Wall clock time and date at job start Tue Mar 31 2020 20:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35786 * 117.00275 * 2 1 4 4 C 1.38012 * 123.47052 * 0.02877 * 3 2 1 5 5 C 1.33618 * 115.08886 * 179.97438 * 4 3 2 6 6 S 1.70577 * 111.14263 * 359.72420 * 5 4 3 7 7 C 1.37267 * 123.47198 * 179.97438 * 3 2 1 8 8 C 1.41731 * 125.47582 * 0.03059 * 7 3 2 9 9 O 1.21770 * 120.00259 * 51.05369 * 8 7 3 10 10 N 1.34773 * 119.99889 * 231.05598 * 8 7 3 11 11 C 1.46935 * 120.62847 * 355.92655 * 10 8 7 12 12 C 1.53191 * 108.77412 * 126.37368 * 11 10 8 13 13 C 1.53035 * 109.31815 * 54.62912 * 12 11 10 14 14 C 1.53035 * 109.52781 * 298.64304 * 13 12 11 15 15 H 1.09005 * 109.49975 * 301.40752 * 14 13 12 16 16 C 1.53001 * 109.49836 * 181.30419 * 14 13 12 17 17 H 1.08994 * 109.47343 * 300.00033 * 16 14 13 18 18 C 1.53006 * 109.46769 * 60.00452 * 16 14 13 19 19 N 1.46507 * 109.47324 * 179.97438 * 16 14 13 20 20 C 1.36935 * 119.99837 * 155.00271 * 19 16 14 21 21 H 1.07998 * 120.00076 * 0.02562 * 20 19 16 22 22 C 1.38816 * 119.99409 * 180.02562 * 20 19 16 23 23 N 1.31622 * 119.99459 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00381 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47278 * 89.99790 * 24 22 20 26 26 H 1.48500 * 109.46945 * 209.99838 * 24 22 20 27 27 H 1.48501 * 109.46972 * 329.99585 * 24 22 20 28 28 C 1.46924 * 120.63156 * 175.90050 * 10 8 7 29 29 H 1.08994 * 109.46953 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46942 * 299.99908 * 1 2 3 31 31 H 1.09002 * 109.47004 * 59.99696 * 1 2 3 32 32 H 1.08008 * 122.45832 * 359.97438 * 4 3 2 33 33 H 1.07996 * 124.42601 * 179.97438 * 5 4 3 34 34 H 1.08992 * 109.58822 * 6.58101 * 11 10 8 35 35 H 1.09003 * 109.57939 * 246.15367 * 11 10 8 36 36 H 1.09002 * 109.49291 * 294.67600 * 12 11 10 37 37 H 1.08993 * 109.49519 * 174.58649 * 12 11 10 38 38 H 1.08999 * 109.46007 * 58.65402 * 13 12 11 39 39 H 1.08999 * 109.46289 * 178.62738 * 13 12 11 40 40 H 1.09001 * 109.46636 * 299.99566 * 18 16 14 41 41 H 1.09001 * 109.47149 * 59.99752 * 18 16 14 42 42 H 1.08998 * 109.47025 * 179.97438 * 18 16 14 43 43 H 0.96997 * 119.99689 * 335.00656 * 19 16 14 44 44 H 0.96996 * 120.00070 * 180.02562 * 23 22 20 45 45 H 1.08998 * 109.58706 * 353.41695 * 28 10 8 46 46 H 1.09003 * 109.58567 * 113.84268 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3654 2.4107 0.0006 5 6 2.1391 3.5001 0.0010 6 16 3.7924 3.0804 0.0084 7 6 3.4094 1.3645 0.0005 8 6 4.3568 0.3103 0.0005 9 8 4.2710 -0.5854 -0.8200 10 7 5.3526 0.2992 0.9086 11 6 5.5222 1.4169 1.8472 12 6 5.5562 0.8613 3.2744 13 6 6.6413 -0.2132 3.3738 14 6 6.3139 -1.3610 2.4161 15 1 5.3383 -1.7774 2.6673 16 6 7.3818 -2.4496 2.5396 17 1 8.3566 -2.0327 2.2867 18 6 7.4094 -2.9764 3.9758 19 7 7.0675 -3.5484 1.6230 20 6 8.0667 -4.3651 1.1650 21 1 9.0864 -4.1995 1.4798 22 6 7.7688 -5.4059 0.2961 23 7 8.7292 -6.1912 -0.1437 24 14 6.0052 -5.6920 -0.2489 25 1 5.7365 -4.9135 -1.4846 26 1 5.7991 -7.1374 -0.5198 27 1 5.0779 -5.2524 0.8245 28 6 6.2887 -0.8310 0.9792 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2867 2.4660 0.0007 33 1 1.7664 4.5137 0.0011 34 1 4.6875 2.1101 1.7447 35 1 6.4578 1.9341 1.6341 36 1 4.5878 0.4240 3.5177 37 1 5.7775 1.6677 3.9735 38 1 7.6057 0.2189 3.1064 39 1 6.6841 -0.5929 4.3946 40 1 7.6431 -2.1590 4.6581 41 1 6.4345 -3.3933 4.2287 42 1 8.1699 -3.7522 4.0637 43 1 6.1516 -3.6974 1.3405 44 1 8.5212 -6.9183 -0.7512 45 1 5.9596 -1.6208 0.3040 46 1 7.2868 -0.4970 0.6954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667353868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:24 Heat of formation + Delta-G solvation = -43.557277 kcal Electronic energy + Delta-G solvation = -28101.056422 eV Core-core repulsion = 24310.436633 eV Total energy + Delta-G solvation = -3790.619789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65901 -40.62691 -39.08211 -37.07885 -36.99030 -34.71004 -33.30826 -32.09929 -31.30867 -29.94209 -28.08696 -26.70093 -26.00758 -25.06626 -24.23622 -22.60327 -21.59646 -21.07278 -20.50336 -19.63165 -19.06613 -17.96779 -17.69910 -16.94030 -16.79992 -16.59214 -16.23852 -15.92234 -15.77407 -15.44969 -15.18396 -14.79701 -14.72599 -14.38845 -14.32094 -14.24970 -13.99239 -13.92840 -13.49591 -13.33923 -13.24493 -12.93707 -12.60814 -12.58599 -12.38633 -12.23621 -12.16392 -12.01638 -11.89406 -11.81786 -11.66592 -11.44150 -11.29139 -11.07938 -10.98940 -9.85442 -9.59447 -9.31073 -9.04510 -8.05668 -5.35205 -0.42262 0.28386 0.83346 1.28264 1.35861 1.36853 1.37409 1.77593 2.14590 2.42693 2.53435 3.27430 3.48850 3.62060 3.77733 3.85461 3.91250 4.08941 4.11746 4.18648 4.25130 4.26619 4.32353 4.39588 4.55667 4.60705 4.60927 4.65526 4.73332 4.80559 4.86635 4.88380 4.90329 5.00230 5.03205 5.09871 5.17119 5.24724 5.33713 5.50070 5.50358 5.61180 5.77331 6.20474 6.20927 6.38098 7.05954 7.09223 7.84633 8.00930 9.16340 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.003787 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.517172 B = 7391.443457 C = 8616.110246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.166 3.834 4 C -0.217 4.217 5 C -0.186 4.186 6 S 0.286 5.714 7 C -0.373 4.373 8 C 0.588 3.412 9 O -0.590 6.590 10 N -0.604 5.604 11 C 0.088 3.912 12 C -0.124 4.124 13 C -0.108 4.108 14 C -0.093 4.093 15 H 0.054 0.946 16 C 0.176 3.824 17 H 0.053 0.947 18 C -0.154 4.154 19 N -0.755 5.755 20 C -0.215 4.215 21 H 0.068 0.932 22 C -0.056 4.056 23 N -0.980 5.980 24 Si 0.937 3.063 25 H -0.295 1.295 26 H -0.289 1.289 27 H -0.264 1.264 28 C 0.126 3.874 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.177 0.823 33 H 0.217 0.783 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.115 0.885 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.033 0.967 43 H 0.357 0.643 44 H 0.256 0.744 45 H 0.049 0.951 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.586 30.095 8.360 35.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.105 3.895 4 C -0.249 4.249 5 C -0.324 4.324 6 S 0.552 5.448 7 C -0.492 4.492 8 C 0.378 3.622 9 O -0.472 6.472 10 N -0.336 5.336 11 C -0.034 4.034 12 C -0.162 4.162 13 C -0.146 4.146 14 C -0.113 4.113 15 H 0.072 0.928 16 C 0.069 3.931 17 H 0.071 0.929 18 C -0.214 4.214 19 N -0.398 5.398 20 C -0.346 4.346 21 H 0.086 0.914 22 C -0.247 4.247 23 N -0.632 5.632 24 Si 0.767 3.233 25 H -0.222 1.222 26 H -0.215 1.215 27 H -0.189 1.189 28 C 0.003 3.997 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.194 0.806 33 H 0.234 0.766 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.133 0.867 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.190 0.810 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.005 30.197 7.927 35.084 hybrid contribution -2.406 -2.193 -1.075 3.429 sum -18.412 28.004 6.852 34.208 Atomic orbital electron populations 1.23437 0.75577 1.05430 1.03152 1.86178 1.24146 1.26258 1.87695 1.18655 0.90071 0.86405 0.94340 1.20170 1.03464 0.89452 1.11808 1.25647 0.98605 1.05146 1.02990 1.82862 1.04016 0.90343 1.67622 1.22593 0.95404 1.00867 1.30304 1.16242 0.80582 0.84882 0.80506 1.90836 1.75012 1.40928 1.40411 1.48209 1.29332 1.21893 1.34204 1.22427 1.04107 0.87869 0.89016 1.21892 0.99042 0.99554 0.95717 1.21625 0.99642 0.94026 0.99325 1.21661 0.98691 0.96454 0.94515 0.92751 1.20476 0.96514 0.86471 0.89682 0.92920 1.22299 1.00693 1.01079 0.97297 1.42968 1.05723 1.35164 1.55956 1.19069 0.89913 1.05990 1.19632 0.91439 1.25228 0.99864 0.98676 1.00948 1.69829 1.32578 1.21785 1.38997 0.85674 0.82605 0.76612 0.78390 1.22239 1.21544 1.18931 1.21425 0.92296 0.88132 0.97823 0.87630 0.90195 0.90873 0.80612 0.76638 0.88155 0.88916 0.92618 0.86673 0.90236 0.89399 0.89612 0.93893 0.94800 0.81047 0.93456 0.93275 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.94 113.37 1.13 1.42 16 2 O -0.33 -9.53 10.31 -91.16 -0.94 -10.47 16 3 C 0.17 4.14 6.70 21.99 0.15 4.29 16 4 C -0.22 -3.13 9.17 21.17 0.19 -2.93 16 5 C -0.19 -1.83 10.90 66.77 0.73 -1.11 16 6 S 0.29 4.21 20.15 -56.49 -1.14 3.07 16 7 C -0.37 -10.23 5.12 22.90 0.12 -10.11 16 8 C 0.59 21.64 7.16 85.10 0.61 22.25 16 9 O -0.59 -28.75 16.45 -4.57 -0.08 -28.83 16 10 N -0.60 -18.80 2.97 -829.39 -2.47 -21.26 16 11 C 0.09 1.69 5.88 86.36 0.51 2.20 16 12 C -0.12 -2.06 6.08 30.67 0.19 -1.87 16 13 C -0.11 -2.26 4.85 30.62 0.15 -2.11 16 14 C -0.09 -2.97 1.97 -10.73 -0.02 -2.99 16 15 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 16 C 0.18 6.76 2.47 44.99 0.11 6.87 16 17 H 0.05 2.07 8.08 -2.39 -0.02 2.05 16 18 C -0.15 -5.19 9.14 71.98 0.66 -4.53 16 19 N -0.76 -37.89 4.32 -322.92 -1.40 -39.28 16 20 C -0.21 -12.82 10.41 84.03 0.87 -11.94 16 21 H 0.07 4.28 8.06 -2.91 -0.02 4.26 16 22 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 23 N -0.98 -65.84 13.97 21.65 0.30 -65.53 16 24 Si 0.94 51.50 27.74 68.60 1.90 53.40 16 25 H -0.30 -16.77 7.11 99.48 0.71 -16.07 16 26 H -0.29 -15.58 7.11 99.48 0.71 -14.88 16 27 H -0.26 -13.68 6.52 99.48 0.65 -13.03 16 28 C 0.13 4.60 5.46 86.36 0.47 5.08 16 29 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 0.84 7.88 -2.39 -0.02 0.83 16 31 H 0.07 0.89 7.88 -2.39 -0.02 0.87 16 32 H 0.18 1.44 6.99 -2.91 -0.02 1.42 16 33 H 0.22 0.25 8.06 -2.91 -0.02 0.23 16 34 H 0.10 1.61 4.28 -13.18 -0.06 1.55 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.09 1.59 6.36 -2.39 -0.02 1.58 16 40 H 0.09 2.14 6.40 -2.39 -0.02 2.13 16 41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.36 18.47 5.48 -92.71 -0.51 17.96 16 44 H 0.26 16.51 8.31 -92.71 -0.77 15.74 16 45 H 0.05 2.30 6.54 -2.39 -0.02 2.29 16 46 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -89.84 375.02 2.90 -86.94 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.38 Total: 20.48 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 6.33 Total: 1.48 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -3.56 Total: -126.08 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -1.02 Total: -39.30 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 1.90 Total: 53.40 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.14 Total: 3.07 kcal Total: -89.84 2.90 -86.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667353868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.387 kcal (2) G-P(sol) polarization free energy of solvation -89.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds