Wall clock time and date at job start Tue Mar 31 2020 20:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46905 * 109.47325 * 175.00015 * 4 2 1 6 6 C 1.46899 * 111.00405 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47325 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99687 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00001 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99931 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99837 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00009 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00039 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47314 * 60.00210 * 14 12 10 16 16 H 1.48495 * 109.47076 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47022 * 299.99884 * 14 12 10 18 18 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 19 19 C 1.34769 * 119.99686 * 84.99974 * 18 2 1 20 20 O 1.21275 * 120.00678 * 0.02562 * 19 18 2 21 21 C 1.50701 * 119.99690 * 179.97438 * 19 18 2 22 22 C 1.50704 * 109.47153 * 179.97438 * 21 19 18 23 23 C 1.38236 * 119.58826 * 124.72701 * 22 21 19 24 24 C 1.38583 * 119.19016 * 179.77366 * 23 22 21 25 25 C 1.38882 * 118.39820 * 0.49436 * 24 23 22 26 26 F 1.35105 * 120.44241 * 179.77313 * 25 24 23 27 27 C 1.38418 * 119.11279 * 359.75002 * 25 24 23 28 28 N 1.31844 * 119.59369 * 305.00212 * 22 21 19 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 33 33 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 34 34 H 1.00899 * 110.99764 * 303.95647 * 5 4 2 35 35 H 1.09006 * 109.46590 * 299.99952 * 6 5 4 36 36 H 1.08996 * 109.46962 * 59.99644 * 6 5 4 37 37 H 0.96996 * 120.00362 * 0.02562 * 9 7 6 38 38 H 0.97000 * 119.99614 * 179.97438 * 13 12 10 39 39 H 0.97000 * 119.99634 * 265.00306 * 18 2 1 40 40 H 1.08996 * 109.47353 * 300.00507 * 21 19 18 41 41 H 1.09006 * 109.47337 * 60.00072 * 21 19 18 42 42 H 1.08007 * 120.40116 * 0.02562 * 23 22 21 43 43 H 1.08003 * 120.80169 * 180.22172 * 24 23 22 44 44 H 1.07998 * 119.63750 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5316 -1.6044 2.2810 8 8 6.1066 -1.1395 1.3195 9 7 6.2353 -2.2001 3.2640 10 6 7.6012 -2.2801 3.1775 11 1 8.1133 -1.8654 2.3218 12 6 8.3268 -2.8938 4.1912 13 7 7.7038 -3.3970 5.2331 14 14 10.1879 -3.0022 4.0737 15 1 10.7599 -1.6337 4.0011 16 1 10.7198 -3.6985 5.2725 17 1 10.5635 -3.7611 2.8537 18 7 2.0184 -0.6906 -1.1962 19 6 2.1472 -0.0183 -2.3570 20 8 1.8592 1.1585 -2.4115 21 6 2.6501 -0.7285 -3.5873 22 6 2.7001 0.2396 -4.7412 23 6 3.8849 0.4196 -5.4303 24 6 3.9203 1.3084 -6.4930 25 6 2.7580 1.9953 -6.8186 26 9 2.7473 2.8751 -7.8439 27 6 1.6107 1.7662 -6.0790 28 7 1.6148 0.9085 -5.0774 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7516 -0.1583 2.1369 33 1 1.6053 -1.7198 1.2952 34 1 3.7996 -1.2884 0.3435 35 1 3.7556 -0.9587 3.2721 36 1 3.6093 -2.5199 2.4296 37 1 5.7754 -2.5722 4.0326 38 1 8.2103 -3.8257 5.9405 39 1 2.2491 -1.6318 -1.1525 40 1 3.6494 -1.1204 -3.3977 41 1 1.9779 -1.5509 -3.8325 42 1 4.7710 -0.1289 -5.1465 43 1 4.8310 1.4665 -7.0516 44 1 0.7022 2.2961 -6.3246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669595987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:45 Heat of formation + Delta-G solvation = -82.157177 kcal Electronic energy + Delta-G solvation = -27843.820272 eV Core-core repulsion = 23517.606241 eV Total energy + Delta-G solvation = -4326.214031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.27016 -40.71193 -39.55293 -38.32182 -36.70836 -34.27291 -33.65064 -33.12294 -32.78708 -31.29507 -31.06534 -28.10877 -27.61476 -25.05362 -24.29499 -23.42394 -23.01510 -21.33736 -20.47720 -19.29094 -18.02049 -17.92441 -17.74221 -17.18226 -16.80320 -16.14594 -16.07201 -15.91167 -15.40777 -15.21158 -14.61016 -14.51205 -14.37075 -14.20128 -14.07053 -13.91074 -13.55127 -13.36601 -13.20211 -13.07285 -12.74423 -12.61707 -12.35850 -12.16880 -11.92956 -11.70682 -11.63116 -11.48362 -11.07025 -10.97023 -10.46814 -10.24554 -10.24347 -9.98313 -9.77268 -9.53111 -9.15797 -9.10986 -8.50301 -8.11708 -7.99341 -6.44684 -3.85659 0.56241 0.80609 2.64360 2.97130 3.17713 3.23807 3.27968 3.40015 3.66225 3.87022 3.94145 4.03025 4.24495 4.26754 4.41087 4.51662 4.70175 4.86360 4.97786 4.99294 5.07221 5.17473 5.20402 5.21458 5.26948 5.40651 5.43873 5.52918 5.57741 5.61865 5.62600 5.74354 5.92355 5.97847 6.09112 6.22889 6.27463 6.44813 7.12331 7.40808 7.52046 7.57302 7.57860 8.02788 8.21046 8.57882 9.14628 9.50860 10.02181 10.72865 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.002056 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.167849 B =13612.653126 C =15475.051341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.097 0.903 4 C 0.051 3.949 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 N -0.725 5.725 19 C 0.524 3.476 20 O -0.522 6.522 21 C -0.095 4.095 22 C 0.135 3.865 23 C -0.134 4.134 24 C -0.109 4.109 25 C 0.042 3.958 26 F -0.132 7.132 27 C 0.080 3.920 28 N -0.430 5.430 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.032 0.968 34 H 0.347 0.653 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.397 0.603 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.729 2.507 -17.563 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.115 0.885 4 C -0.080 4.080 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.468 6.468 9 N -0.199 5.199 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.378 5.378 19 C 0.309 3.691 20 O -0.397 6.397 21 C -0.135 4.135 22 C -0.003 4.003 23 C -0.154 4.154 24 C -0.135 4.135 25 C 0.020 3.980 26 F -0.111 7.111 27 C -0.079 4.079 28 N -0.137 5.137 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.167 0.833 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.231 0.769 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.166 0.834 43 H 0.166 0.834 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.123 4.110 -17.362 23.389 hybrid contribution 1.337 -1.403 -0.217 1.950 sum -13.786 2.707 -17.579 22.504 Atomic orbital electron populations 1.22144 0.95077 1.02006 1.02760 1.21004 0.93375 0.98426 0.83029 0.88535 1.22309 0.88770 0.98978 0.97903 1.60016 1.07547 1.57490 1.04919 1.21693 0.95130 0.96941 0.94510 1.19797 0.88075 0.84308 0.85341 1.90523 1.71129 1.51539 1.33576 1.41855 1.07405 1.50787 1.19881 1.19647 0.81513 1.35208 1.06608 0.87984 1.25268 1.00719 0.96761 0.95191 1.69603 1.36820 1.38493 1.09346 0.85913 0.82095 0.78627 0.77556 1.19863 1.20972 1.19922 1.45969 1.68139 1.13844 1.09801 1.20095 0.77644 0.87379 0.83936 1.90735 1.48718 1.15678 1.84525 1.20636 1.04971 0.97519 0.90376 1.20640 0.89133 0.95292 0.95271 1.21935 0.99278 0.98739 0.95417 1.21632 0.97921 0.95973 0.97983 1.18865 0.96598 0.93121 0.89404 1.91521 1.97123 1.66223 1.56250 1.22871 0.97214 0.96479 0.91365 1.67486 1.29572 1.04789 1.11880 0.91798 0.92605 0.91516 0.89526 0.94985 0.83314 0.89485 0.93853 0.77452 0.91798 0.76926 0.86607 0.86820 0.83388 0.83403 0.81697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.15 1.60 2.88 -67.93 -0.20 1.41 16 3 H 0.10 1.34 7.58 -51.93 -0.39 0.95 16 4 C 0.05 0.56 5.30 -3.82 -0.02 0.54 16 5 N -0.67 -10.09 6.12 -115.06 -0.70 -10.80 16 6 C 0.05 0.83 6.17 -4.98 -0.03 0.80 16 7 C 0.44 10.09 7.82 -10.99 -0.09 10.00 16 8 O -0.58 -15.48 15.78 5.55 0.09 -15.39 16 9 N -0.56 -13.95 5.29 -10.97 -0.06 -14.01 16 10 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 11 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.14 13.05 55.50 0.72 -23.42 16 14 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 18 N -0.72 -7.28 4.36 -53.80 -0.23 -7.51 16 19 C 0.52 6.20 7.73 -10.99 -0.08 6.12 16 20 O -0.52 -8.39 15.00 5.56 0.08 -8.30 16 21 C -0.09 -0.79 6.10 -29.03 -0.18 -0.97 16 22 C 0.14 1.40 5.76 -82.59 -0.48 0.92 16 23 C -0.13 -1.15 9.71 -39.45 -0.38 -1.53 16 24 C -0.11 -0.92 10.16 -39.22 -0.40 -1.32 16 25 C 0.04 0.40 7.35 -39.28 -0.29 0.11 16 26 F -0.13 -1.30 17.28 2.25 0.04 -1.26 16 27 C 0.08 0.82 11.17 -17.47 -0.20 0.62 16 28 N -0.43 -5.12 9.22 -9.42 -0.09 -5.20 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.35 5.26 7.28 -39.29 -0.29 4.97 16 35 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.40 3.04 8.15 -40.82 -0.33 2.71 16 40 H 0.12 0.72 7.87 -51.93 -0.41 0.31 16 41 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.15 0.89 7.95 -52.48 -0.42 0.47 16 43 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 44 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 385.22 15.07 5.81 5.81 Total: -1.00 -35.22 385.22 -7.49 -42.71 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -5.90 Total: 13.97 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -2.22 Total: 7.68 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.36 Total: -60.94 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: 0.17 Total: -23.69 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.22 -7.49 -42.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669595987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.450 kcal (2) G-P(sol) polarization free energy of solvation -35.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds