Wall clock time and date at job start Tue Mar 31 2020 20:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47447 * 2 1 4 4 C 1.53004 * 109.46776 * 239.99659 * 2 1 3 5 5 C 1.53008 * 109.46689 * 175.00274 * 4 2 1 6 6 N 1.46902 * 109.46622 * 180.02562 * 5 4 2 7 7 C 1.46906 * 110.99573 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46990 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99883 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99971 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00013 * 179.97438 * 10 8 7 12 12 H 1.07992 * 119.99812 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99796 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00211 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99595 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46808 * 90.00114 * 15 13 11 17 17 H 1.48498 * 109.47199 * 210.00000 * 15 13 11 18 18 H 1.48501 * 109.47591 * 330.00470 * 15 13 11 19 19 N 1.46499 * 109.46933 * 120.00190 * 2 1 3 20 20 C 1.34778 * 120.00004 * 274.99442 * 19 2 1 21 21 O 1.21511 * 119.99818 * 0.02562 * 20 19 2 22 22 C 1.48158 * 120.00330 * 179.97438 * 20 19 2 23 23 C 1.39890 * 120.90882 * 180.02562 * 22 20 19 24 24 C 1.38044 * 119.06464 * 180.02562 * 23 22 20 25 25 N 1.31882 * 120.93730 * 0.02562 * 24 23 22 26 26 C 1.31954 * 122.01089 * 359.97438 * 25 24 23 27 27 F 1.35102 * 119.58845 * 179.97438 * 26 25 24 28 28 C 1.38528 * 120.82849 * 359.72468 * 26 25 24 29 29 H 1.08996 * 109.47447 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47093 * 300.00423 * 1 2 3 31 31 H 1.09000 * 109.47134 * 59.99722 * 1 2 3 32 32 H 1.09006 * 109.46807 * 55.00633 * 4 2 1 33 33 H 1.08995 * 109.47458 * 295.00251 * 4 2 1 34 34 H 1.08990 * 109.46924 * 60.00331 * 5 4 2 35 35 H 1.09004 * 109.46978 * 300.00208 * 5 4 2 36 36 H 1.00896 * 111.00219 * 303.95583 * 6 5 4 37 37 H 1.09002 * 109.46991 * 299.99841 * 7 6 5 38 38 H 1.09000 * 109.47202 * 60.00133 * 7 6 5 39 39 H 0.97000 * 120.00083 * 0.02562 * 10 8 7 40 40 H 0.96998 * 120.00198 * 179.97438 * 14 13 11 41 41 H 0.97003 * 120.00332 * 94.99523 * 19 2 1 42 42 H 1.07998 * 120.46533 * 359.97438 * 23 22 20 43 43 H 1.07997 * 119.53068 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.51808 * 180.28860 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 7 4.0544 -1.3055 -2.5134 7 6 5.5179 -1.2220 -2.6089 8 6 5.9822 -1.9408 -3.8494 9 8 5.1734 -2.4702 -4.5820 10 7 7.2959 -1.9946 -4.1452 11 6 7.7184 -2.6491 -5.2734 12 1 6.9984 -3.1218 -5.9249 13 6 9.0729 -2.7050 -5.5781 14 7 9.9491 -2.1310 -4.7845 15 14 9.6485 -3.5973 -7.1149 16 1 9.6852 -2.6462 -8.2550 17 1 11.0080 -4.1494 -6.8869 18 1 8.7098 -4.7054 -7.4249 19 7 2.0183 -0.6906 1.1961 20 6 2.1471 -0.0183 2.3571 21 8 1.8578 1.1606 2.4118 22 6 2.6404 -0.7168 3.5670 23 6 2.7808 -0.0376 4.7819 24 6 3.2443 -0.7257 5.8852 25 7 3.5536 -2.0052 5.8056 26 6 3.4365 -2.6845 4.6803 27 9 3.7679 -3.9939 4.6540 28 6 2.9730 -2.0730 3.5270 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -0.2617 -2.1370 33 1 1.7515 -1.7716 -1.2056 34 1 3.9993 -1.0729 -0.4260 35 1 3.8532 0.4369 -1.3573 36 1 3.7449 -2.2657 -2.5286 37 1 5.8195 -0.1758 -2.6614 38 1 5.9664 -1.6858 -1.7304 39 1 7.9427 -1.5709 -3.5594 40 1 10.8947 -2.1703 -4.9970 41 1 2.2489 -1.6319 1.1526 42 1 2.5309 1.0105 4.8553 43 1 3.3560 -0.2086 6.8267 44 1 2.8747 -2.6349 2.6099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667994675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:31 Heat of formation + Delta-G solvation = -79.921770 kcal Electronic energy + Delta-G solvation = -27741.984729 eV Core-core repulsion = 23415.867632 eV Total energy + Delta-G solvation = -4326.117097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.50665 -41.15255 -39.69985 -38.35616 -37.10670 -35.14454 -33.91259 -33.69639 -31.86954 -31.32305 -31.17916 -29.34799 -26.33326 -25.67615 -24.31892 -24.04616 -22.45718 -21.66251 -21.06630 -19.33304 -19.02055 -17.95824 -17.88419 -17.09556 -16.66552 -16.60857 -16.28718 -16.20040 -15.59252 -15.36506 -15.12832 -14.73313 -14.45578 -14.39886 -13.99439 -13.91943 -13.84766 -13.68245 -13.58358 -13.15381 -12.84560 -12.77436 -12.36394 -12.29628 -11.76479 -11.55372 -11.40588 -11.25293 -11.12959 -11.02639 -10.78682 -10.66264 -10.41058 -10.24184 -10.23519 -9.66440 -9.58801 -9.53128 -8.50410 -8.11699 -7.98545 -6.43785 -3.84813 -0.02429 0.27093 2.28444 2.50351 2.93781 3.09817 3.16508 3.25272 3.30914 3.74615 3.87551 3.94973 4.04799 4.21098 4.23532 4.24335 4.64995 4.67477 4.77556 4.88261 4.89799 5.08600 5.12490 5.16550 5.23288 5.24521 5.32485 5.40184 5.41885 5.62869 5.70090 5.79433 5.84726 5.89907 5.93727 5.97226 6.10065 6.23481 6.91960 6.97799 7.14138 7.53221 7.59430 7.61181 8.03960 8.58686 9.15564 9.51792 10.02955 10.73942 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011943 B = 0.002042 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.857040 B =13705.923649 C =15235.166350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.095 0.905 4 C -0.126 4.126 5 C 0.058 3.942 6 N -0.669 5.669 7 C 0.051 3.949 8 C 0.440 3.560 9 O -0.584 6.584 10 N -0.563 5.563 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 N -0.713 5.713 20 C 0.560 3.440 21 O -0.522 6.522 22 C -0.058 4.058 23 C -0.128 4.128 24 C 0.137 3.863 25 N -0.500 5.500 26 C 0.310 3.690 27 F -0.106 7.106 28 C -0.165 4.165 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.024 0.976 35 H 0.072 0.928 36 H 0.348 0.652 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.401 0.599 42 H 0.159 0.841 43 H 0.177 0.823 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.060 4.221 20.970 26.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.113 0.887 4 C -0.164 4.164 5 C -0.071 4.071 6 N -0.301 5.301 7 C -0.082 4.082 8 C 0.225 3.775 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 N -0.365 5.365 20 C 0.346 3.654 21 O -0.398 6.398 22 C -0.069 4.069 23 C -0.148 4.148 24 C -0.019 4.019 25 N -0.215 5.215 26 C 0.156 3.844 27 F -0.085 7.085 28 C -0.187 4.187 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.042 0.958 35 H 0.090 0.910 36 H 0.168 0.832 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.237 0.763 42 H 0.176 0.824 43 H 0.194 0.806 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.393 4.770 20.749 26.870 hybrid contribution 1.092 -1.174 -0.383 1.649 sum -15.301 3.596 20.366 25.726 Atomic orbital electron populations 1.22166 0.94630 1.02417 1.02892 1.21111 0.94314 0.97819 0.82937 0.88720 1.21908 0.95961 1.01356 0.97213 1.21980 0.94168 0.99950 0.91029 1.60051 1.09913 1.21717 1.38430 1.21670 0.88284 1.01336 0.96902 1.19794 0.83349 0.85969 0.88347 1.90518 1.53312 1.50633 1.52349 1.41871 1.05430 1.48876 1.23806 1.19706 0.91983 1.30242 1.01013 0.87898 1.25275 0.95626 0.97813 0.99249 1.69611 1.02558 1.44284 1.37844 0.85850 0.77882 0.79515 0.80996 1.20354 1.20921 1.19410 1.46090 1.66564 1.14244 1.09646 1.17998 0.78129 0.86500 0.82816 1.90810 1.49337 1.14984 1.84639 1.20310 0.98429 0.92913 0.95254 1.22396 0.98021 1.02766 0.91656 1.22632 0.92658 0.87551 0.99099 1.66921 1.16877 1.10455 1.27214 1.17980 0.96180 0.80128 0.90085 1.91681 1.89557 1.30732 1.96544 1.22028 1.01977 0.95262 0.99428 0.92271 0.92086 0.90985 0.88721 0.91177 0.95756 0.90959 0.83249 0.89613 0.93970 0.77458 0.91836 0.76350 0.82351 0.80570 0.82999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.48 37.16 0.35 -0.79 16 2 C 0.14 1.10 2.57 -67.93 -0.17 0.92 16 3 H 0.09 0.87 7.58 -51.93 -0.39 0.48 16 4 C -0.13 -1.05 5.01 -26.72 -0.13 -1.18 16 5 C 0.06 0.64 5.57 -3.82 -0.02 0.61 16 6 N -0.67 -10.13 6.12 -115.05 -0.70 -10.83 16 7 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 8 C 0.44 10.30 7.82 -10.99 -0.09 10.21 16 9 O -0.58 -15.71 15.78 5.55 0.09 -15.62 16 10 N -0.56 -14.24 5.29 -10.97 -0.06 -14.30 16 11 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 12 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 15 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 19 N -0.71 -5.09 4.49 -54.65 -0.25 -5.33 16 20 C 0.56 4.97 7.76 -12.19 -0.09 4.88 16 21 O -0.52 -6.22 16.11 5.36 0.09 -6.13 16 22 C -0.06 -0.44 5.91 -104.66 -0.62 -1.05 16 23 C -0.13 -0.83 9.68 -39.03 -0.38 -1.21 16 24 C 0.14 0.85 11.17 -17.60 -0.20 0.65 16 25 N -0.50 -4.48 10.35 -13.64 -0.14 -4.62 16 26 C 0.31 2.72 8.41 -17.39 -0.15 2.57 16 27 F -0.11 -1.02 17.29 2.25 0.04 -0.98 16 28 C -0.17 -1.14 9.59 -38.93 -0.37 -1.51 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.02 0.24 7.75 -51.93 -0.40 -0.16 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.35 5.35 8.43 -39.29 -0.33 5.02 16 37 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 40 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.40 2.09 6.74 -40.82 -0.28 1.82 16 42 H 0.16 0.86 7.74 -52.49 -0.41 0.46 16 43 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.15 0.69 6.53 -52.49 -0.34 0.34 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -34.20 385.01 -7.36 -41.56 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -5.79 Total: 11.33 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -2.14 Total: 6.95 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.42 Total: -58.88 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.17 Total: -21.75 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.20 -7.36 -41.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667994675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.357 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds