Wall clock time and date at job start Tue Mar 31 2020 20:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47537 * 2 1 4 4 C 1.50700 * 109.46959 * 239.99876 * 2 1 3 5 5 O 1.21288 * 120.00427 * 240.00214 * 4 2 1 6 6 N 1.34778 * 119.99949 * 60.27897 * 4 2 1 7 7 C 1.46504 * 120.00305 * 179.72215 * 6 4 2 8 8 C 1.52993 * 109.47109 * 175.67914 * 7 6 4 9 9 N 1.46497 * 109.54385 * 305.05748 * 8 7 6 10 10 C 1.36937 * 120.00225 * 301.75521 * 9 8 7 11 11 H 1.08002 * 119.99646 * 353.47123 * 10 9 8 12 12 C 1.38808 * 120.00200 * 173.47361 * 10 9 8 13 13 N 1.31625 * 119.99831 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00149 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47252 * 90.00028 * 14 12 10 16 16 H 1.48496 * 109.47191 * 210.00162 * 14 12 10 17 17 H 1.48500 * 109.47095 * 330.00068 * 14 12 10 18 18 C 1.53180 * 109.54320 * 184.88280 * 8 7 6 19 19 C 1.53098 * 109.15777 * 183.24079 * 18 8 7 20 20 O 1.42907 * 109.48711 * 57.47472 * 19 18 8 21 21 C 1.42899 * 114.09721 * 298.88402 * 20 19 18 22 22 C 1.53098 * 109.40993 * 61.16116 * 21 20 19 23 23 C 1.50705 * 109.47148 * 120.00405 * 2 1 3 24 24 C 1.33387 * 125.20211 * 239.71644 * 23 2 1 25 25 C 1.38425 * 114.91822 * 179.85638 * 24 23 2 26 26 C 1.33390 * 114.92163 * 0.43029 * 25 24 23 27 27 S 1.75881 * 109.59415 * 359.77262 * 26 25 24 28 28 H 1.08999 * 109.47537 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46906 * 299.99975 * 1 2 3 30 30 H 1.08999 * 109.46984 * 59.99451 * 1 2 3 31 31 H 0.97001 * 119.99595 * 359.72805 * 6 4 2 32 32 H 1.09001 * 109.46894 * 295.68002 * 7 6 4 33 33 H 1.09001 * 109.46812 * 55.67532 * 7 6 4 34 34 H 0.97001 * 120.00219 * 121.75195 * 9 8 7 35 35 H 0.96999 * 119.99815 * 179.97438 * 13 12 10 36 36 H 1.09007 * 109.51963 * 303.05895 * 18 8 7 37 37 H 1.08997 * 109.52635 * 63.24346 * 18 8 7 38 38 H 1.09000 * 109.40790 * 297.48858 * 19 18 8 39 39 H 1.09008 * 109.49118 * 177.50547 * 19 18 8 40 40 H 1.09001 * 109.48416 * 301.18251 * 21 20 19 41 41 H 1.09003 * 109.49101 * 181.14462 * 21 20 19 42 42 H 1.09006 * 109.51888 * 182.48421 * 22 21 20 43 43 H 1.08995 * 109.57453 * 62.33160 * 22 21 20 44 44 H 1.07997 * 122.53781 * 0.02562 * 24 23 2 45 45 H 1.08006 * 122.53480 * 180.20239 * 25 24 23 46 46 H 1.07997 * 125.20092 * 179.74610 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6966 -1.1193 6 7 1.7113 -0.2467 -2.4546 7 6 2.2046 -0.9338 -3.6508 8 6 1.6124 -0.2748 -4.8981 9 7 0.1511 -0.2563 -4.7957 10 6 -0.5397 -1.4293 -4.6469 11 1 -0.0200 -2.3738 -4.7107 12 6 -1.9079 -1.4042 -4.4142 13 7 -2.5720 -2.5317 -4.2718 14 14 -2.8068 0.2295 -4.3033 15 1 -3.2803 0.6267 -5.6535 16 1 -3.9705 0.0934 -3.3909 17 1 -1.8841 1.2674 -3.7772 18 6 2.0289 -1.0655 -6.1421 19 6 1.4999 -0.3538 -7.3902 20 8 1.9998 0.9846 -7.4236 21 6 1.6010 1.7844 -6.3086 22 6 2.1359 1.1598 -5.0172 23 6 2.0323 -0.7105 1.2305 24 6 2.8068 -0.1663 2.1702 25 6 3.1408 -1.0131 3.2131 26 6 2.6449 -2.2476 3.1156 27 16 1.6932 -2.3863 1.6431 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.1537 0.5420 -2.5435 32 1 3.2919 -0.8666 -3.6859 33 1 1.9062 -1.9816 -3.6169 34 1 -0.3271 0.5868 -4.8332 35 1 -3.5280 -2.5142 -4.1088 36 1 3.1164 -1.1226 -6.1902 37 1 1.6124 -2.0714 -6.0908 38 1 0.4105 -0.3344 -7.3617 39 1 1.8308 -0.8878 -8.2811 40 1 0.5128 1.8317 -6.2659 41 1 2.0046 2.7908 -6.4200 42 1 1.7957 1.7439 -4.1620 43 1 3.2255 1.1492 -5.0408 44 1 3.1453 0.8581 2.1225 45 1 3.7592 -0.6991 4.0410 46 1 2.8038 -3.0406 3.8313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671946058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:30 Heat of formation + Delta-G solvation = -57.565471 kcal Electronic energy + Delta-G solvation = -28338.834770 eV Core-core repulsion = 24547.607540 eV Total energy + Delta-G solvation = -3791.227230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.27932 -40.38729 -38.58237 -37.36929 -35.24124 -34.81500 -33.77461 -32.01671 -31.64258 -29.59080 -28.26551 -25.85154 -25.59100 -24.58265 -24.10610 -23.11807 -21.22651 -20.23032 -20.10068 -19.79453 -18.59714 -17.64211 -17.04747 -16.97543 -16.78708 -16.49206 -16.24125 -16.21711 -15.76064 -15.50730 -14.99009 -14.80038 -14.55586 -14.27493 -14.13498 -13.98575 -13.65994 -13.54191 -13.26091 -13.18069 -13.12758 -12.94898 -12.90684 -12.68497 -12.57834 -12.43992 -12.19733 -12.10451 -11.72669 -11.56012 -11.47613 -11.17303 -10.98379 -10.78577 -10.38502 -9.93058 -9.55715 -9.31458 -9.29936 -7.95119 -5.30789 0.12451 0.79411 1.23615 1.36505 1.42041 1.49902 1.68814 1.86030 2.40251 2.51961 3.04329 3.35440 3.46292 3.53306 3.80066 3.82999 3.92290 4.05371 4.08998 4.19221 4.23689 4.29453 4.42457 4.56718 4.63739 4.70000 4.70302 4.75081 4.77219 4.78357 4.84928 4.86636 4.99992 5.07140 5.14661 5.18483 5.23353 5.25564 5.27914 5.39916 5.57447 5.65771 5.85365 6.26208 6.34028 6.64445 7.13063 7.32263 7.83669 8.05055 9.26438 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012801 B = 0.003887 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.827937 B = 7202.536665 C = 8304.466445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.032 4.032 3 H 0.148 0.852 4 C 0.505 3.495 5 O -0.578 6.578 6 N -0.694 5.694 7 C 0.130 3.870 8 C 0.193 3.807 9 N -0.732 5.732 10 C -0.203 4.203 11 H 0.049 0.951 12 C -0.059 4.059 13 N -0.986 5.986 14 Si 0.940 3.060 15 H -0.287 1.287 16 H -0.307 1.307 17 H -0.233 1.233 18 C -0.152 4.152 19 C 0.076 3.924 20 O -0.394 6.394 21 C 0.059 3.941 22 C -0.147 4.147 23 C -0.167 4.167 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.224 4.224 27 S 0.063 5.937 28 H 0.034 0.966 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.407 0.593 32 H 0.067 0.933 33 H 0.027 0.973 34 H 0.367 0.633 35 H 0.253 0.747 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.039 0.961 39 H 0.098 0.902 40 H 0.041 0.959 41 H 0.119 0.881 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.166 0.834 45 H 0.168 0.832 46 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.587 12.934 9.126 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.055 4.055 3 H 0.165 0.835 4 C 0.291 3.709 5 O -0.458 6.458 6 N -0.344 5.344 7 C 0.004 3.996 8 C 0.103 3.897 9 N -0.376 5.376 10 C -0.334 4.334 11 H 0.067 0.933 12 C -0.250 4.250 13 N -0.637 5.637 14 Si 0.768 3.232 15 H -0.214 1.214 16 H -0.235 1.235 17 H -0.157 1.157 18 C -0.192 4.192 19 C -0.001 4.001 20 O -0.313 6.313 21 C -0.017 4.017 22 C -0.185 4.185 23 C -0.285 4.285 24 C -0.167 4.167 25 C -0.169 4.169 26 C -0.359 4.359 27 S 0.328 5.672 28 H 0.053 0.947 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.243 0.757 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.202 0.798 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.116 0.884 40 H 0.060 0.940 41 H 0.137 0.863 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.183 0.817 45 H 0.185 0.815 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 11.337 10.914 8.398 17.838 hybrid contribution -0.927 0.948 0.690 1.495 sum 10.410 11.862 9.088 18.212 Atomic orbital electron populations 1.21824 0.91551 1.02108 1.04310 1.19851 0.97544 1.00816 0.87272 0.83453 1.20960 0.79956 0.84414 0.85536 1.90686 1.40107 1.27724 1.87243 1.45591 1.52440 1.31712 1.04668 1.21559 0.97156 0.95670 0.85196 1.19994 0.82969 0.95084 0.91660 1.42703 1.01543 1.04620 1.88689 1.18656 0.90323 0.86192 1.38237 0.93290 1.25382 0.97509 0.99345 1.02730 1.69901 1.07864 1.27445 1.58513 0.85645 0.78718 0.81511 0.77332 1.21413 1.23504 1.15651 1.22428 1.00958 0.99696 0.96151 1.22357 0.97676 0.82439 0.97648 1.87835 1.75079 1.23234 1.45188 1.22687 0.98731 0.95143 0.85141 1.22393 1.02501 0.94171 0.99399 1.24059 1.06733 0.96649 1.01066 1.20433 0.99315 1.02768 0.94167 1.20445 1.02876 0.92643 1.00929 1.25972 1.05937 1.02658 1.01342 1.84909 1.51522 1.12247 1.18542 0.94696 0.88788 0.90863 0.75662 0.91473 0.95497 0.79812 0.93860 0.90230 0.93035 0.94285 0.88380 0.94041 0.86319 0.89142 0.88813 0.81668 0.81474 0.80123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.01 71.98 0.65 -3.00 16 2 C -0.03 -0.82 3.10 -12.29 -0.04 -0.86 16 3 H 0.15 2.56 8.08 -2.39 -0.02 2.54 16 4 C 0.51 16.99 7.12 87.66 0.62 17.61 16 5 O -0.58 -24.18 15.25 -3.05 -0.05 -24.23 16 6 N -0.69 -21.79 5.06 -463.05 -2.34 -24.13 16 7 C 0.13 4.50 4.30 86.38 0.37 4.87 16 8 C 0.19 6.13 0.41 3.72 0.00 6.13 16 9 N -0.73 -28.31 3.58 -302.83 -1.08 -29.39 16 10 C -0.20 -10.36 9.18 84.03 0.77 -9.59 16 11 H 0.05 2.91 6.99 -2.91 -0.02 2.88 16 12 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 13 N -0.99 -61.46 13.97 21.65 0.30 -61.15 16 14 Si 0.94 41.56 27.67 68.60 1.90 43.46 16 15 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 16 H -0.31 -14.41 7.11 99.48 0.71 -13.70 16 17 H -0.23 -8.46 6.62 99.48 0.66 -7.80 16 18 C -0.15 -4.92 4.84 30.69 0.15 -4.77 16 19 C 0.08 2.34 6.68 72.01 0.48 2.82 16 20 O -0.39 -11.28 10.77 -148.98 -1.60 -12.89 16 21 C 0.06 1.41 6.67 72.01 0.48 1.89 16 22 C -0.15 -3.40 4.80 30.69 0.15 -3.26 16 23 C -0.17 -4.52 4.60 24.59 0.11 -4.41 16 24 C -0.14 -2.94 10.01 21.22 0.21 -2.73 16 25 C -0.14 -2.79 10.18 21.22 0.22 -2.57 16 26 C -0.22 -5.14 11.23 66.72 0.75 -4.39 16 27 S 0.06 1.93 22.18 -56.49 -1.25 0.68 16 28 H 0.03 1.13 8.00 -2.39 -0.02 1.11 16 29 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.07 1.85 7.57 -2.39 -0.02 1.83 16 31 H 0.41 11.05 6.73 -92.71 -0.62 10.43 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.03 1.18 7.50 -2.39 -0.02 1.16 16 34 H 0.37 13.44 4.63 -92.71 -0.43 13.01 16 35 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.05 1.98 7.17 -2.39 -0.02 1.96 16 38 H 0.04 1.40 7.75 -2.39 -0.02 1.38 16 39 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 40 H 0.04 1.07 7.06 -2.39 -0.02 1.06 16 41 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.09 1.76 7.20 -2.38 -0.02 1.74 16 43 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 45 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 46 H 0.18 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -73.07 376.98 1.16 -71.91 By element: Atomic # 1 Polarization: 40.84 SS G_CDS: -0.10 Total: 40.74 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 5.39 Total: -4.99 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -3.12 Total: -114.68 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.65 Total: -37.12 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.90 Total: 43.46 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.25 Total: 0.68 kcal Total: -73.07 1.16 -71.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671946058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.343 kcal (2) G-P(sol) polarization free energy of solvation -73.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds