Wall clock time and date at job start Tue Mar 31 2020 20:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35782 * 117.00138 * 2 1 4 4 C 1.38030 * 123.47040 * 0.02562 * 3 2 1 5 5 C 1.33614 * 115.08292 * 179.97438 * 4 3 2 6 6 S 1.70575 * 111.14640 * 359.72265 * 5 4 3 7 7 C 1.37269 * 123.47430 * 180.02562 * 3 2 1 8 8 C 1.41722 * 125.47095 * 0.02562 * 7 3 2 9 9 O 1.21772 * 120.00182 * 51.06518 * 8 7 3 10 10 N 1.34783 * 120.00195 * 231.06029 * 8 7 3 11 11 C 1.46929 * 120.62650 * 355.93043 * 10 8 7 12 12 C 1.53197 * 108.77190 * 126.36644 * 11 10 8 13 13 C 1.53042 * 109.31170 * 54.63625 * 12 11 10 14 14 C 1.53032 * 109.53640 * 298.63373 * 13 12 11 15 15 H 1.09004 * 109.49840 * 301.37683 * 14 13 12 16 16 C 1.53008 * 109.49737 * 181.31809 * 14 13 12 17 17 H 1.08991 * 109.47056 * 59.99579 * 16 14 13 18 18 C 1.53003 * 109.46819 * 299.99734 * 16 14 13 19 19 N 1.46497 * 109.47342 * 179.97438 * 16 14 13 20 20 C 1.36931 * 120.00342 * 205.00219 * 19 16 14 21 21 H 1.08000 * 120.00076 * 359.97438 * 20 19 16 22 22 C 1.38804 * 120.00363 * 180.02562 * 20 19 16 23 23 N 1.31624 * 120.00163 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00353 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46665 * 59.99528 * 24 22 20 26 26 H 1.48494 * 109.47307 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.46951 * 299.99976 * 24 22 20 28 28 C 1.46922 * 120.63350 * 175.90895 * 10 8 7 29 29 H 1.09003 * 109.47460 * 300.00224 * 1 2 3 30 30 H 1.08998 * 109.47211 * 60.00251 * 1 2 3 31 31 H 1.09000 * 109.47136 * 180.02562 * 1 2 3 32 32 H 1.07994 * 122.45563 * 359.97438 * 4 3 2 33 33 H 1.08003 * 124.42124 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.58757 * 6.58466 * 11 10 8 35 35 H 1.08995 * 109.58916 * 246.15646 * 11 10 8 36 36 H 1.09000 * 109.49336 * 174.58561 * 12 11 10 37 37 H 1.08999 * 109.50081 * 294.68336 * 12 11 10 38 38 H 1.09002 * 109.45931 * 58.65518 * 13 12 11 39 39 H 1.09000 * 109.46014 * 178.62109 * 13 12 11 40 40 H 1.08997 * 109.47376 * 300.00169 * 18 16 14 41 41 H 1.09002 * 109.46802 * 59.99944 * 18 16 14 42 42 H 1.08999 * 109.47084 * 179.97438 * 18 16 14 43 43 H 0.97004 * 119.99838 * 24.99518 * 19 16 14 44 44 H 0.96997 * 120.00089 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.59002 * 113.84724 * 28 10 8 46 46 H 1.08999 * 109.70436 * 353.48891 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.3651 2.4108 0.0005 5 6 2.1389 3.5001 0.0010 6 16 3.7922 3.0805 0.0085 7 6 3.4093 1.3646 -0.0005 8 6 4.3566 0.3104 -0.0016 9 8 4.2703 -0.5849 -0.8225 10 7 5.3532 0.2989 0.9058 11 6 5.5235 1.4161 1.8447 12 6 5.5583 0.8599 3.2717 13 6 6.6437 -0.2146 3.3698 14 6 6.3157 -1.3622 2.4119 15 1 5.3407 -1.7792 2.6641 16 6 7.3838 -2.4508 2.5346 17 1 7.4042 -2.8263 3.5576 18 6 8.7519 -1.8653 2.1789 19 7 7.0690 -3.5493 1.6179 20 6 7.5307 -4.8119 1.8781 21 1 8.1273 -4.9979 2.7590 22 6 7.2329 -5.8527 1.0093 23 7 6.5063 -5.6261 -0.0645 24 14 7.8633 -7.5750 1.3640 25 1 7.3329 -8.0366 2.6720 26 1 7.4102 -8.4983 0.2929 27 1 9.3475 -7.5592 1.4094 28 6 6.2894 -0.8312 0.9752 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2866 2.4660 0.0005 33 1 1.7662 4.5138 0.0018 34 1 4.6885 2.1094 1.7431 35 1 6.4587 1.9335 1.6313 36 1 5.7802 1.6660 3.9710 37 1 4.5902 0.4224 3.5155 38 1 7.6078 0.2176 3.1020 39 1 6.6871 -0.5948 4.3904 40 1 8.7316 -1.4898 1.1558 41 1 8.9859 -1.0481 2.8613 42 1 9.5129 -2.6407 2.2667 43 1 6.5334 -3.3823 0.8265 44 1 6.2978 -6.3534 -0.6715 45 1 7.2872 -0.4971 0.6908 46 1 5.9623 -1.6215 0.2995 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667353870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:29 Heat of formation + Delta-G solvation = -43.735055 kcal Electronic energy + Delta-G solvation = -28017.712574 eV Core-core repulsion = 24227.085076 eV Total energy + Delta-G solvation = -3790.627498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65147 -40.63436 -39.08069 -36.97727 -36.92342 -34.68560 -33.21186 -31.87843 -31.02106 -29.42180 -28.11622 -26.67359 -26.25690 -25.22944 -24.66486 -22.61383 -21.80539 -20.58658 -20.02874 -19.42395 -18.93667 -17.94744 -17.66270 -16.90928 -16.70132 -16.66484 -16.11981 -15.96679 -15.53997 -15.49050 -15.30730 -14.99144 -14.76634 -14.39455 -14.18017 -14.03310 -13.90562 -13.78361 -13.34336 -13.31757 -12.97027 -12.79978 -12.66308 -12.56183 -12.40631 -12.23069 -12.02442 -11.98998 -11.84195 -11.78508 -11.69636 -11.40796 -11.19381 -11.01484 -10.91631 -9.81810 -9.54339 -9.02762 -9.00370 -7.91504 -5.21851 -0.40146 0.30482 0.85122 1.39119 1.43587 1.48355 1.54523 1.79678 2.18562 2.56167 2.56256 3.40453 3.60267 3.73979 3.86697 3.89928 3.95327 4.08958 4.15932 4.22134 4.26391 4.32808 4.33589 4.38788 4.56103 4.62589 4.62819 4.66926 4.71664 4.81814 4.87645 4.89021 4.91266 5.08924 5.10750 5.13330 5.17838 5.24524 5.37034 5.44889 5.52172 5.56123 5.69770 6.23724 6.28750 6.41294 7.13519 7.33254 8.12261 8.33815 9.31854 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.003309 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.215905 B = 8459.699364 C = 9718.285839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.163 3.837 4 C -0.217 4.217 5 C -0.186 4.186 6 S 0.290 5.710 7 C -0.373 4.373 8 C 0.586 3.414 9 O -0.588 6.588 10 N -0.604 5.604 11 C 0.089 3.911 12 C -0.125 4.125 13 C -0.107 4.107 14 C -0.091 4.091 15 H 0.038 0.962 16 C 0.172 3.828 17 H 0.048 0.952 18 C -0.156 4.156 19 N -0.743 5.743 20 C -0.238 4.238 21 H 0.080 0.920 22 C -0.083 4.083 23 N -0.975 5.975 24 Si 0.976 3.024 25 H -0.276 1.276 26 H -0.299 1.299 27 H -0.275 1.275 28 C 0.127 3.873 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.177 0.823 33 H 0.218 0.782 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.084 0.916 42 H 0.034 0.966 43 H 0.368 0.632 44 H 0.248 0.752 45 H 0.081 0.919 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.653 28.924 6.822 31.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.103 3.897 4 C -0.249 4.249 5 C -0.324 4.324 6 S 0.555 5.445 7 C -0.491 4.491 8 C 0.376 3.624 9 O -0.470 6.470 10 N -0.336 5.336 11 C -0.033 4.033 12 C -0.163 4.163 13 C -0.145 4.145 14 C -0.111 4.111 15 H 0.057 0.943 16 C 0.064 3.936 17 H 0.066 0.934 18 C -0.215 4.215 19 N -0.384 5.384 20 C -0.370 4.370 21 H 0.097 0.903 22 C -0.275 4.275 23 N -0.626 5.626 24 Si 0.805 3.195 25 H -0.202 1.202 26 H -0.226 1.226 27 H -0.200 1.200 28 C 0.004 3.996 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.194 0.806 33 H 0.235 0.765 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.053 0.947 43 H 0.201 0.799 44 H 0.057 0.943 45 H 0.099 0.901 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.200 28.958 6.508 30.792 hybrid contribution -1.706 -2.670 -0.791 3.265 sum -9.905 26.288 5.717 28.668 Atomic orbital electron populations 1.23430 0.75602 1.05366 1.03169 1.86195 1.24168 1.26378 1.87685 1.18706 0.90168 0.86418 0.94411 1.20164 1.03464 0.89409 1.11864 1.25650 0.98622 1.05112 1.03002 1.82764 1.03974 0.90100 1.67639 1.22608 0.95376 1.00974 1.30189 1.16279 0.80618 0.84883 0.80630 1.90857 1.74873 1.40840 1.40461 1.48195 1.29378 1.21846 1.34222 1.22425 1.04255 0.87835 0.88793 1.21904 0.98851 0.99566 0.96023 1.21620 0.99936 0.94102 0.98831 1.21603 0.98183 0.96472 0.94820 0.94316 1.20481 0.93091 0.86858 0.93201 0.93387 1.22388 0.97745 1.00395 1.01022 1.42826 1.62946 1.05093 1.27518 1.19647 1.25099 0.86569 1.05688 0.90255 1.25657 1.01932 1.02325 0.97582 1.69892 1.44852 1.32285 1.15544 0.85172 0.78118 0.79517 0.76730 1.20234 1.22556 1.20046 1.21485 0.92497 0.88088 0.97530 0.90204 0.90719 0.87809 0.80618 0.76515 0.88184 0.88476 0.86479 0.93221 0.89313 0.90332 0.94000 0.89688 0.94686 0.79941 0.94327 0.90115 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.94 113.37 1.13 1.47 16 2 O -0.33 -10.56 10.31 -91.11 -0.94 -11.50 16 3 C 0.16 4.45 6.70 21.99 0.15 4.60 16 4 C -0.22 -3.49 9.18 21.17 0.19 -3.29 16 5 C -0.19 -2.05 10.90 66.77 0.73 -1.33 16 6 S 0.29 4.58 20.14 -56.49 -1.14 3.45 16 7 C -0.37 -10.98 5.12 22.90 0.12 -10.86 16 8 C 0.59 23.06 7.16 85.10 0.61 23.67 16 9 O -0.59 -30.57 16.46 -4.58 -0.08 -30.65 16 10 N -0.60 -20.14 2.97 -829.35 -2.46 -22.61 16 11 C 0.09 1.86 5.88 86.36 0.51 2.37 16 12 C -0.13 -2.38 6.08 30.67 0.19 -2.20 16 13 C -0.11 -2.50 4.78 30.62 0.15 -2.35 16 14 C -0.09 -3.23 2.33 -10.72 -0.02 -3.26 16 15 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 16 C 0.17 7.10 2.72 45.00 0.12 7.22 16 17 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 18 C -0.16 -5.50 8.79 71.98 0.63 -4.87 16 19 N -0.74 -40.90 5.04 -322.95 -1.63 -42.53 16 20 C -0.24 -14.10 9.93 84.03 0.83 -13.27 16 21 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 22 C -0.08 -5.15 5.50 84.86 0.47 -4.68 16 23 N -0.97 -65.55 13.06 21.65 0.28 -65.26 16 24 Si 0.98 49.13 29.55 68.60 2.03 51.16 16 25 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 26 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 27 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 28 C 0.13 4.92 5.20 86.36 0.45 5.37 16 29 H 0.08 1.03 7.88 -2.39 -0.02 1.01 16 30 H 0.07 1.06 7.88 -2.39 -0.02 1.04 16 31 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.18 1.72 6.99 -2.91 -0.02 1.70 16 33 H 0.22 0.44 8.06 -2.91 -0.02 0.42 16 34 H 0.10 1.77 4.28 -13.19 -0.06 1.71 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.75 6.50 -2.39 -0.02 1.73 16 39 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.04 1.52 6.32 -2.39 -0.02 1.51 16 41 H 0.08 2.21 6.46 -2.39 -0.02 2.20 16 42 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.37 22.66 6.17 -92.71 -0.57 22.08 16 44 H 0.25 16.24 8.31 -92.71 -0.77 15.47 16 45 H 0.08 2.88 6.18 -2.39 -0.01 2.87 16 46 H 0.04 2.18 5.62 -2.39 -0.01 2.17 16 Total: -1.00 -91.05 372.62 2.70 -88.35 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.39 Total: 31.01 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 6.25 Total: -1.41 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -3.81 Total: -130.40 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.01 Total: -42.15 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 2.03 Total: 51.16 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -1.14 Total: 3.45 kcal Total: -91.05 2.70 -88.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667353870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.617 kcal (2) G-P(sol) polarization free energy of solvation -91.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds