Wall clock time and date at job start Tue Mar 31 2020 20:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35782 * 117.00138 * 2 1 4 4 C 1.38030 * 123.47040 * 0.02562 * 3 2 1 5 5 C 1.33614 * 115.08292 * 179.97438 * 4 3 2 6 6 S 1.70575 * 111.14640 * 359.72265 * 5 4 3 7 7 C 1.37269 * 123.47430 * 180.02562 * 3 2 1 8 8 C 1.41722 * 125.47095 * 0.02562 * 7 3 2 9 9 O 1.21772 * 120.00182 * 51.06518 * 8 7 3 10 10 N 1.34783 * 120.00195 * 231.06029 * 8 7 3 11 11 C 1.46929 * 120.62650 * 355.93043 * 10 8 7 12 12 C 1.53197 * 108.77190 * 126.36644 * 11 10 8 13 13 C 1.53042 * 109.31170 * 54.63625 * 12 11 10 14 14 C 1.53032 * 109.53640 * 298.63373 * 13 12 11 15 15 H 1.09004 * 109.49840 * 301.37683 * 14 13 12 16 16 C 1.53008 * 109.49737 * 181.31809 * 14 13 12 17 17 H 1.08991 * 109.47056 * 59.99579 * 16 14 13 18 18 C 1.53003 * 109.46819 * 299.99734 * 16 14 13 19 19 N 1.46497 * 109.47342 * 179.97438 * 16 14 13 20 20 C 1.36931 * 120.00342 * 205.00219 * 19 16 14 21 21 H 1.08000 * 120.00076 * 359.97438 * 20 19 16 22 22 C 1.38804 * 120.00363 * 180.02562 * 20 19 16 23 23 N 1.31624 * 120.00163 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00353 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46665 * 59.99528 * 24 22 20 26 26 H 1.48494 * 109.47307 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.46951 * 299.99976 * 24 22 20 28 28 C 1.46922 * 120.63350 * 175.90895 * 10 8 7 29 29 H 1.09003 * 109.47460 * 300.00224 * 1 2 3 30 30 H 1.08998 * 109.47211 * 60.00251 * 1 2 3 31 31 H 1.09000 * 109.47136 * 180.02562 * 1 2 3 32 32 H 1.07994 * 122.45563 * 359.97438 * 4 3 2 33 33 H 1.08003 * 124.42124 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.58757 * 6.58466 * 11 10 8 35 35 H 1.08995 * 109.58916 * 246.15646 * 11 10 8 36 36 H 1.09000 * 109.49336 * 174.58561 * 12 11 10 37 37 H 1.08999 * 109.50081 * 294.68336 * 12 11 10 38 38 H 1.09002 * 109.45931 * 58.65518 * 13 12 11 39 39 H 1.09000 * 109.46014 * 178.62109 * 13 12 11 40 40 H 1.08997 * 109.47376 * 300.00169 * 18 16 14 41 41 H 1.09002 * 109.46802 * 59.99944 * 18 16 14 42 42 H 1.08999 * 109.47084 * 179.97438 * 18 16 14 43 43 H 0.97004 * 119.99838 * 24.99518 * 19 16 14 44 44 H 0.96997 * 120.00089 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.59002 * 113.84724 * 28 10 8 46 46 H 1.08999 * 109.70436 * 353.48891 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.3651 2.4108 0.0005 5 6 2.1389 3.5001 0.0010 6 16 3.7922 3.0805 0.0085 7 6 3.4093 1.3646 -0.0005 8 6 4.3566 0.3104 -0.0016 9 8 4.2703 -0.5849 -0.8225 10 7 5.3532 0.2989 0.9058 11 6 5.5235 1.4161 1.8447 12 6 5.5583 0.8599 3.2717 13 6 6.6437 -0.2146 3.3698 14 6 6.3157 -1.3622 2.4119 15 1 5.3407 -1.7792 2.6641 16 6 7.3838 -2.4508 2.5346 17 1 7.4042 -2.8263 3.5576 18 6 8.7519 -1.8653 2.1789 19 7 7.0690 -3.5493 1.6179 20 6 7.5307 -4.8119 1.8781 21 1 8.1273 -4.9979 2.7590 22 6 7.2329 -5.8527 1.0093 23 7 6.5063 -5.6261 -0.0645 24 14 7.8633 -7.5750 1.3640 25 1 7.3329 -8.0366 2.6720 26 1 7.4102 -8.4983 0.2929 27 1 9.3475 -7.5592 1.4094 28 6 6.2894 -0.8312 0.9752 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2866 2.4660 0.0005 33 1 1.7662 4.5138 0.0018 34 1 4.6885 2.1094 1.7431 35 1 6.4587 1.9335 1.6313 36 1 5.7802 1.6660 3.9710 37 1 4.5902 0.4224 3.5155 38 1 7.6078 0.2176 3.1020 39 1 6.6871 -0.5948 4.3904 40 1 8.7316 -1.4898 1.1558 41 1 8.9859 -1.0481 2.8613 42 1 9.5129 -2.6407 2.2667 43 1 6.5334 -3.3823 0.8265 44 1 6.2978 -6.3534 -0.6715 45 1 7.2872 -0.4971 0.6908 46 1 5.9623 -1.6215 0.2995 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667353870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:30 Heat of formation + Delta-G solvation = -17.216976 kcal Electronic energy + Delta-G solvation = -28016.562663 eV Core-core repulsion = 24227.085076 eV Total energy + Delta-G solvation = -3789.477588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.51275 -39.55278 -37.64790 -36.11343 -35.32105 -32.88846 -31.75878 -30.67272 -29.52601 -27.89330 -27.19401 -25.60697 -24.65845 -24.03528 -23.10282 -21.43118 -20.61225 -19.67514 -18.59203 -18.12611 -17.06592 -16.96057 -16.51716 -15.93913 -15.53877 -15.00535 -14.88540 -14.66434 -14.45104 -14.07780 -13.91746 -13.68906 -13.45893 -13.23762 -12.99379 -12.78688 -12.62827 -12.44630 -12.29039 -11.83401 -11.74997 -11.45609 -11.40844 -11.25733 -10.94045 -10.88201 -10.76482 -10.52874 -10.35896 -10.18800 -10.12248 -9.84001 -9.63625 -9.43775 -8.88327 -8.79708 -8.32388 -8.18896 -6.84203 -5.62875 -2.92712 0.42523 1.14607 1.56003 2.24247 2.99599 3.30125 3.51265 3.52918 3.55159 3.57002 4.39076 4.67001 4.75055 4.85063 4.88360 4.96850 4.97767 5.01679 5.15463 5.29110 5.32854 5.35300 5.44588 5.53768 5.56771 5.68497 5.76032 5.84151 5.93978 5.94514 5.97521 6.06371 6.17745 6.23065 6.34610 6.46304 6.52709 6.68733 6.76300 6.88982 6.99006 7.08705 7.22293 7.64482 7.80006 8.44765 8.54595 9.65135 10.24163 10.58197 11.59062 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.003309 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.215905 B = 8459.699364 C = 9718.285839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.282 6.282 3 C 0.170 3.830 4 C -0.203 4.203 5 C -0.218 4.218 6 S 0.238 5.762 7 C -0.310 4.310 8 C 0.592 3.408 9 O -0.512 6.512 10 N -0.606 5.606 11 C 0.097 3.903 12 C -0.132 4.132 13 C -0.114 4.114 14 C -0.103 4.103 15 H 0.073 0.927 16 C 0.181 3.819 17 H 0.048 0.952 18 C -0.169 4.169 19 N -0.725 5.725 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.929 5.929 24 Si 0.904 3.096 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 C 0.119 3.881 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.148 0.852 33 H 0.172 0.828 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.038 0.962 42 H 0.051 0.949 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.070 0.930 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.853 24.692 4.325 26.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.194 6.194 3 C 0.111 3.889 4 C -0.237 4.237 5 C -0.356 4.356 6 S 0.503 5.497 7 C -0.430 4.430 8 C 0.380 3.620 9 O -0.388 6.388 10 N -0.340 5.340 11 C -0.027 4.027 12 C -0.170 4.170 13 C -0.152 4.152 14 C -0.124 4.124 15 H 0.091 0.909 16 C 0.070 3.930 17 H 0.066 0.934 18 C -0.229 4.229 19 N -0.368 5.368 20 C -0.371 4.371 21 H 0.086 0.914 22 C -0.209 4.209 23 N -0.577 5.577 24 Si 0.736 3.264 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.214 1.214 28 C -0.003 4.003 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.166 0.834 33 H 0.190 0.810 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.220 0.780 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.434 24.655 3.915 26.350 hybrid contribution -1.587 -1.487 -0.058 2.176 sum -10.021 23.168 3.857 25.536 Atomic orbital electron populations 1.23155 0.78039 1.04572 1.01105 1.86264 1.21266 1.24324 1.87585 1.18160 0.90010 0.85534 0.95176 1.20014 1.01967 0.90888 1.10841 1.25068 0.99736 1.03595 1.07153 1.83108 1.03145 0.94923 1.68493 1.22630 0.95590 0.98666 1.26110 1.15626 0.80158 0.84744 0.81509 1.90917 1.72884 1.37607 1.37426 1.48084 1.30437 1.21543 1.33965 1.22002 1.02099 0.88997 0.89570 1.21895 1.00407 0.99073 0.95616 1.21622 0.98234 0.95527 0.99807 1.21776 1.00920 0.95563 0.94093 0.90886 1.20166 0.90821 0.87387 0.94624 0.93389 1.22573 1.00366 0.99677 1.00281 1.42519 1.63120 1.04076 1.27058 1.19167 1.26477 0.85447 1.06046 0.91351 1.24747 1.00810 0.97927 0.97422 1.69672 1.42433 1.31500 1.14057 0.86314 0.78288 0.84852 0.76983 1.21404 1.21774 1.21389 1.21801 0.91834 0.88426 0.98205 0.92668 0.92565 0.87750 0.83420 0.81044 0.89951 0.91219 0.91007 0.91618 0.91396 0.91672 0.93285 0.94269 0.92947 0.77974 0.93481 0.91191 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.94 101.05 1.00 1.25 16 2 O -0.28 -4.23 10.31 -19.06 -0.20 -4.42 16 3 C 0.17 2.31 6.70 -40.01 -0.27 2.04 16 4 C -0.20 -1.92 9.18 -41.28 -0.38 -2.29 16 5 C -0.22 -1.69 10.90 29.11 0.32 -1.37 16 6 S 0.24 2.22 20.14 -107.50 -2.17 0.05 16 7 C -0.31 -4.49 5.12 -38.60 -0.20 -4.69 16 8 C 0.59 10.82 7.16 -14.93 -0.11 10.71 16 9 O -0.51 -11.88 16.46 5.12 0.08 -11.80 16 10 N -0.61 -9.73 2.97 -176.13 -0.52 -10.25 16 11 C 0.10 1.13 5.88 -3.71 -0.02 1.11 16 12 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 13 C -0.11 -1.48 4.78 -26.69 -0.13 -1.61 16 14 C -0.10 -1.79 2.33 -90.50 -0.21 -2.00 16 15 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 16 C 0.18 3.65 2.72 -67.93 -0.18 3.47 16 17 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 18 C -0.17 -3.06 8.79 37.16 0.33 -2.73 16 19 N -0.73 -18.90 5.04 -53.43 -0.27 -19.17 16 20 C -0.24 -6.88 9.93 -15.06 -0.15 -7.03 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -29.47 13.06 55.49 0.72 -28.75 16 24 Si 0.90 23.16 29.55 -169.99 -5.02 18.14 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 C 0.12 2.16 5.20 -3.71 -0.02 2.14 16 29 H 0.05 0.39 7.88 -51.93 -0.41 -0.02 16 30 H 0.06 0.42 7.88 -51.93 -0.41 0.01 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.15 1.00 6.99 -52.49 -0.37 0.63 16 33 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 34 H 0.08 0.84 4.28 -34.93 -0.15 0.69 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.82 6.50 -51.93 -0.34 0.49 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.90 6.32 -51.93 -0.33 0.57 16 41 H 0.04 0.58 6.46 -51.93 -0.34 0.24 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.39 10.88 6.17 -40.82 -0.25 10.63 16 44 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 45 H 0.07 1.20 6.18 -51.93 -0.32 0.88 16 46 H 0.10 2.29 5.62 -51.93 -0.29 2.00 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -36.57 372.62 -8.58 -45.15 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.55 Total: 8.54 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -0.27 Total: -3.11 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.07 Total: -58.17 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.11 Total: -16.22 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.17 Total: 0.05 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.57 -8.58 -45.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667353870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.934 kcal (2) G-P(sol) polarization free energy of solvation -36.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds