Wall clock time and date at job start Tue Mar 31 2020 20:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46999 * 2 1 4 4 C 1.52999 * 109.46886 * 119.99738 * 2 1 3 5 5 H 1.09000 * 109.47061 * 54.19900 * 4 2 1 6 6 N 1.46505 * 109.47355 * 294.19989 * 4 2 1 7 7 C 1.34776 * 120.00002 * 84.99419 * 6 4 2 8 8 O 1.21701 * 119.99915 * 0.02562 * 7 6 4 9 9 C 1.46578 * 119.99851 * 180.02562 * 7 6 4 10 10 C 1.36652 * 125.45519 * 180.02562 * 9 7 6 11 11 C 1.37471 * 113.29719 * 179.97438 * 10 9 7 12 12 C 1.33825 * 115.10020 * 359.97438 * 11 10 9 13 13 S 1.70614 * 110.95215 * 359.76022 * 12 11 10 14 14 C 1.50703 * 109.47175 * 174.20229 * 4 2 1 15 15 O 1.21280 * 120.00056 * 103.67470 * 14 4 2 16 16 N 1.34769 * 119.99648 * 283.68108 * 14 4 2 17 17 C 1.46503 * 119.99843 * 183.76642 * 16 14 4 18 18 C 1.46504 * 120.00563 * 3.76603 * 16 14 4 19 19 H 1.09005 * 109.46431 * 4.22974 * 18 16 14 20 20 C 1.52996 * 109.47205 * 244.23427 * 18 16 14 21 21 C 1.50695 * 109.47288 * 124.22849 * 18 16 14 22 22 H 1.07995 * 120.00348 * 0.02562 * 21 18 16 23 23 C 1.37877 * 119.99837 * 180.02562 * 21 18 16 24 24 N 1.31514 * 120.00067 * 0.02562 * 23 21 18 25 25 Si 1.86796 * 120.00112 * 180.02562 * 23 21 18 26 26 H 1.48501 * 109.47139 * 59.99757 * 25 23 21 27 27 H 1.48502 * 109.47432 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47107 * 300.00281 * 25 23 21 29 29 H 1.09000 * 109.47073 * 60.00183 * 1 2 3 30 30 H 1.09000 * 109.47206 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47339 * 300.00117 * 1 2 3 32 32 H 1.08993 * 109.47468 * 239.99609 * 2 1 3 33 33 H 1.08995 * 109.47016 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47059 * 299.99825 * 3 2 1 35 35 H 1.09001 * 109.47171 * 59.99780 * 3 2 1 36 36 H 0.97002 * 119.99994 * 265.00128 * 6 4 2 37 37 H 1.07997 * 123.35409 * 359.94283 * 10 9 7 38 38 H 1.08001 * 122.45192 * 180.02562 * 11 10 9 39 39 H 1.07999 * 124.52253 * 180.02562 * 12 11 10 40 40 H 1.08997 * 109.47226 * 272.17964 * 17 16 14 41 41 H 1.08994 * 109.47404 * 32.18299 * 17 16 14 42 42 H 1.09007 * 109.47052 * 152.18259 * 17 16 14 43 43 H 1.09004 * 109.47200 * 179.97438 * 20 18 16 44 44 H 1.08997 * 109.47467 * 59.99341 * 20 18 16 45 45 H 1.09005 * 109.47057 * 299.99164 * 20 18 16 46 46 H 0.97009 * 120.00058 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5943 -1.7145 1.3028 6 7 1.6689 0.0453 2.4414 7 6 0.4532 -0.1218 2.9987 8 8 -0.3361 -0.9099 2.5118 9 6 0.0818 0.6455 4.1910 10 6 -1.1154 0.5643 4.8448 11 6 -1.1966 1.3965 5.9360 12 6 -0.1047 2.1340 6.1699 13 16 1.1084 1.8117 5.0142 14 6 3.5402 -0.8467 1.1797 15 8 4.2414 -0.1176 1.8486 16 7 4.1024 -1.7692 0.3740 17 6 5.5565 -1.9475 0.3677 18 6 3.2596 -2.5937 -0.4957 19 1 2.2225 -2.2693 -0.4100 20 6 3.3719 -4.0600 -0.0735 21 6 3.7159 -2.4459 -1.9243 22 1 4.5504 -1.8026 -2.1608 23 6 3.0679 -3.1321 -2.9294 24 7 2.0513 -3.9151 -2.6414 25 14 3.6338 -2.9495 -4.7002 26 1 5.0465 -3.3923 -4.8165 27 1 2.7794 -3.7851 -5.5816 28 1 3.5259 -1.5262 -5.1100 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.2982 0.6732 2.8296 37 1 -1.9181 -0.0883 4.5349 38 1 -2.0768 1.4504 6.5595 39 1 -0.0032 2.8362 6.9842 40 1 6.0036 -1.2621 -0.3523 41 1 5.9524 -1.7394 1.3616 42 1 5.7955 -2.9739 0.0890 43 1 2.7445 -4.6734 -0.7202 44 1 3.0419 -4.1669 0.9598 45 1 4.4090 -4.3844 -0.1591 46 1 1.5956 -4.3982 -3.3485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647651343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:40 Heat of formation + Delta-G solvation = -53.641350 kcal Electronic energy + Delta-G solvation = -28529.772081 eV Core-core repulsion = 24738.715014 eV Total energy + Delta-G solvation = -3791.057067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.89736 -40.38131 -38.49686 -37.46226 -37.02158 -34.60334 -34.25354 -31.08577 -30.98132 -29.59029 -28.10414 -27.28398 -26.98828 -25.51877 -23.43042 -22.72229 -21.17756 -20.76643 -19.91303 -19.57478 -18.61330 -17.73981 -17.43559 -17.10716 -16.72928 -16.60922 -16.34667 -16.00429 -15.60910 -15.17588 -14.80546 -14.71582 -14.52427 -14.45555 -13.85822 -13.67138 -13.66397 -13.48720 -13.35467 -13.21147 -13.05691 -12.97586 -12.87718 -12.75215 -12.50911 -12.40227 -12.24978 -12.11454 -11.98422 -11.89574 -11.68112 -11.26300 -11.19602 -10.78982 -10.48417 -10.23426 -9.84091 -9.53917 -9.44514 -8.12854 -6.27673 -0.48170 0.49649 0.96365 1.41754 1.45369 1.46639 1.51794 1.55062 1.79169 2.14708 2.37835 2.50416 3.16347 3.44263 3.71966 3.81398 3.92168 4.15219 4.17847 4.37082 4.43489 4.47070 4.57283 4.63577 4.66994 4.72191 4.76470 4.88691 4.90981 4.92100 4.96429 5.03576 5.04160 5.07568 5.17590 5.23326 5.31953 5.38253 5.38674 5.41136 5.54764 5.71907 5.93042 6.17499 6.35399 6.58516 6.79182 7.03197 7.15146 7.43942 8.90511 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.003339 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.033454 B = 8382.490779 C = 8820.537552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C -0.133 4.133 4 C 0.146 3.854 5 H 0.090 0.910 6 N -0.699 5.699 7 C 0.588 3.412 8 O -0.556 6.556 9 C -0.301 4.301 10 C -0.054 4.054 11 C -0.158 4.158 12 C -0.214 4.214 13 S 0.218 5.782 14 C 0.509 3.491 15 O -0.579 6.579 16 N -0.589 5.589 17 C 0.098 3.902 18 C 0.254 3.746 19 H 0.046 0.954 20 C -0.144 4.144 21 C -0.537 4.537 22 H 0.058 0.942 23 C 0.030 3.970 24 N -0.907 5.907 25 Si 0.952 3.048 26 H -0.272 1.272 27 H -0.286 1.286 28 H -0.275 1.275 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.409 0.591 37 H 0.150 0.850 38 H 0.173 0.827 39 H 0.203 0.797 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.021 0.979 45 H 0.040 0.960 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.399 11.768 14.685 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.123 4.123 3 C -0.191 4.191 4 C 0.037 3.963 5 H 0.108 0.892 6 N -0.352 5.352 7 C 0.376 3.624 8 O -0.437 6.437 9 C -0.421 4.421 10 C -0.089 4.089 11 C -0.188 4.188 12 C -0.352 4.352 13 S 0.486 5.514 14 C 0.296 3.704 15 O -0.461 6.461 16 N -0.318 5.318 17 C -0.045 4.045 18 C 0.152 3.848 19 H 0.063 0.937 20 C -0.203 4.203 21 C -0.576 4.576 22 H 0.076 0.924 23 C -0.171 4.171 24 N -0.545 5.545 25 Si 0.778 3.222 26 H -0.197 1.197 27 H -0.211 1.211 28 H -0.200 1.200 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.247 0.753 37 H 0.167 0.833 38 H 0.190 0.810 39 H 0.220 0.780 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.040 0.960 45 H 0.060 0.940 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.199 11.976 14.341 18.813 hybrid contribution -0.948 -0.768 -0.828 1.475 sum -3.147 11.209 13.513 17.836 Atomic orbital electron populations 1.21695 0.93396 1.01426 1.01407 1.21513 0.97330 0.97510 0.95949 1.21706 1.00246 0.94577 1.02535 1.20671 0.91706 0.97000 0.86886 0.89177 1.45540 1.16316 1.44286 1.29060 1.17269 0.81191 0.81570 0.82365 1.90839 1.51104 1.37899 1.63820 1.24488 1.02482 1.10556 1.04565 1.21042 0.95784 0.98130 0.93926 1.20267 1.01331 0.98094 0.99086 1.25810 0.97782 1.06067 1.05535 1.83213 1.15713 1.33232 1.19291 1.20488 0.90171 0.80229 0.79466 1.90558 1.64296 1.44695 1.46567 1.48217 1.08580 1.35723 1.39323 1.21475 0.79453 1.02157 1.01380 1.19020 0.90407 0.87455 0.87883 0.93674 1.22014 1.00861 0.99455 0.97973 1.21386 1.16835 1.27805 0.91548 0.92416 1.25489 0.94771 0.94521 1.02321 1.69960 1.21515 1.28972 1.34060 0.85704 0.78319 0.78045 0.80138 1.19719 1.21118 1.20017 0.91974 0.94039 0.92689 0.90072 0.93794 0.91165 0.91882 0.75305 0.83265 0.80960 0.78045 0.93203 0.91373 0.90469 0.90640 0.95993 0.94047 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.33 7.81 71.98 0.56 -3.77 16 2 C -0.10 -3.80 2.30 -10.79 -0.02 -3.83 16 3 C -0.13 -4.24 8.79 71.98 0.63 -3.60 16 4 C 0.15 5.55 1.49 44.24 0.07 5.61 16 5 H 0.09 3.87 6.57 -2.39 -0.02 3.85 16 6 N -0.70 -23.03 3.97 -450.16 -1.79 -24.82 16 7 C 0.59 19.32 6.38 86.42 0.55 19.87 16 8 O -0.56 -21.74 13.98 -4.35 -0.06 -21.80 16 9 C -0.30 -7.71 6.45 24.08 0.16 -7.55 16 10 C -0.05 -1.18 10.01 21.72 0.22 -0.97 16 11 C -0.16 -2.38 10.15 21.08 0.21 -2.16 16 12 C -0.21 -2.85 10.92 66.82 0.73 -2.12 16 13 S 0.22 4.01 22.16 -56.49 -1.25 2.76 16 14 C 0.51 20.55 6.01 87.66 0.53 21.08 16 15 O -0.58 -23.80 15.44 -3.03 -0.05 -23.85 16 16 N -0.59 -24.54 2.75 -826.80 -2.28 -26.82 16 17 C 0.10 3.59 9.42 127.77 1.20 4.79 16 18 C 0.25 11.75 1.75 44.24 0.08 11.82 16 19 H 0.05 2.25 4.44 -2.38 -0.01 2.24 16 20 C -0.14 -6.55 9.02 71.98 0.65 -5.90 16 21 C -0.54 -26.76 8.24 25.60 0.21 -26.55 16 22 H 0.06 2.88 7.46 -2.91 -0.02 2.86 16 23 C 0.03 1.52 5.30 84.65 0.45 1.97 16 24 N -0.91 -48.01 11.32 21.45 0.24 -47.76 16 25 Si 0.95 40.85 29.54 68.60 2.03 42.88 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 27 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.04 1.64 7.89 -2.39 -0.02 1.62 16 31 H 0.05 1.90 5.63 -2.39 -0.01 1.88 16 32 H 0.08 3.48 6.22 -2.39 -0.01 3.47 16 33 H 0.04 1.50 7.33 -2.39 -0.02 1.48 16 34 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 1.81 7.46 -2.39 -0.02 1.79 16 36 H 0.41 12.49 6.83 -92.71 -0.63 11.86 16 37 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 38 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.05 1.79 8.11 -2.39 -0.02 1.77 16 41 H 0.07 2.33 7.54 -2.39 -0.02 2.31 16 42 H 0.08 2.72 6.66 -2.38 -0.02 2.71 16 43 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 44 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.04 1.77 6.84 -2.38 -0.02 1.75 16 46 H 0.27 13.55 8.31 -92.70 -0.77 12.78 16 Total: -1.00 -60.24 376.48 3.44 -56.80 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.37 Total: 33.90 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 6.22 Total: 8.70 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -3.82 Total: -99.40 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -0.11 Total: -45.64 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.25 Total: 2.76 kcal Total: -60.24 3.44 -56.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647651343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.161 kcal (2) G-P(sol) polarization free energy of solvation -60.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds