Wall clock time and date at job start Tue Mar 31 2020 20:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46905 * 109.47325 * 175.00015 * 4 2 1 6 6 C 1.46899 * 111.00405 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47325 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99687 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00001 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99931 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99837 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00009 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00039 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47314 * 60.00210 * 14 12 10 16 16 H 1.48495 * 109.47076 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47022 * 299.99884 * 14 12 10 18 18 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 19 19 C 1.34769 * 119.99686 * 84.99974 * 18 2 1 20 20 O 1.21275 * 120.00678 * 0.02562 * 19 18 2 21 21 C 1.50701 * 119.99690 * 179.97438 * 19 18 2 22 22 C 1.50704 * 109.47153 * 179.97438 * 21 19 18 23 23 C 1.38236 * 119.58826 * 124.72701 * 22 21 19 24 24 C 1.38583 * 119.19016 * 179.77366 * 23 22 21 25 25 C 1.38882 * 118.39820 * 0.49436 * 24 23 22 26 26 F 1.35105 * 120.44241 * 179.77313 * 25 24 23 27 27 C 1.38418 * 119.11279 * 359.75002 * 25 24 23 28 28 N 1.31844 * 119.59369 * 305.00212 * 22 21 19 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 33 33 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 34 34 H 1.00899 * 110.99764 * 303.95647 * 5 4 2 35 35 H 1.09006 * 109.46590 * 299.99952 * 6 5 4 36 36 H 1.08996 * 109.46962 * 59.99644 * 6 5 4 37 37 H 0.96996 * 120.00362 * 0.02562 * 9 7 6 38 38 H 0.97000 * 119.99614 * 179.97438 * 13 12 10 39 39 H 0.97000 * 119.99634 * 265.00306 * 18 2 1 40 40 H 1.08996 * 109.47353 * 300.00507 * 21 19 18 41 41 H 1.09006 * 109.47337 * 60.00072 * 21 19 18 42 42 H 1.08007 * 120.40116 * 0.02562 * 23 22 21 43 43 H 1.08003 * 120.80169 * 180.22172 * 24 23 22 44 44 H 1.07998 * 119.63750 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5316 -1.6044 2.2810 8 8 6.1066 -1.1395 1.3195 9 7 6.2353 -2.2001 3.2640 10 6 7.6012 -2.2801 3.1775 11 1 8.1133 -1.8654 2.3218 12 6 8.3268 -2.8938 4.1912 13 7 7.7038 -3.3970 5.2331 14 14 10.1879 -3.0022 4.0737 15 1 10.7599 -1.6337 4.0011 16 1 10.7198 -3.6985 5.2725 17 1 10.5635 -3.7611 2.8537 18 7 2.0184 -0.6906 -1.1962 19 6 2.1472 -0.0183 -2.3570 20 8 1.8592 1.1585 -2.4115 21 6 2.6501 -0.7285 -3.5873 22 6 2.7001 0.2396 -4.7412 23 6 3.8849 0.4196 -5.4303 24 6 3.9203 1.3084 -6.4930 25 6 2.7580 1.9953 -6.8186 26 9 2.7473 2.8751 -7.8439 27 6 1.6107 1.7662 -6.0790 28 7 1.6148 0.9085 -5.0774 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7516 -0.1583 2.1369 33 1 1.6053 -1.7198 1.2952 34 1 3.7996 -1.2884 0.3435 35 1 3.7556 -0.9587 3.2721 36 1 3.6093 -2.5199 2.4296 37 1 5.7754 -2.5722 4.0326 38 1 8.2103 -3.8257 5.9405 39 1 2.2491 -1.6318 -1.1525 40 1 3.6494 -1.1204 -3.3977 41 1 1.9779 -1.5509 -3.8325 42 1 4.7710 -0.1289 -5.1465 43 1 4.8310 1.4665 -7.0516 44 1 0.7022 2.2961 -6.3246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669595987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:44 Heat of formation + Delta-G solvation = -109.438834 kcal Electronic energy + Delta-G solvation = -27845.003293 eV Core-core repulsion = 23517.606241 eV Total energy + Delta-G solvation = -4327.397053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.01577 -41.47550 -40.46035 -40.04094 -37.80240 -36.00127 -35.01559 -33.88457 -33.48507 -33.23309 -31.98590 -28.97072 -28.80739 -26.67860 -25.01146 -24.66618 -23.85774 -22.17634 -21.36854 -21.04208 -19.89117 -18.74443 -18.53300 -18.13265 -17.72559 -17.44928 -16.93511 -16.76448 -16.72120 -16.32945 -16.13297 -15.92115 -15.36988 -15.20214 -15.10463 -14.94165 -14.79120 -14.32428 -14.15645 -13.96797 -13.93072 -13.56431 -13.43020 -13.11297 -13.04127 -13.00609 -12.89138 -12.76702 -12.57002 -12.41194 -12.11787 -11.90952 -11.48246 -10.96008 -10.87078 -10.54242 -10.33808 -10.01991 -9.99575 -9.84757 -9.28812 -8.44966 -5.93389 -0.15540 0.12227 1.40979 1.43290 1.53716 1.76927 2.07826 2.18863 2.30369 2.66591 2.92477 2.96649 3.22715 3.25701 3.53818 3.61097 3.77012 3.83878 3.90893 4.03795 4.23257 4.30585 4.33097 4.41101 4.49998 4.53397 4.61767 4.62887 4.70286 4.75113 4.79121 4.84040 4.87099 4.96815 5.12874 5.30240 5.42497 5.59433 5.60529 5.89339 6.11143 6.43713 6.61819 6.62374 6.85423 7.14586 7.37400 7.58857 8.14083 8.71982 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.002056 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.167849 B =13612.653126 C =15475.051341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.149 3.851 3 H 0.061 0.939 4 C 0.058 3.942 5 N -0.687 5.687 6 C 0.065 3.935 7 C 0.436 3.564 8 O -0.623 6.623 9 N -0.573 5.573 10 C -0.333 4.333 11 H 0.079 0.921 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.991 3.009 15 H -0.274 1.274 16 H -0.272 1.272 17 H -0.270 1.270 18 N -0.716 5.716 19 C 0.518 3.482 20 O -0.572 6.572 21 C -0.090 4.090 22 C 0.116 3.884 23 C -0.134 4.134 24 C -0.108 4.108 25 C 0.031 3.969 26 F -0.136 7.136 27 C 0.065 3.935 28 N -0.460 5.460 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.345 0.655 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.411 0.589 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.176 0.824 43 H 0.173 0.827 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.716 0.963 -17.288 22.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.044 3.956 3 H 0.079 0.921 4 C -0.071 4.071 5 N -0.320 5.320 6 C -0.067 4.067 7 C 0.224 3.776 8 O -0.510 6.510 9 N -0.210 5.210 10 C -0.463 4.463 11 H 0.097 0.903 12 C -0.213 4.213 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.200 1.200 16 H -0.196 1.196 17 H -0.195 1.195 18 N -0.369 5.369 19 C 0.304 3.696 20 O -0.451 6.451 21 C -0.129 4.129 22 C -0.022 4.022 23 C -0.153 4.153 24 C -0.134 4.134 25 C 0.010 3.990 26 F -0.115 7.115 27 C -0.094 4.094 28 N -0.169 5.169 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.165 0.835 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.247 0.753 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.193 0.807 43 H 0.190 0.810 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -15.139 2.528 -17.067 22.953 hybrid contribution 1.289 -0.889 -0.319 1.598 sum -13.850 1.639 -17.386 22.289 Atomic orbital electron populations 1.22044 0.93510 1.03084 1.02340 1.20890 0.94459 0.96733 0.83533 0.92086 1.22335 0.86241 1.00554 0.98016 1.59978 1.10185 1.57621 1.04243 1.21545 0.90189 0.99170 0.95818 1.20928 0.90726 0.82118 0.83830 1.90493 1.72850 1.52684 1.34956 1.41927 1.06817 1.51614 1.20674 1.19610 0.83130 1.36806 1.06706 0.90345 1.26020 1.04792 0.95926 0.94574 1.69661 1.38287 1.38473 1.09619 0.85011 0.76975 0.78510 0.77993 1.19967 1.19621 1.19503 1.45913 1.67355 1.14433 1.09163 1.20726 0.76801 0.86956 0.85075 1.90713 1.51033 1.17952 1.85385 1.20744 1.06822 0.97357 0.88023 1.21067 0.89488 0.95647 0.96033 1.22260 0.99579 0.98564 0.94911 1.21976 0.98321 0.95211 0.97928 1.18977 0.97082 0.93489 0.89477 1.91507 1.97171 1.66414 1.56381 1.23095 0.98122 0.96701 0.91449 1.67474 1.30888 1.05816 1.12673 0.93839 0.90663 0.90356 0.88734 0.92110 0.83508 0.87908 0.90830 0.76937 0.91340 0.75263 0.84054 0.84276 0.80658 0.80955 0.80696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.48 71.98 0.68 -1.89 16 2 C 0.15 3.11 2.88 44.99 0.13 3.24 16 3 H 0.06 1.73 7.58 -2.39 -0.02 1.72 16 4 C 0.06 1.12 5.30 86.30 0.46 1.58 16 5 N -0.69 -19.49 6.12 -517.93 -3.17 -22.66 16 6 C 0.07 2.02 6.17 85.56 0.53 2.55 16 7 C 0.44 19.82 7.82 87.66 0.69 20.51 16 8 O -0.62 -33.32 15.78 -3.07 -0.05 -33.37 16 9 N -0.57 -28.39 5.29 -307.00 -1.62 -30.01 16 10 C -0.33 -18.46 9.68 84.04 0.81 -17.65 16 11 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 12 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 13 N -0.92 -48.57 13.05 21.66 0.28 -48.29 16 14 Si 0.99 42.07 29.55 68.60 2.03 44.10 16 15 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 16 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 N -0.72 -13.46 4.36 -442.54 -1.93 -15.39 16 19 C 0.52 12.04 7.73 87.66 0.68 12.71 16 20 O -0.57 -18.99 15.00 -3.01 -0.05 -19.03 16 21 C -0.09 -1.37 6.10 29.10 0.18 -1.19 16 22 C 0.12 2.33 5.76 42.56 0.25 2.57 16 23 C -0.13 -2.10 9.71 22.35 0.22 -1.88 16 24 C -0.11 -1.71 10.16 22.51 0.23 -1.48 16 25 C 0.03 0.60 7.35 22.47 0.17 0.77 16 26 F -0.14 -2.67 17.28 44.97 0.78 -1.89 16 27 C 0.07 1.38 11.17 84.73 0.95 2.33 16 28 N -0.46 -11.16 9.22 -183.71 -1.69 -12.85 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.35 9.89 7.28 -89.69 -0.65 9.24 16 35 H 0.10 2.92 8.14 -2.38 -0.02 2.90 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 37 H 0.40 18.58 7.90 -92.71 -0.73 17.85 16 38 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 39 H 0.41 5.35 8.15 -92.71 -0.76 4.59 16 40 H 0.14 1.39 7.87 -2.39 -0.02 1.37 16 41 H 0.14 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.18 1.66 7.95 -2.91 -0.02 1.63 16 43 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 44 H 0.18 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -78.57 385.22 -0.07 -78.65 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: -1.07 Total: 38.83 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: 6.42 Total: 21.92 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -8.13 Total: -129.20 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -0.09 Total: -52.41 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -78.57 -0.07 -78.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669595987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.793 kcal (2) G-P(sol) polarization free energy of solvation -78.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds