Wall clock time and date at job start Tue Mar 31 2020 20:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35787 * 116.99997 * 2 1 4 4 C 1.38025 * 123.46843 * 0.02562 * 3 2 1 5 5 C 1.33607 * 115.08226 * 180.02562 * 4 3 2 6 6 S 1.70581 * 111.14770 * 0.02562 * 5 4 3 7 7 C 1.37266 * 123.47080 * 179.73278 * 3 2 1 8 8 C 1.41722 * 125.47567 * 359.97438 * 7 3 2 9 9 O 1.21772 * 119.99798 * 309.80640 * 8 7 3 10 10 N 1.34782 * 120.00065 * 129.81427 * 8 7 3 11 11 C 1.46924 * 120.63101 * 3.62292 * 10 8 7 12 12 C 1.52764 * 109.00617 * 233.58683 * 11 10 8 13 13 C 1.53036 * 109.38136 * 305.58677 * 12 11 10 14 14 C 1.53042 * 109.53878 * 61.24393 * 13 12 11 15 15 H 1.09000 * 109.49953 * 58.58325 * 14 13 12 16 16 C 1.53004 * 109.49737 * 178.68066 * 14 13 12 17 17 H 1.09000 * 109.46706 * 59.83643 * 16 14 13 18 18 C 1.52996 * 109.47029 * 299.83898 * 16 14 13 19 19 N 1.46500 * 109.46900 * 179.83638 * 16 14 13 20 20 C 1.36936 * 119.99650 * 205.00193 * 19 16 14 21 21 H 1.07999 * 120.00298 * 0.02562 * 20 19 16 22 22 C 1.38816 * 119.99967 * 180.02562 * 20 19 16 23 23 N 1.31614 * 119.99941 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 119.99773 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47046 * 90.00218 * 24 22 20 26 26 H 1.48505 * 109.47329 * 210.00160 * 24 22 20 27 27 H 1.48498 * 109.47288 * 330.00273 * 24 22 20 28 28 C 1.46930 * 120.62954 * 183.90279 * 10 8 7 29 29 H 1.08999 * 109.47464 * 60.00720 * 1 2 3 30 30 H 1.09002 * 109.47598 * 299.99949 * 1 2 3 31 31 H 1.09008 * 109.46877 * 180.02562 * 1 2 3 32 32 H 1.07998 * 122.45549 * 359.97438 * 4 3 2 33 33 H 1.08003 * 124.42756 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.58331 * 353.41937 * 11 10 8 35 35 H 1.08995 * 109.58647 * 113.84821 * 11 10 8 36 36 H 1.09002 * 109.56287 * 185.55096 * 12 11 10 37 37 H 1.08999 * 109.38442 * 65.51603 * 12 11 10 38 38 H 1.08998 * 109.46416 * 301.22136 * 13 12 11 39 39 H 1.09001 * 109.45771 * 181.26337 * 13 12 11 40 40 H 1.09004 * 109.46923 * 179.97438 * 18 16 14 41 41 H 1.09000 * 109.47168 * 299.99462 * 18 16 14 42 42 H 1.08995 * 109.47770 * 59.99862 * 18 16 14 43 43 H 0.96993 * 119.99829 * 25.00075 * 19 16 14 44 44 H 0.97002 * 120.00226 * 180.02562 * 23 22 20 45 45 H 1.08992 * 109.58692 * 246.15284 * 28 10 8 46 46 H 1.08999 * 109.58484 * 6.43599 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.3651 2.4108 0.0005 5 6 2.1387 3.5001 -0.0001 6 16 3.7922 3.0805 -0.0021 7 6 3.4093 1.3646 0.0053 8 6 4.3566 0.3105 0.0120 9 8 4.2580 -0.5916 0.8241 10 7 5.3667 0.3065 -0.8803 11 6 5.5453 1.4269 -1.8138 12 6 5.6063 0.8817 -3.2396 13 6 6.6954 -0.1898 -3.3274 14 6 6.3557 -1.3437 -2.3813 15 1 5.3853 -1.7610 -2.6502 16 6 7.4280 -2.4292 -2.4941 17 1 8.3982 -2.0106 -2.2264 18 6 7.4767 -2.9506 -3.9316 19 7 7.1043 -3.5318 -1.5853 20 6 8.0994 -4.3473 -1.1166 21 1 9.1229 -4.1776 -1.4165 22 6 7.7926 -5.3924 -0.2560 23 7 8.7490 -6.1766 0.1941 24 14 6.0224 -5.6856 0.2633 25 1 5.3724 -6.6139 -0.6963 26 1 5.9977 -6.2821 1.6231 27 1 5.2899 -4.3940 0.2761 28 6 6.3066 -0.8212 -0.9421 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 0.2865 2.4659 0.0005 33 1 1.7661 4.5138 -0.0002 34 1 4.7053 2.1155 -1.7231 35 1 6.4745 1.9486 -1.5851 36 1 5.8368 1.6924 -3.9308 37 1 4.6430 0.4436 -3.5009 38 1 7.6544 0.2430 -3.0425 39 1 6.7553 -0.5638 -4.3494 40 1 8.2410 -3.7236 -4.0121 41 1 6.5065 -3.3692 -4.1993 42 1 7.7175 -2.1304 -4.6078 43 1 6.1851 -3.6840 -1.3157 44 1 8.5346 -6.9071 0.7952 45 1 7.2991 -0.4865 -0.6408 46 1 5.9701 -1.6143 -0.2744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667353869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:27 Heat of formation + Delta-G solvation = -16.804545 kcal Electronic energy + Delta-G solvation = -28100.757716 eV Core-core repulsion = 24311.298012 eV Total energy + Delta-G solvation = -3789.459703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.59761 -39.62119 -37.71763 -36.19946 -35.51113 -32.95281 -31.76070 -30.88871 -29.91297 -28.53686 -27.28642 -25.63773 -24.80392 -23.61945 -22.84716 -21.45623 -20.29454 -19.78576 -19.56404 -18.16842 -17.41029 -17.04672 -16.64080 -16.04295 -15.63695 -15.11274 -14.92396 -14.75484 -14.44882 -14.16105 -14.02398 -13.87463 -13.32805 -13.17721 -13.02271 -12.90487 -12.76798 -12.48187 -12.34438 -12.17427 -11.85102 -11.53289 -11.42128 -11.32739 -11.09505 -10.98342 -10.89843 -10.71955 -10.56771 -10.24608 -10.03527 -9.88076 -9.70143 -9.46198 -8.96267 -8.84052 -8.43892 -8.28053 -7.16306 -5.67040 -3.01871 0.34605 1.07236 1.49044 2.15726 2.90524 3.20709 3.42834 3.50450 3.58124 3.61615 4.31648 4.65598 4.71935 4.75001 4.79732 4.87596 4.87963 4.93835 5.03000 5.19798 5.22018 5.25626 5.33879 5.45440 5.47475 5.59925 5.67749 5.68262 5.78477 5.84789 5.91208 5.99153 6.11583 6.13543 6.20919 6.39677 6.42460 6.50563 6.61817 6.74555 6.89772 6.99071 7.08122 7.54807 8.09030 8.34112 8.52272 9.31294 10.04642 10.24167 11.51294 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012980 B = 0.003788 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.720680 B = 7389.480244 C = 8629.071133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.284 6.284 3 C 0.171 3.829 4 C -0.204 4.204 5 C -0.217 4.217 6 S 0.242 5.758 7 C -0.312 4.312 8 C 0.593 3.407 9 O -0.516 6.516 10 N -0.607 5.607 11 C 0.096 3.904 12 C -0.131 4.131 13 C -0.114 4.114 14 C -0.107 4.107 15 H 0.069 0.931 16 C 0.185 3.815 17 H 0.056 0.944 18 C -0.165 4.165 19 N -0.749 5.749 20 C -0.240 4.240 21 H 0.090 0.910 22 C 0.007 3.993 23 N -0.936 5.936 24 Si 0.877 3.123 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.271 1.271 28 C 0.123 3.877 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.103 0.897 32 H 0.148 0.852 33 H 0.173 0.827 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.361 0.639 44 H 0.258 0.742 45 H 0.069 0.931 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.568 25.486 -6.097 30.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.196 6.196 3 C 0.112 3.888 4 C -0.238 4.238 5 C -0.355 4.355 6 S 0.507 5.493 7 C -0.432 4.432 8 C 0.381 3.619 9 O -0.393 6.393 10 N -0.341 5.341 11 C -0.028 4.028 12 C -0.170 4.170 13 C -0.152 4.152 14 C -0.127 4.127 15 H 0.087 0.913 16 C 0.076 3.924 17 H 0.074 0.926 18 C -0.224 4.224 19 N -0.392 5.392 20 C -0.370 4.370 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.584 5.584 24 Si 0.707 3.293 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.196 1.196 28 C 0.002 3.998 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.166 0.834 33 H 0.190 0.810 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.194 0.806 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.981 25.517 -5.568 29.624 hybrid contribution -3.036 -0.930 0.367 3.196 sum -17.017 24.586 -5.202 30.350 Atomic orbital electron populations 1.23157 0.78012 1.04518 1.01208 1.86245 1.21297 1.24439 1.87650 1.18152 0.89985 0.85505 0.95202 1.20006 1.01981 0.90864 1.10928 1.25092 0.99786 1.03642 1.06943 1.83149 1.03042 0.94758 1.68305 1.22630 0.95550 0.98770 1.26261 1.15623 0.80154 0.84799 0.81341 1.90901 1.73348 1.37404 1.37653 1.48114 1.29520 1.21611 1.34864 1.21933 1.02222 0.88930 0.89677 1.21821 1.00293 0.99201 0.95670 1.21615 0.98164 0.95228 1.00158 1.21814 1.00655 0.95892 0.94337 0.91288 1.20145 0.95476 0.87042 0.89777 0.92608 1.22444 1.01520 1.00367 0.98115 1.42833 1.06723 1.34186 1.55450 1.19040 0.89870 1.06176 1.21906 0.89235 1.24619 0.96674 0.97940 0.99655 1.69698 1.30829 1.20363 1.37485 0.86646 0.86434 0.78259 0.77974 1.21295 1.21801 1.19643 1.21694 0.91943 0.88367 0.97824 0.92602 0.92511 0.87821 0.83402 0.80981 0.89929 0.91085 0.90819 0.91689 0.91594 0.91046 0.92403 0.93741 0.93953 0.80561 0.93176 0.91252 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.94 101.05 1.00 1.23 16 2 O -0.28 -4.03 10.29 -19.07 -0.20 -4.22 16 3 C 0.17 2.20 6.70 -40.01 -0.27 1.93 16 4 C -0.20 -1.82 9.17 -41.28 -0.38 -2.19 16 5 C -0.22 -1.58 10.90 29.11 0.32 -1.27 16 6 S 0.24 2.15 20.11 -107.50 -2.16 -0.01 16 7 C -0.31 -4.34 5.14 -38.61 -0.20 -4.54 16 8 C 0.59 10.48 7.17 -14.93 -0.11 10.37 16 9 O -0.52 -11.64 16.42 5.12 0.08 -11.55 16 10 N -0.61 -9.39 2.98 -176.40 -0.53 -9.92 16 11 C 0.10 1.06 5.83 -3.93 -0.02 1.04 16 12 C -0.13 -1.35 6.06 -26.83 -0.16 -1.51 16 13 C -0.11 -1.37 4.86 -26.69 -0.13 -1.50 16 14 C -0.11 -1.73 1.97 -90.50 -0.18 -1.90 16 15 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 16 C 0.19 3.55 2.47 -67.93 -0.17 3.38 16 17 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 18 C -0.16 -2.87 9.14 37.16 0.34 -2.53 16 19 N -0.75 -18.20 4.32 -53.42 -0.23 -18.43 16 20 C -0.24 -6.91 10.41 -15.06 -0.16 -7.06 16 21 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 22 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 23 N -0.94 -30.27 13.97 55.49 0.78 -29.50 16 24 Si 0.88 23.67 27.73 -169.99 -4.71 18.96 16 25 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 26 H -0.29 -7.99 7.11 56.52 0.40 -7.59 16 27 H -0.27 -7.21 6.52 56.52 0.37 -6.84 16 28 C 0.12 2.18 5.46 -3.71 -0.02 2.16 16 29 H 0.06 0.35 7.88 -51.93 -0.41 -0.06 16 30 H 0.06 0.39 7.88 -51.93 -0.41 -0.02 16 31 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.15 0.92 6.99 -52.49 -0.37 0.56 16 33 H 0.17 0.69 8.06 -52.48 -0.42 0.27 16 34 H 0.08 0.79 4.27 -34.44 -0.15 0.65 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.81 6.37 -51.93 -0.33 0.48 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.04 0.60 6.41 -51.93 -0.33 0.27 16 43 H 0.36 9.00 5.48 -40.82 -0.22 8.77 16 44 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.10 2.22 6.53 -51.93 -0.34 1.88 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -37.22 374.89 -8.34 -45.56 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.80 Total: 5.75 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -0.23 Total: -2.29 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.02 Total: -57.84 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.11 Total: -15.77 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -4.71 Total: 18.96 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.16 Total: -0.01 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.22 -8.34 -45.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667353869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.752 kcal (2) G-P(sol) polarization free energy of solvation -37.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds