7202 44 1 3.0419 -4.1669 0.9598 45 1 4.4090 -4.3844 -0.1591 46 1 1.5956 -4.3982 -3.3485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647651343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:41 Heat of formation + Delta-G solvation = -38.483738 kcal Electronic energy + Delta-G solvation = -28529.114798 eV Core-core repulsion = 24738.715014 eV Total energy + Delta-G solvation = -3790.399784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.44547 -38.99412 -37.57593 -35.75732 -35.57742 -32.96099 -32.67206 -30.01969 -29.25069 -28.18324 -26.71630 -25.69692 -25.33952 -24.45507 -21.68250 -21.56257 -19.75592 -19.56429 -18.85035 -18.19254 -16.84052 -16.34389 -15.94547 -15.75877 -15.49409 -15.27658 -14.67915 -14.49269 -14.20298 -13.92124 -13.55401 -13.14662 -13.08220 -12.89883 -12.85389 -12.71226 -12.42302 -12.10232 -11.92443 -11.65319 -11.61253 -11.40919 -11.12881 -11.09452 -11.01744 -10.95196 -10.76630 -10.62963 -10.45250 -10.24788 -10.10528 -9.89413 -9.48286 -9.10536 -9.04299 -8.79417 -8.71682 -8.56261 -7.74704 -6.19951 -4.29321 0.39029 1.32684 1.73604 2.28173 3.04679 3.20186 3.22360 3.28134 3.28333 3.31976 3.95366 4.29987 4.75000 4.86892 5.08176 5.11285 5.14065 5.23266 5.30967 5.38872 5.61898 5.77524 5.91218 6.00380 6.02397 6.06821 6.15523 6.15872 6.19073 6.25967 6.34448 6.39670 6.45246 6.52700 6.56215 6.70623 6.80401 6.84263 6.93479 7.10487 7.32647 7.60421 7.63005 7.80777 8.05288 8.26397 8.35335 8.66571 8.84900 9.38943 10.84657 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.003339 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.033454 B = 8382.490779 C = 8820.537552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 C -0.142 4.142 4 C 0.138 3.862 5 H 0.114 0.886 6 N -0.703 5.703 7 C 0.588 3.412 8 O -0.520 6.520 9 C -0.257 4.257 10 C -0.061 4.061 11 C -0.150 4.150 12 C -0.237 4.237 13 S 0.206 5.794 14 C 0.509 3.491 15 O -0.573 6.573 16 N -0.583 5.583 17 C 0.099 3.901 18 C 0.247 3.753 19 H 0.061 0.939 20 C -0.153 4.153 21 C -0.531 4.531 22 H 0.062 0.938 23 C 0.070 3.930 24 N -0.884 5.884 25 Si 0.898 3.102 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.404 0.596 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.167 0.833 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.012 0.988 45 H 0.034 0.966 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 9.826 13.245 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 C -0.199 4.199 4 C 0.030 3.970 5 H 0.132 0.868 6 N -0.356 5.356 7 C 0.373 3.627 8 O -0.397 6.397 9 C -0.378 4.378 10 C -0.094 4.094 11 C -0.181 4.181 12 C -0.375 4.375 13 S 0.473 5.527 14 C 0.295 3.705 15 O -0.455 6.455 16 N -0.312 5.312 17 C -0.044 4.044 18 C 0.146 3.854 19 H 0.078 0.922 20 C -0.212 4.212 21 C -0.570 4.570 22 H 0.081 0.919 23 C -0.134 4.134 24 N -0.521 5.521 25 Si 0.725 3.275 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.241 0.759 37 H 0.172 0.828 38 H 0.162 0.838 39 H 0.185 0.815 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.115 0.885 44 H 0.032 0.968 45 H 0.053 0.947 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.363 10.014 12.881 16.486 hybrid contribution -0.888 -0.212 -0.505 1.044 sum -3.251 9.802 12.376 16.118 Atomic orbital electron populations 1.21818 0.93917 1.02693 1.00625 1.21619 0.97024 0.96621 0.97459 1.21779 1.01198 0.95842 1.01111 1.20929 0.92856 0.97601 0.85573 0.86823 1.45628 1.15885 1.44408 1.29671 1.16838 0.81977 0.81984 0.81876 1.90866 1.50261 1.36173 1.62434 1.24727 1.00631 1.08149 1.04265 1.20805 0.96567 0.98392 0.93641 1.20042 0.99931 0.98599 0.99534 1.25343 0.99181 1.06938 1.06066 1.83264 1.15739 1.34512 1.19217 1.20306 0.89645 0.80629 0.79876 1.90575 1.63944 1.44579 1.46391 1.48221 1.07837 1.35747 1.39423 1.21375 0.80662 1.01761 1.00627 1.19267 0.90820 0.87099 0.88200 0.92179 1.22157 1.00963 1.00044 0.98030 1.21210 1.17140 1.28152 0.90482 0.91949 1.24868 0.94674 0.94664 0.99188 1.69848 1.20679 1.28294 1.33276 0.86559 0.78678 0.78277 0.83965 1.20199 1.21140 1.20122 0.93372 0.91724 0.93062 0.87192 0.92532 0.92632 0.93276 0.75950 0.82810 0.83842 0.81529 0.93386 0.92507 0.90950 0.88515 0.96849 0.94728 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 7.81 37.16 0.29 -2.02 16 2 C -0.11 -1.94 2.30 -90.61 -0.21 -2.15 16 3 C -0.14 -2.29 8.79 37.16 0.33 -1.97 16 4 C 0.14 2.55 1.49 -69.08 -0.10 2.45 16 5 H 0.11 2.30 6.57 -51.93 -0.34 1.96 16 6 N -0.70 -11.45 3.97 -56.27 -0.22 -11.67 16 7 C 0.59 9.48 6.38 -12.90 -0.08 9.40 16 8 O -0.52 -9.74 13.98 5.19 0.07 -9.67 16 9 C -0.26 -3.38 6.45 -36.79 -0.24 -3.61 16 10 C -0.06 -0.70 10.01 -40.43 -0.40 -1.11 16 11 C -0.15 -1.36 10.15 -41.41 -0.42 -1.78 16 12 C -0.24 -2.03 10.92 29.18 0.32 -1.71 16 13 S 0.21 2.11 22.16 -107.50 -2.38 -0.27 16 14 C 0.51 10.17 6.01 -10.99 -0.07 10.11 16 15 O -0.57 -11.91 15.44 5.56 0.09 -11.83 16 16 N -0.58 -12.04 2.75 -175.26 -0.48 -12.52 16 17 C 0.10 1.84 9.42 59.85 0.56 2.40 16 18 C 0.25 5.58 1.75 -69.08 -0.12 5.46 16 19 H 0.06 1.43 4.44 -51.93 -0.23 1.20 16 20 C -0.15 -3.42 9.02 37.16 0.34 -3.08 16 21 C -0.53 -13.10 8.24 -34.44 -0.28 -13.38 16 22 H 0.06 1.55 7.46 -52.49 -0.39 1.16 16 23 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 24 N -0.88 -22.95 11.32 55.43 0.63 -22.32 16 25 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.22 7.89 -51.93 -0.41 0.81 16 31 H 0.05 0.87 5.63 -51.93 -0.29 0.58 16 32 H 0.11 2.27 6.22 -51.93 -0.32 1.95 16 33 H 0.06 0.98 7.33 -51.93 -0.38 0.60 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.73 7.46 -51.93 -0.39 0.34 16 36 H 0.40 6.21 6.83 -40.82 -0.28 5.94 16 37 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.05 0.88 8.11 -51.93 -0.42 0.46 16 41 H 0.06 1.00 7.54 -51.93 -0.39 0.60 16 42 H 0.07 1.30 6.66 -51.92 -0.35 0.95 16 43 H 0.10 2.36 6.07 -51.93 -0.32 2.04 16 44 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.03 0.73 6.84 -51.93 -0.36 0.38 16 46 H 0.27 6.68 8.31 -40.82 -0.34 6.35 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -27.80 376.48 -8.37 -36.17 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.54 Total: 10.88 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -0.19 Total: 0.67 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.08 Total: -46.51 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: 0.16 Total: -21.50 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.38 Total: -0.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.80 -8.37 -36.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647651343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.315 kcal (2) G-P(sol) polarization free energy of solvation -27.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds