Wall clock time and date at job start Tue Mar 31 2020 20:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47447 * 2 1 4 4 C 1.53004 * 109.46776 * 239.99659 * 2 1 3 5 5 C 1.53008 * 109.46689 * 175.00274 * 4 2 1 6 6 N 1.46902 * 109.46622 * 180.02562 * 5 4 2 7 7 C 1.46906 * 110.99573 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46990 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99883 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99971 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00013 * 179.97438 * 10 8 7 12 12 H 1.07992 * 119.99812 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99796 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00211 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99595 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46808 * 90.00114 * 15 13 11 17 17 H 1.48498 * 109.47199 * 210.00000 * 15 13 11 18 18 H 1.48501 * 109.47591 * 330.00470 * 15 13 11 19 19 N 1.46499 * 109.46933 * 120.00190 * 2 1 3 20 20 C 1.34778 * 120.00004 * 274.99442 * 19 2 1 21 21 O 1.21511 * 119.99818 * 0.02562 * 20 19 2 22 22 C 1.48158 * 120.00330 * 179.97438 * 20 19 2 23 23 C 1.39890 * 120.90882 * 180.02562 * 22 20 19 24 24 C 1.38044 * 119.06464 * 180.02562 * 23 22 20 25 25 N 1.31882 * 120.93730 * 0.02562 * 24 23 22 26 26 C 1.31954 * 122.01089 * 359.97438 * 25 24 23 27 27 F 1.35102 * 119.58845 * 179.97438 * 26 25 24 28 28 C 1.38528 * 120.82849 * 359.72468 * 26 25 24 29 29 H 1.08996 * 109.47447 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47093 * 300.00423 * 1 2 3 31 31 H 1.09000 * 109.47134 * 59.99722 * 1 2 3 32 32 H 1.09006 * 109.46807 * 55.00633 * 4 2 1 33 33 H 1.08995 * 109.47458 * 295.00251 * 4 2 1 34 34 H 1.08990 * 109.46924 * 60.00331 * 5 4 2 35 35 H 1.09004 * 109.46978 * 300.00208 * 5 4 2 36 36 H 1.00896 * 111.00219 * 303.95583 * 6 5 4 37 37 H 1.09002 * 109.46991 * 299.99841 * 7 6 5 38 38 H 1.09000 * 109.47202 * 60.00133 * 7 6 5 39 39 H 0.97000 * 120.00083 * 0.02562 * 10 8 7 40 40 H 0.96998 * 120.00198 * 179.97438 * 14 13 11 41 41 H 0.97003 * 120.00332 * 94.99523 * 19 2 1 42 42 H 1.07998 * 120.46533 * 359.97438 * 23 22 20 43 43 H 1.07997 * 119.53068 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.51808 * 180.28860 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 7 4.0544 -1.3055 -2.5134 7 6 5.5179 -1.2220 -2.6089 8 6 5.9822 -1.9408 -3.8494 9 8 5.1734 -2.4702 -4.5820 10 7 7.2959 -1.9946 -4.1452 11 6 7.7184 -2.6491 -5.2734 12 1 6.9984 -3.1218 -5.9249 13 6 9.0729 -2.7050 -5.5781 14 7 9.9491 -2.1310 -4.7845 15 14 9.6485 -3.5973 -7.1149 16 1 9.6852 -2.6462 -8.2550 17 1 11.0080 -4.1494 -6.8869 18 1 8.7098 -4.7054 -7.4249 19 7 2.0183 -0.6906 1.1961 20 6 2.1471 -0.0183 2.3571 21 8 1.8578 1.1606 2.4118 22 6 2.6404 -0.7168 3.5670 23 6 2.7808 -0.0376 4.7819 24 6 3.2443 -0.7257 5.8852 25 7 3.5536 -2.0052 5.8056 26 6 3.4365 -2.6845 4.6803 27 9 3.7679 -3.9939 4.6540 28 6 2.9730 -2.0730 3.5270 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -0.2617 -2.1370 33 1 1.7515 -1.7716 -1.2056 34 1 3.9993 -1.0729 -0.4260 35 1 3.8532 0.4369 -1.3573 36 1 3.7449 -2.2657 -2.5286 37 1 5.8195 -0.1758 -2.6614 38 1 5.9664 -1.6858 -1.7304 39 1 7.9427 -1.5709 -3.5594 40 1 10.8947 -2.1703 -4.9970 41 1 2.2489 -1.6319 1.1526 42 1 2.5309 1.0105 4.8553 43 1 3.3560 -0.2086 6.8267 44 1 2.8747 -2.6349 2.6099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667994675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:30 Heat of formation + Delta-G solvation = -106.227668 kcal Electronic energy + Delta-G solvation = -27743.125438 eV Core-core repulsion = 23415.867632 eV Total energy + Delta-G solvation = -4327.257806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.16011 -41.76194 -40.36395 -40.12856 -38.00538 -36.34213 -35.73001 -34.38005 -33.28725 -32.51061 -31.86406 -30.30389 -27.79963 -26.36208 -25.73318 -24.76560 -23.36806 -22.38215 -21.74073 -21.07350 -19.93756 -19.67274 -18.53109 -17.84975 -17.69560 -17.35921 -17.25700 -16.97593 -16.78224 -16.48136 -16.12584 -15.97195 -15.68203 -15.35592 -15.20753 -15.07459 -14.78272 -14.56616 -14.32826 -14.18129 -13.81222 -13.59589 -13.49057 -13.28905 -13.24843 -12.94777 -12.81126 -12.43108 -12.27729 -12.13949 -12.06519 -11.81689 -11.51480 -11.48015 -11.26216 -10.84680 -10.38546 -10.22927 -10.19070 -10.02781 -9.32877 -8.47616 -5.96542 -0.59603 -0.26002 1.37783 1.41733 1.54442 1.64569 1.88729 2.04005 2.28490 2.38714 2.53370 2.87967 3.19757 3.20572 3.47251 3.55693 3.70750 3.72364 3.88611 4.00749 4.19001 4.25661 4.30348 4.39256 4.43116 4.45795 4.52328 4.60204 4.63480 4.68144 4.80318 4.83302 4.95499 5.04922 5.20085 5.32185 5.37525 5.40241 5.45015 5.87738 6.08973 6.32523 6.43367 6.44494 6.58752 6.98364 7.11498 7.55097 8.09943 8.69821 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011943 B = 0.002042 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.857040 B =13705.923649 C =15235.166350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.148 3.852 3 H 0.080 0.920 4 C -0.115 4.115 5 C 0.060 3.940 6 N -0.682 5.682 7 C 0.065 3.935 8 C 0.437 3.563 9 O -0.622 6.622 10 N -0.574 5.574 11 C -0.334 4.334 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.921 5.921 15 Si 0.993 3.007 16 H -0.271 1.271 17 H -0.271 1.271 18 H -0.272 1.272 19 N -0.704 5.704 20 C 0.562 3.438 21 O -0.556 6.556 22 C -0.068 4.068 23 C -0.123 4.123 24 C 0.141 3.859 25 N -0.524 5.524 26 C 0.288 3.712 27 F -0.117 7.117 28 C -0.154 4.154 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.347 0.653 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.412 0.588 42 H 0.169 0.831 43 H 0.210 0.790 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.267 4.313 21.613 27.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.044 3.956 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.068 4.068 6 N -0.315 5.315 7 C -0.068 4.068 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.211 5.211 11 C -0.463 4.463 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.562 5.562 15 Si 0.817 3.183 16 H -0.197 1.197 17 H -0.196 1.196 18 H -0.196 1.196 19 N -0.356 5.356 20 C 0.348 3.652 21 O -0.435 6.435 22 C -0.079 4.079 23 C -0.144 4.144 24 C -0.015 4.015 25 N -0.240 5.240 26 C 0.135 3.865 27 F -0.097 7.097 28 C -0.176 4.176 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.165 0.835 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.250 0.750 42 H 0.187 0.813 43 H 0.226 0.774 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -16.597 4.852 21.409 27.520 hybrid contribution 1.100 -1.151 -0.531 1.678 sum -15.497 3.702 20.877 26.262 Atomic orbital electron populations 1.22116 0.93815 1.03049 1.02638 1.20991 0.94832 0.96996 0.82772 0.90186 1.21801 0.94042 1.02262 0.97241 1.22049 0.95735 0.99241 0.89823 1.60043 1.08431 1.21955 1.41074 1.21520 0.89883 1.01183 0.94194 1.20882 0.82321 0.84819 0.89494 1.90486 1.54118 1.52091 1.54182 1.41955 1.06381 1.49249 1.23533 1.19676 0.92349 1.31984 1.02307 0.90217 1.26059 0.95203 0.98115 1.01985 1.69671 1.02956 1.44605 1.38990 0.84924 0.77628 0.78306 0.77467 1.19670 1.19567 1.19634 1.46027 1.65787 1.14718 1.09061 1.18148 0.77570 0.86084 0.83359 1.90796 1.51074 1.16455 1.85191 1.20284 0.99256 0.93209 0.95158 1.22612 0.97064 1.03251 0.91427 1.23154 0.91462 0.86672 1.00250 1.66932 1.17618 1.11665 1.27736 1.18188 0.97497 0.79978 0.90834 1.91647 1.89857 1.31512 1.96639 1.22121 1.00811 0.94989 0.99662 0.91171 0.93266 0.90336 0.89128 0.89791 0.94279 0.91309 0.83452 0.88233 0.91641 0.77019 0.91291 0.75031 0.81348 0.77377 0.80872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.48 71.98 0.68 -1.27 16 2 C 0.15 2.05 2.57 44.99 0.12 2.16 16 3 H 0.08 1.39 7.58 -2.39 -0.02 1.38 16 4 C -0.12 -1.68 5.01 30.60 0.15 -1.52 16 5 C 0.06 1.18 5.57 86.31 0.48 1.66 16 6 N -0.68 -19.59 6.12 -517.91 -3.17 -22.76 16 7 C 0.06 2.14 6.17 85.56 0.53 2.66 16 8 C 0.44 20.49 7.82 87.66 0.69 21.17 16 9 O -0.62 -33.92 15.78 -3.05 -0.05 -33.97 16 10 N -0.57 -29.29 5.29 -307.00 -1.62 -30.91 16 11 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 12 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 13 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 14 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 15 Si 0.99 42.73 29.55 68.60 2.03 44.75 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 19 N -0.70 -8.69 4.49 -445.11 -2.00 -10.69 16 20 C 0.56 9.22 7.76 86.88 0.67 9.89 16 21 O -0.56 -12.85 16.11 -3.75 -0.06 -12.91 16 22 C -0.07 -0.92 5.91 -19.89 -0.12 -1.04 16 23 C -0.12 -1.41 9.68 22.62 0.22 -1.19 16 24 C 0.14 1.50 11.17 84.64 0.95 2.45 16 25 N -0.52 -8.88 10.35 -197.08 -2.04 -10.92 16 26 C 0.29 4.82 8.41 84.74 0.71 5.53 16 27 F -0.12 -2.23 17.29 44.97 0.78 -1.45 16 28 C -0.15 -1.90 9.59 22.69 0.22 -1.68 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.04 0.67 7.75 -2.39 -0.02 0.65 16 35 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.35 10.16 8.43 -89.70 -0.76 9.40 16 37 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.40 19.22 7.90 -92.71 -0.73 18.48 16 40 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 41 H 0.41 3.24 6.74 -92.71 -0.63 2.62 16 42 H 0.17 1.58 7.74 -2.91 -0.02 1.55 16 43 H 0.21 0.64 8.06 -2.91 -0.02 0.62 16 44 H 0.17 1.19 6.53 -2.91 -0.02 1.17 16 Total: -1.00 -74.48 385.01 -0.32 -74.80 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -1.04 Total: 32.97 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 6.58 Total: 20.49 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -8.55 Total: -124.68 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -0.11 Total: -46.87 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.78 Total: -1.45 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -74.48 -0.32 -74.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667994675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.432 kcal (2) G-P(sol) polarization free energy of solvation -74.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds