Wall clock time and date at job start Tue Mar 31 2020 20:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47537 * 2 1 4 4 C 1.50700 * 109.46959 * 239.99876 * 2 1 3 5 5 O 1.21288 * 120.00427 * 240.00214 * 4 2 1 6 6 N 1.34778 * 119.99949 * 60.27897 * 4 2 1 7 7 C 1.46504 * 120.00305 * 179.72215 * 6 4 2 8 8 C 1.52993 * 109.47109 * 175.67914 * 7 6 4 9 9 N 1.46497 * 109.54385 * 305.05748 * 8 7 6 10 10 C 1.36937 * 120.00225 * 301.75521 * 9 8 7 11 11 H 1.08002 * 119.99646 * 353.47123 * 10 9 8 12 12 C 1.38808 * 120.00200 * 173.47361 * 10 9 8 13 13 N 1.31625 * 119.99831 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00149 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47252 * 90.00028 * 14 12 10 16 16 H 1.48496 * 109.47191 * 210.00162 * 14 12 10 17 17 H 1.48500 * 109.47095 * 330.00068 * 14 12 10 18 18 C 1.53180 * 109.54320 * 184.88280 * 8 7 6 19 19 C 1.53098 * 109.15777 * 183.24079 * 18 8 7 20 20 O 1.42907 * 109.48711 * 57.47472 * 19 18 8 21 21 C 1.42899 * 114.09721 * 298.88402 * 20 19 18 22 22 C 1.53098 * 109.40993 * 61.16116 * 21 20 19 23 23 C 1.50705 * 109.47148 * 120.00405 * 2 1 3 24 24 C 1.33387 * 125.20211 * 239.71644 * 23 2 1 25 25 C 1.38425 * 114.91822 * 179.85638 * 24 23 2 26 26 C 1.33390 * 114.92163 * 0.43029 * 25 24 23 27 27 S 1.75881 * 109.59415 * 359.77262 * 26 25 24 28 28 H 1.08999 * 109.47537 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46906 * 299.99975 * 1 2 3 30 30 H 1.08999 * 109.46984 * 59.99451 * 1 2 3 31 31 H 0.97001 * 119.99595 * 359.72805 * 6 4 2 32 32 H 1.09001 * 109.46894 * 295.68002 * 7 6 4 33 33 H 1.09001 * 109.46812 * 55.67532 * 7 6 4 34 34 H 0.97001 * 120.00219 * 121.75195 * 9 8 7 35 35 H 0.96999 * 119.99815 * 179.97438 * 13 12 10 36 36 H 1.09007 * 109.51963 * 303.05895 * 18 8 7 37 37 H 1.08997 * 109.52635 * 63.24346 * 18 8 7 38 38 H 1.09000 * 109.40790 * 297.48858 * 19 18 8 39 39 H 1.09008 * 109.49118 * 177.50547 * 19 18 8 40 40 H 1.09001 * 109.48416 * 301.18251 * 21 20 19 41 41 H 1.09003 * 109.49101 * 181.14462 * 21 20 19 42 42 H 1.09006 * 109.51888 * 182.48421 * 22 21 20 43 43 H 1.08995 * 109.57453 * 62.33160 * 22 21 20 44 44 H 1.07997 * 122.53781 * 0.02562 * 24 23 2 45 45 H 1.08006 * 122.53480 * 180.20239 * 25 24 23 46 46 H 1.07997 * 125.20092 * 179.74610 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6966 -1.1193 6 7 1.7113 -0.2467 -2.4546 7 6 2.2046 -0.9338 -3.6508 8 6 1.6124 -0.2748 -4.8981 9 7 0.1511 -0.2563 -4.7957 10 6 -0.5397 -1.4293 -4.6469 11 1 -0.0200 -2.3738 -4.7107 12 6 -1.9079 -1.4042 -4.4142 13 7 -2.5720 -2.5317 -4.2718 14 14 -2.8068 0.2295 -4.3033 15 1 -3.2803 0.6267 -5.6535 16 1 -3.9705 0.0934 -3.3909 17 1 -1.8841 1.2674 -3.7772 18 6 2.0289 -1.0655 -6.1421 19 6 1.4999 -0.3538 -7.3902 20 8 1.9998 0.9846 -7.4236 21 6 1.6010 1.7844 -6.3086 22 6 2.1359 1.1598 -5.0172 23 6 2.0323 -0.7105 1.2305 24 6 2.8068 -0.1663 2.1702 25 6 3.1408 -1.0131 3.2131 26 6 2.6449 -2.2476 3.1156 27 16 1.6932 -2.3863 1.6431 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.1537 0.5420 -2.5435 32 1 3.2919 -0.8666 -3.6859 33 1 1.9062 -1.9816 -3.6169 34 1 -0.3271 0.5868 -4.8332 35 1 -3.5280 -2.5142 -4.1088 36 1 3.1164 -1.1226 -6.1902 37 1 1.6124 -2.0714 -6.0908 38 1 0.4105 -0.3344 -7.3617 39 1 1.8308 -0.8878 -8.2811 40 1 0.5128 1.8317 -6.2659 41 1 2.0046 2.7908 -6.4200 42 1 1.7957 1.7439 -4.1620 43 1 3.2255 1.1492 -5.0408 44 1 3.1453 0.8581 2.1225 45 1 3.7592 -0.6991 4.0410 46 1 2.8038 -3.0406 3.8313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671946058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:31 Heat of formation + Delta-G solvation = -36.795358 kcal Electronic energy + Delta-G solvation = -28337.934110 eV Core-core repulsion = 24547.607540 eV Total energy + Delta-G solvation = -3790.326570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.94084 -39.10930 -37.56766 -35.96661 -33.89339 -33.34737 -32.15360 -30.80498 -29.88873 -28.57042 -26.94134 -24.68752 -23.92345 -23.37195 -22.85066 -21.85802 -19.90899 -19.28292 -18.67166 -17.90460 -17.39095 -16.45459 -15.77585 -15.62710 -15.59635 -15.24563 -14.99481 -14.54946 -14.43312 -14.16558 -13.59884 -13.48843 -13.19620 -12.95728 -12.79096 -12.60274 -12.45135 -12.34874 -12.12755 -12.00425 -11.98529 -11.66236 -11.44563 -11.35802 -11.07604 -11.02435 -10.96681 -10.47396 -10.43789 -10.19536 -9.91806 -9.71102 -9.47496 -9.20850 -8.95117 -8.56231 -8.50196 -8.21280 -7.44077 -5.87347 -3.26255 1.11082 1.80818 2.21601 2.80059 3.01359 3.21154 3.26103 3.34862 3.66570 4.21381 4.45741 4.58954 4.94321 4.96933 5.05105 5.10661 5.13509 5.16189 5.29286 5.32036 5.40801 5.52807 5.56045 5.57164 5.59748 5.77103 5.82254 5.86398 5.93299 5.98080 6.11835 6.13813 6.15902 6.22574 6.25798 6.36481 6.42093 6.50387 6.55479 6.58504 6.66949 6.94887 7.55068 7.85234 7.95261 8.30067 8.63104 9.05689 9.77390 9.95429 11.30299 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012801 B = 0.003887 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.827937 B = 7202.536665 C = 8304.466445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 H 0.108 0.892 4 C 0.513 3.487 5 O -0.538 6.538 6 N -0.699 5.699 7 C 0.122 3.878 8 C 0.196 3.804 9 N -0.738 5.738 10 C -0.241 4.241 11 H 0.092 0.908 12 C 0.013 3.987 13 N -0.927 5.927 14 Si 0.875 3.125 15 H -0.285 1.285 16 H -0.291 1.291 17 H -0.278 1.278 18 C -0.154 4.154 19 C 0.069 3.931 20 O -0.391 6.391 21 C 0.066 3.934 22 C -0.156 4.156 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.138 4.138 26 C -0.233 4.233 27 S 0.154 5.846 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.397 0.603 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.360 0.640 35 H 0.260 0.740 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.545 8.432 8.001 15.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.065 4.065 3 H 0.126 0.874 4 C 0.297 3.703 5 O -0.415 6.415 6 N -0.349 5.349 7 C -0.004 4.004 8 C 0.104 3.896 9 N -0.381 5.381 10 C -0.370 4.370 11 H 0.109 0.891 12 C -0.183 4.183 13 N -0.574 5.574 14 Si 0.706 3.294 15 H -0.212 1.212 16 H -0.218 1.218 17 H -0.204 1.204 18 C -0.194 4.194 19 C -0.008 4.008 20 O -0.310 6.310 21 C -0.011 4.011 22 C -0.194 4.194 23 C -0.268 4.268 24 C -0.178 4.178 25 C -0.169 4.169 26 C -0.370 4.370 27 S 0.419 5.581 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.232 0.768 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.241 6.341 7.282 13.366 hybrid contribution -0.451 2.426 1.026 2.672 sum 8.790 8.767 8.308 14.939 Atomic orbital electron populations 1.21851 0.91412 1.03887 1.03047 1.19829 0.97841 0.99468 0.89342 0.87438 1.20239 0.80734 0.84833 0.84500 1.90704 1.38218 1.25966 1.86626 1.45628 1.52521 1.31687 1.05064 1.21745 0.96313 0.98055 0.84253 1.19793 0.85097 0.92405 0.92279 1.42838 1.00064 1.06192 1.89056 1.18889 0.90597 0.85883 1.41649 0.89063 1.24641 0.96424 0.95789 1.01475 1.69689 1.08021 1.24424 1.55231 0.86728 0.80022 0.84874 0.77826 1.21183 1.21782 1.20394 1.22466 0.99815 1.01325 0.95776 1.22480 0.99310 0.81659 0.97316 1.87827 1.75236 1.23755 1.44152 1.22446 0.98949 0.93897 0.85823 1.22419 1.01503 0.96998 0.98457 1.23983 1.05005 0.97823 1.00010 1.19992 1.01255 1.01412 0.95116 1.20007 1.03304 0.93259 1.00337 1.25719 1.06996 1.01456 1.02783 1.84566 1.48949 1.09321 1.15225 0.91361 0.91360 0.90952 0.76786 0.92929 0.90729 0.80606 0.93003 0.92294 0.89909 0.91691 0.89941 0.93124 0.89752 0.91324 0.90645 0.84782 0.84848 0.82325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.01 37.16 0.33 -1.63 16 2 C -0.04 -0.57 3.10 -92.92 -0.29 -0.86 16 3 H 0.11 1.17 8.08 -51.93 -0.42 0.75 16 4 C 0.51 8.73 7.12 -10.98 -0.08 8.66 16 5 O -0.54 -10.97 15.25 5.55 0.08 -10.89 16 6 N -0.70 -11.36 5.06 -60.29 -0.31 -11.66 16 7 C 0.12 2.11 4.30 -4.04 -0.02 2.09 16 8 C 0.20 3.22 0.41 -131.64 -0.05 3.16 16 9 N -0.74 -14.51 3.58 -47.07 -0.17 -14.68 16 10 C -0.24 -5.92 9.18 -15.06 -0.14 -6.06 16 11 H 0.09 2.51 6.99 -52.49 -0.37 2.14 16 12 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 13 N -0.93 -27.34 13.97 55.49 0.78 -26.56 16 14 Si 0.88 20.09 27.67 -169.99 -4.70 15.39 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.28 -5.74 6.62 56.52 0.37 -5.37 16 18 C -0.15 -2.50 4.84 -26.59 -0.13 -2.63 16 19 C 0.07 1.10 6.68 37.21 0.25 1.35 16 20 O -0.39 -6.16 10.77 -35.23 -0.38 -6.54 16 21 C 0.07 0.91 6.67 37.21 0.25 1.16 16 22 C -0.16 -2.11 4.80 -26.59 -0.13 -2.24 16 23 C -0.15 -2.13 4.60 -36.00 -0.17 -2.30 16 24 C -0.15 -1.83 10.01 -41.21 -0.41 -2.25 16 25 C -0.14 -1.61 10.18 -41.21 -0.42 -2.03 16 26 C -0.23 -2.85 11.23 29.04 0.33 -2.52 16 27 S 0.15 2.28 22.18 -107.50 -2.38 -0.10 16 28 H 0.07 1.07 8.00 -51.93 -0.42 0.66 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.99 7.57 -51.93 -0.39 0.59 16 31 H 0.40 5.92 6.73 -40.82 -0.27 5.65 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.54 7.50 -51.93 -0.39 1.15 16 34 H 0.36 7.04 4.63 -40.82 -0.19 6.85 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.50 7.17 -51.93 -0.37 1.13 16 38 H 0.06 1.17 7.75 -51.93 -0.40 0.77 16 39 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 40 H 0.05 0.75 7.06 -51.93 -0.37 0.38 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.85 7.20 -51.93 -0.37 0.47 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 46 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 376.98 15.07 5.68 5.68 Total: -1.00 -30.80 376.98 -9.10 -39.90 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -6.93 Total: 15.31 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.77 Total: -5.84 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.30 Total: -52.91 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.29 Total: -17.43 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.70 Total: 15.39 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.38 Total: -0.10 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.80 -9.10 -39.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671946058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.105 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds