Wall clock time and date at job start Tue Mar 31 2020 20:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46806 * 2 1 4 4 C 1.50700 * 109.46812 * 119.99674 * 2 1 3 5 5 O 1.21283 * 119.99583 * 120.00372 * 4 2 1 6 6 N 1.34778 * 120.00345 * 299.99959 * 4 2 1 7 7 C 1.46494 * 120.00055 * 180.02562 * 6 4 2 8 8 C 1.53007 * 109.47317 * 176.56951 * 7 6 4 9 9 N 1.46497 * 109.53798 * 54.54225 * 8 7 6 10 10 C 1.36933 * 120.00480 * 62.02777 * 9 8 7 11 11 H 1.08003 * 119.99695 * 354.00415 * 10 9 8 12 12 C 1.38815 * 120.00473 * 174.00911 * 10 9 8 13 13 N 1.31617 * 119.99772 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00126 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47306 * 59.99431 * 14 12 10 16 16 H 1.48496 * 109.47079 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46866 * 299.99694 * 14 12 10 18 18 C 1.53177 * 109.53936 * 294.36901 * 8 7 6 19 19 C 1.53108 * 109.15470 * 183.23959 * 18 8 7 20 20 O 1.42899 * 109.48635 * 57.47372 * 19 18 8 21 21 C 1.42904 * 114.09606 * 298.88627 * 20 19 18 22 22 C 1.53092 * 109.41661 * 61.16346 * 21 20 19 23 23 C 1.50696 * 109.47210 * 240.00058 * 2 1 3 24 24 C 1.38419 * 122.54129 * 120.00202 * 23 2 1 25 25 C 1.33394 * 114.92257 * 179.72754 * 24 23 2 26 26 S 1.75884 * 109.59220 * 0.02562 * 25 24 23 27 27 C 1.33390 * 122.53454 * 299.70871 * 23 2 1 28 28 H 1.08997 * 109.47243 * 300.00087 * 1 2 3 29 29 H 1.09006 * 109.46859 * 60.00093 * 1 2 3 30 30 H 1.08999 * 109.47370 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99462 * 0.02562 * 6 4 2 32 32 H 1.09004 * 109.47268 * 296.57023 * 7 6 4 33 33 H 1.08995 * 109.47281 * 56.56531 * 7 6 4 34 34 H 0.97003 * 119.99998 * 242.01743 * 9 8 7 35 35 H 0.97003 * 120.00091 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.51993 * 303.05511 * 18 8 7 37 37 H 1.08998 * 109.52495 * 63.24078 * 18 8 7 38 38 H 1.08999 * 109.40055 * 297.49038 * 19 18 8 39 39 H 1.08996 * 109.48957 * 177.50930 * 19 18 8 40 40 H 1.09000 * 109.48290 * 301.17832 * 21 20 19 41 41 H 1.09006 * 109.49147 * 181.14722 * 21 20 19 42 42 H 1.08999 * 109.52765 * 182.48378 * 22 21 20 43 43 H 1.09001 * 109.57469 * 62.32018 * 22 21 20 44 44 H 1.07997 * 122.53867 * 359.70854 * 24 23 2 45 45 H 1.08001 * 125.20325 * 179.97438 * 25 24 23 46 46 H 1.07999 * 125.21038 * 0.24790 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1954 -0.9401 3.6508 8 6 1.7570 -0.1708 4.8986 9 7 0.3040 0.0147 4.8745 10 6 -0.5257 -1.0745 4.8926 11 1 -0.1116 -2.0699 4.8268 12 6 -1.8989 -0.8995 4.9954 13 7 -2.4035 0.3135 5.0760 14 14 -3.0306 -2.3854 5.0208 15 1 -2.6908 -3.2467 6.1818 16 1 -4.4400 -1.9323 5.1369 17 1 -2.8606 -3.1586 3.7644 18 6 2.4476 1.1962 4.9266 19 6 2.0664 1.9253 6.2178 20 8 2.4337 1.1251 7.3434 21 6 1.7809 -0.1451 7.3942 22 6 2.1524 -0.9583 6.1515 23 6 2.0324 -0.7104 -1.2304 24 6 2.8307 -0.0890 -2.1752 25 6 3.1927 -0.8612 -3.2008 26 16 2.5074 -2.4685 -2.9995 27 6 1.7461 -1.9873 -1.4887 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.1487 0.5386 2.5435 32 1 1.7831 -1.9487 3.6823 33 1 3.2836 -0.9933 3.6204 34 1 -0.0704 0.9091 4.8459 35 1 -3.3630 0.4358 5.1482 36 1 3.5285 1.0589 4.8928 37 1 2.1271 1.7840 4.0665 38 1 0.9905 2.0994 6.2312 39 1 2.5897 2.8802 6.2643 40 1 0.7013 0.0020 7.4230 41 1 2.0987 -0.6818 8.2881 42 1 1.6210 -1.9098 6.1664 43 1 3.2270 -1.1413 6.1425 44 1 3.1369 0.9431 -2.0887 45 1 3.8113 -0.5473 -4.0286 46 1 1.1396 -2.6278 -0.8656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671945835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:50 Heat of formation + Delta-G solvation = -60.034189 kcal Electronic energy + Delta-G solvation = -28222.623206 eV Core-core repulsion = 24431.288925 eV Total energy + Delta-G solvation = -3791.334281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31650 -40.47775 -38.69363 -37.22464 -35.13248 -34.29259 -33.43198 -31.97134 -30.93902 -29.74671 -28.16088 -26.25319 -25.91817 -24.54016 -24.11230 -23.03837 -21.13795 -20.16885 -19.58394 -19.07690 -18.68123 -17.97990 -17.17210 -16.98061 -16.71322 -16.45156 -16.14054 -15.80400 -15.73035 -15.37415 -15.21332 -14.79861 -14.44126 -14.16960 -13.99301 -13.71073 -13.65447 -13.52113 -13.24065 -13.18057 -13.12547 -12.93452 -12.82978 -12.68284 -12.51202 -12.33756 -12.26558 -12.10376 -11.74625 -11.59824 -11.39468 -11.12872 -10.99084 -10.69717 -10.31144 -9.87285 -9.64148 -9.28454 -8.96274 -7.90094 -5.16051 0.15072 0.78465 1.11222 1.45089 1.47972 1.51156 1.73621 1.75026 2.48985 2.58274 3.08362 3.42825 3.75017 3.76325 3.85675 3.89488 4.00673 4.12632 4.16537 4.24633 4.30078 4.32102 4.48841 4.53141 4.62041 4.72054 4.77439 4.80358 4.83545 4.86134 4.87443 4.90257 5.04806 5.10471 5.16473 5.22044 5.24418 5.29056 5.35394 5.50968 5.59190 5.60703 5.65674 6.31591 6.37637 6.71709 7.36986 7.41624 8.09696 8.37682 9.31492 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011722 B = 0.003586 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.058039 B = 7805.884729 C = 9255.047662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.042 4.042 3 H 0.131 0.869 4 C 0.510 3.490 5 O -0.584 6.584 6 N -0.696 5.696 7 C 0.127 3.873 8 C 0.188 3.812 9 N -0.711 5.711 10 C -0.213 4.213 11 H 0.062 0.938 12 C -0.054 4.054 13 N -0.955 5.955 14 Si 0.944 3.056 15 H -0.285 1.285 16 H -0.299 1.299 17 H -0.291 1.291 18 C -0.142 4.142 19 C 0.064 3.936 20 O -0.398 6.398 21 C 0.076 3.924 22 C -0.150 4.150 23 C -0.095 4.095 24 C -0.135 4.135 25 C -0.210 4.210 26 S 0.087 5.913 27 C -0.201 4.201 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.407 0.593 32 H 0.032 0.968 33 H 0.062 0.938 34 H 0.378 0.622 35 H 0.248 0.752 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.112 0.888 40 H 0.036 0.964 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.165 0.835 45 H 0.193 0.807 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.231 4.071 -11.499 16.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.066 4.066 3 H 0.149 0.851 4 C 0.296 3.704 5 O -0.464 6.464 6 N -0.346 5.346 7 C 0.001 3.999 8 C 0.098 3.902 9 N -0.352 5.352 10 C -0.346 4.346 11 H 0.080 0.920 12 C -0.247 4.247 13 N -0.606 5.606 14 Si 0.776 3.224 15 H -0.212 1.212 16 H -0.225 1.225 17 H -0.218 1.218 18 C -0.180 4.180 19 C -0.013 4.013 20 O -0.317 6.317 21 C -0.001 4.001 22 C -0.190 4.190 23 C -0.107 4.107 24 C -0.165 4.165 25 C -0.345 4.345 26 S 0.350 5.650 27 C -0.337 4.337 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.244 0.756 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.212 0.788 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.056 0.944 39 H 0.130 0.870 40 H 0.054 0.946 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.182 0.818 45 H 0.210 0.790 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.827 1.916 -12.257 17.140 hybrid contribution -1.865 0.400 0.986 2.147 sum 9.962 2.316 -11.271 15.220 Atomic orbital electron populations 1.21734 0.91549 1.02127 1.03722 1.19993 0.97613 1.00665 0.88325 0.85087 1.20969 0.79676 0.84326 0.85408 1.90650 1.40330 1.28069 1.87369 1.45710 1.52246 1.31907 1.04713 1.21608 0.97288 0.95507 0.85526 1.19996 0.84433 0.94203 0.91614 1.42467 0.99299 1.05526 1.87885 1.19103 0.87852 0.87991 1.39606 0.92028 1.25108 0.97968 0.97472 1.04170 1.69724 1.11252 1.20381 1.59232 0.85670 0.78767 0.80485 0.77497 1.21204 1.22497 1.21790 1.22303 1.01219 0.95486 0.98984 1.22592 0.99500 0.94202 0.84974 1.87797 1.68185 1.29261 1.46456 1.22349 0.96242 0.83732 0.97747 1.22421 1.00942 0.99530 0.96146 1.18591 1.00965 0.93954 0.97207 1.20270 0.99739 1.02558 0.93888 1.25872 1.07966 0.95668 1.04993 1.84094 1.47867 1.14371 1.18656 1.25378 1.07547 0.99662 1.01108 0.91607 0.89438 0.94042 0.75604 0.94990 0.91937 0.78773 0.94300 0.89518 0.89803 0.94396 0.86992 0.94605 0.88485 0.92265 0.90572 0.81784 0.79034 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.92 71.98 0.64 -2.70 16 2 C -0.04 -1.06 2.97 -12.29 -0.04 -1.09 16 3 H 0.13 2.45 8.03 -2.38 -0.02 2.43 16 4 C 0.51 16.60 7.05 87.66 0.62 17.22 16 5 O -0.58 -23.30 15.22 -3.04 -0.05 -23.35 16 6 N -0.70 -22.12 5.02 -463.06 -2.33 -24.44 16 7 C 0.13 4.38 4.36 86.38 0.38 4.76 16 8 C 0.19 6.29 0.41 3.72 0.00 6.29 16 9 N -0.71 -29.39 3.60 -302.80 -1.09 -30.48 16 10 C -0.21 -10.40 8.67 84.03 0.73 -9.67 16 11 H 0.06 3.08 6.78 -2.91 -0.02 3.06 16 12 C -0.05 -2.82 5.50 84.86 0.47 -2.35 16 13 N -0.96 -52.71 13.07 21.65 0.28 -52.42 16 14 Si 0.94 44.35 29.55 68.60 2.03 46.38 16 15 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 16 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 17 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 18 C -0.14 -3.86 4.80 30.69 0.15 -3.71 16 19 C 0.06 1.84 6.67 72.02 0.48 2.32 16 20 O -0.40 -12.95 10.77 -148.98 -1.60 -14.55 16 21 C 0.08 2.56 6.68 72.01 0.48 3.04 16 22 C -0.15 -4.98 4.79 30.68 0.15 -4.84 16 23 C -0.09 -2.42 4.29 -20.92 -0.09 -2.51 16 24 C -0.13 -2.75 9.92 21.22 0.21 -2.54 16 25 C -0.21 -3.93 11.23 66.72 0.75 -3.18 16 26 S 0.09 1.95 23.34 -56.49 -1.32 0.63 16 27 C -0.20 -5.66 9.25 66.72 0.62 -5.04 16 28 H 0.06 1.74 7.56 -2.39 -0.02 1.72 16 29 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.04 1.19 7.76 -2.39 -0.02 1.17 16 31 H 0.41 12.24 6.84 -92.71 -0.63 11.60 16 32 H 0.03 1.30 7.47 -2.39 -0.02 1.28 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.38 16.80 6.82 -92.71 -0.63 16.17 16 35 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 36 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.08 2.06 7.40 -2.39 -0.02 2.04 16 38 H 0.04 1.27 7.15 -2.39 -0.02 1.25 16 39 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.04 1.45 7.75 -2.39 -0.02 1.43 16 41 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 42 H 0.06 2.17 7.20 -2.39 -0.02 2.15 16 43 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 45 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 46 H 0.14 4.41 7.95 -2.91 -0.02 4.38 16 Total: -1.00 -62.78 379.41 1.20 -61.58 By element: Atomic # 1 Polarization: 40.93 SS G_CDS: -0.27 Total: 40.66 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 5.54 Total: -4.01 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -3.13 Total: -107.35 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -1.65 Total: -37.90 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.32 Total: 0.63 kcal Total: -62.78 1.20 -61.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671945835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.547 kcal (2) G-P(sol) polarization free energy of solvation -62.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds