Wall clock time and date at job start Tue Mar 31 2020 20:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35786 * 117.00275 * 2 1 4 4 C 1.38012 * 123.47052 * 0.02877 * 3 2 1 5 5 C 1.33618 * 115.08886 * 179.97438 * 4 3 2 6 6 S 1.70577 * 111.14263 * 359.72420 * 5 4 3 7 7 C 1.37267 * 123.47198 * 179.97438 * 3 2 1 8 8 C 1.41731 * 125.47582 * 0.03059 * 7 3 2 9 9 O 1.21770 * 120.00259 * 51.05369 * 8 7 3 10 10 N 1.34773 * 119.99889 * 231.05598 * 8 7 3 11 11 C 1.46935 * 120.62847 * 355.92655 * 10 8 7 12 12 C 1.53191 * 108.77412 * 126.37368 * 11 10 8 13 13 C 1.53035 * 109.31815 * 54.62912 * 12 11 10 14 14 C 1.53035 * 109.52781 * 298.64304 * 13 12 11 15 15 H 1.09005 * 109.49975 * 301.40752 * 14 13 12 16 16 C 1.53001 * 109.49836 * 181.30419 * 14 13 12 17 17 H 1.08994 * 109.47343 * 300.00033 * 16 14 13 18 18 C 1.53006 * 109.46769 * 60.00452 * 16 14 13 19 19 N 1.46507 * 109.47324 * 179.97438 * 16 14 13 20 20 C 1.36935 * 119.99837 * 155.00271 * 19 16 14 21 21 H 1.07998 * 120.00076 * 0.02562 * 20 19 16 22 22 C 1.38816 * 119.99409 * 180.02562 * 20 19 16 23 23 N 1.31622 * 119.99459 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00381 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47278 * 89.99790 * 24 22 20 26 26 H 1.48500 * 109.46945 * 209.99838 * 24 22 20 27 27 H 1.48501 * 109.46972 * 329.99585 * 24 22 20 28 28 C 1.46924 * 120.63156 * 175.90050 * 10 8 7 29 29 H 1.08994 * 109.46953 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46942 * 299.99908 * 1 2 3 31 31 H 1.09002 * 109.47004 * 59.99696 * 1 2 3 32 32 H 1.08008 * 122.45832 * 359.97438 * 4 3 2 33 33 H 1.07996 * 124.42601 * 179.97438 * 5 4 3 34 34 H 1.08992 * 109.58822 * 6.58101 * 11 10 8 35 35 H 1.09003 * 109.57939 * 246.15367 * 11 10 8 36 36 H 1.09002 * 109.49291 * 294.67600 * 12 11 10 37 37 H 1.08993 * 109.49519 * 174.58649 * 12 11 10 38 38 H 1.08999 * 109.46007 * 58.65402 * 13 12 11 39 39 H 1.08999 * 109.46289 * 178.62738 * 13 12 11 40 40 H 1.09001 * 109.46636 * 299.99566 * 18 16 14 41 41 H 1.09001 * 109.47149 * 59.99752 * 18 16 14 42 42 H 1.08998 * 109.47025 * 179.97438 * 18 16 14 43 43 H 0.96997 * 119.99689 * 335.00656 * 19 16 14 44 44 H 0.96996 * 120.00070 * 180.02562 * 23 22 20 45 45 H 1.08998 * 109.58706 * 353.41695 * 28 10 8 46 46 H 1.09003 * 109.58567 * 113.84268 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3654 2.4107 0.0006 5 6 2.1391 3.5001 0.0010 6 16 3.7924 3.0804 0.0084 7 6 3.4094 1.3645 0.0005 8 6 4.3568 0.3103 0.0005 9 8 4.2710 -0.5854 -0.8200 10 7 5.3526 0.2992 0.9086 11 6 5.5222 1.4169 1.8472 12 6 5.5562 0.8613 3.2744 13 6 6.6413 -0.2132 3.3738 14 6 6.3139 -1.3610 2.4161 15 1 5.3383 -1.7774 2.6673 16 6 7.3818 -2.4496 2.5396 17 1 8.3566 -2.0327 2.2867 18 6 7.4094 -2.9764 3.9758 19 7 7.0675 -3.5484 1.6230 20 6 8.0667 -4.3651 1.1650 21 1 9.0864 -4.1995 1.4798 22 6 7.7688 -5.4059 0.2961 23 7 8.7292 -6.1912 -0.1437 24 14 6.0052 -5.6920 -0.2489 25 1 5.7365 -4.9135 -1.4846 26 1 5.7991 -7.1374 -0.5198 27 1 5.0779 -5.2524 0.8245 28 6 6.2887 -0.8310 0.9792 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2867 2.4660 0.0007 33 1 1.7664 4.5137 0.0011 34 1 4.6875 2.1101 1.7447 35 1 6.4578 1.9341 1.6341 36 1 4.5878 0.4240 3.5177 37 1 5.7775 1.6677 3.9735 38 1 7.6057 0.2189 3.1064 39 1 6.6841 -0.5929 4.3946 40 1 7.6431 -2.1590 4.6581 41 1 6.4345 -3.3933 4.2287 42 1 8.1699 -3.7522 4.0637 43 1 6.1516 -3.6974 1.3405 44 1 8.5212 -6.9183 -0.7512 45 1 5.9596 -1.6208 0.3040 46 1 7.2868 -0.4970 0.6954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667353868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:24 Heat of formation + Delta-G solvation = -16.812248 kcal Electronic energy + Delta-G solvation = -28099.896671 eV Core-core repulsion = 24310.436633 eV Total energy + Delta-G solvation = -3789.460037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.59984 -39.62005 -37.71919 -36.20147 -35.50502 -32.95564 -31.75106 -30.88874 -29.91000 -28.53592 -27.28806 -25.63707 -24.80741 -23.62071 -22.85158 -21.45646 -20.29810 -19.78825 -19.56593 -18.16921 -17.41164 -17.05170 -16.64560 -16.04463 -15.64188 -15.11219 -14.92782 -14.75743 -14.44429 -14.16261 -14.02673 -13.87243 -13.32537 -13.17866 -13.02405 -12.91190 -12.76226 -12.47670 -12.34836 -12.18835 -11.85267 -11.53405 -11.42265 -11.32898 -11.09767 -10.99289 -10.87756 -10.71811 -10.57370 -10.28185 -10.01939 -9.90752 -9.70272 -9.46586 -8.96447 -8.83345 -8.44359 -8.28494 -7.16310 -5.67240 -3.01999 0.34624 1.06835 1.48821 2.15866 2.89575 3.20238 3.42302 3.51518 3.55656 3.61496 4.31592 4.65434 4.71616 4.75057 4.79656 4.87440 4.87775 4.93337 5.02778 5.19668 5.21928 5.25492 5.33333 5.45119 5.47292 5.57933 5.67526 5.69804 5.78298 5.84704 5.90892 5.99121 6.11232 6.13287 6.20858 6.38823 6.42127 6.50351 6.61060 6.74047 6.89624 6.98772 7.08198 7.54106 8.08906 8.33344 8.52171 9.31091 10.04496 10.24043 11.51140 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.003787 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.517172 B = 7391.443457 C = 8616.110246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.285 6.285 3 C 0.171 3.829 4 C -0.204 4.204 5 C -0.217 4.217 6 S 0.242 5.758 7 C -0.312 4.312 8 C 0.594 3.406 9 O -0.517 6.517 10 N -0.607 5.607 11 C 0.096 3.904 12 C -0.131 4.131 13 C -0.114 4.114 14 C -0.107 4.107 15 H 0.069 0.931 16 C 0.185 3.815 17 H 0.056 0.944 18 C -0.165 4.165 19 N -0.749 5.749 20 C -0.240 4.240 21 H 0.090 0.910 22 C 0.007 3.993 23 N -0.936 5.936 24 Si 0.879 3.121 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.278 1.278 28 C 0.124 3.876 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.148 0.852 33 H 0.173 0.827 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.361 0.639 44 H 0.258 0.742 45 H 0.100 0.900 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.565 25.486 6.019 30.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.197 6.197 3 C 0.111 3.889 4 C -0.238 4.238 5 C -0.355 4.355 6 S 0.507 5.493 7 C -0.432 4.432 8 C 0.381 3.619 9 O -0.394 6.394 10 N -0.341 5.341 11 C -0.028 4.028 12 C -0.170 4.170 13 C -0.152 4.152 14 C -0.127 4.127 15 H 0.087 0.913 16 C 0.076 3.924 17 H 0.074 0.926 18 C -0.225 4.225 19 N -0.392 5.392 20 C -0.370 4.370 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.584 5.584 24 Si 0.709 3.291 25 H -0.207 1.207 26 H -0.219 1.219 27 H -0.204 1.204 28 C 0.002 3.998 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.166 0.834 33 H 0.190 0.810 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.194 0.806 44 H 0.068 0.932 45 H 0.118 0.882 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.971 25.514 5.497 29.604 hybrid contribution -3.045 -0.923 -0.375 3.203 sum -17.015 24.591 5.122 30.339 Atomic orbital electron populations 1.23157 0.77998 1.04519 1.01212 1.86243 1.21309 1.24447 1.87666 1.18143 0.89976 0.85506 0.95236 1.20006 1.01985 0.90863 1.10918 1.25088 0.99755 1.03643 1.06967 1.83147 1.03076 0.94736 1.68300 1.22626 0.95555 0.98782 1.26237 1.15624 0.80135 0.84749 0.81386 1.90898 1.73074 1.37838 1.37555 1.48116 1.30424 1.21622 1.33943 1.22026 1.02251 0.88955 0.89532 1.21892 1.00306 0.99120 0.95635 1.21614 0.98230 0.95239 1.00083 1.21813 1.00714 0.95897 0.94297 0.91276 1.20149 0.95555 0.87072 0.89667 0.92559 1.22450 1.01515 1.00364 0.98132 1.42841 1.06944 1.34392 1.55022 1.19041 0.89896 1.06582 1.21467 0.89221 1.24621 0.96664 0.97938 0.99670 1.69702 1.30760 1.20590 1.37320 0.86627 0.86188 0.77047 0.79189 1.20712 1.21917 1.20398 1.21687 0.92025 0.88231 0.97850 0.87819 0.92599 0.92509 0.83398 0.80977 0.89921 0.91045 0.91669 0.90855 0.91587 0.91047 0.93952 0.93762 0.92415 0.80572 0.93175 0.88165 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.94 101.05 1.00 1.23 16 2 O -0.28 -4.02 10.31 -19.07 -0.20 -4.21 16 3 C 0.17 2.19 6.70 -40.02 -0.27 1.93 16 4 C -0.20 -1.81 9.17 -41.28 -0.38 -2.19 16 5 C -0.22 -1.58 10.90 29.11 0.32 -1.26 16 6 S 0.24 2.15 20.15 -107.50 -2.17 -0.02 16 7 C -0.31 -4.33 5.12 -38.60 -0.20 -4.53 16 8 C 0.59 10.43 7.16 -14.93 -0.11 10.32 16 9 O -0.52 -11.58 16.45 5.13 0.08 -11.50 16 10 N -0.61 -9.34 2.97 -176.15 -0.52 -9.86 16 11 C 0.10 1.05 5.88 -3.71 -0.02 1.03 16 12 C -0.13 -1.34 6.08 -26.61 -0.16 -1.50 16 13 C -0.11 -1.37 4.85 -26.70 -0.13 -1.50 16 14 C -0.11 -1.73 1.97 -90.51 -0.18 -1.91 16 15 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 16 C 0.19 3.56 2.47 -67.92 -0.17 3.39 16 17 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 18 C -0.16 -2.88 9.14 37.16 0.34 -2.54 16 19 N -0.75 -18.24 4.32 -53.42 -0.23 -18.47 16 20 C -0.24 -6.91 10.41 -15.06 -0.16 -7.07 16 21 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 22 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 23 N -0.94 -30.26 13.97 55.49 0.78 -29.49 16 24 Si 0.88 23.78 27.74 -169.99 -4.71 19.07 16 25 H -0.28 -7.77 7.11 56.52 0.40 -7.36 16 26 H -0.29 -7.92 7.11 56.52 0.40 -7.52 16 27 H -0.28 -7.21 6.52 56.52 0.37 -6.84 16 28 C 0.12 2.17 5.46 -3.72 -0.02 2.15 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.35 7.88 -51.93 -0.41 -0.06 16 31 H 0.06 0.39 7.88 -51.93 -0.41 -0.02 16 32 H 0.15 0.92 6.99 -52.48 -0.37 0.55 16 33 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.08 0.79 4.28 -34.97 -0.15 0.64 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 40 H 0.04 0.60 6.40 -51.93 -0.33 0.27 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.36 9.03 5.48 -40.82 -0.22 8.80 16 44 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 45 H 0.10 2.17 6.54 -51.93 -0.34 1.83 16 46 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -37.17 375.02 -8.34 -45.51 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.80 Total: 5.66 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -0.22 Total: -2.34 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.02 Total: -57.82 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.11 Total: -15.71 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -4.71 Total: 19.07 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.17 Total: -0.02 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.17 -8.34 -45.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667353868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.696 kcal (2) G-P(sol) polarization free energy of solvation -37.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds