Wall clock time and date at job start Tue Mar 31 2020 20:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 113.99897 * 2 1 4 4 C 1.50708 * 109.47154 * 179.97438 * 3 2 1 5 5 C 1.33812 * 122.44475 * 89.97574 * 4 3 2 6 6 S 1.70621 * 110.95028 * 180.02562 * 5 4 3 7 7 C 1.75828 * 91.56308 * 359.97438 * 6 5 4 8 8 C 1.46584 * 125.45786 * 180.02562 * 7 6 5 9 9 O 1.21700 * 120.00166 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99755 * 0.02629 * 8 7 6 11 11 C 1.47019 * 125.65046 * 359.97374 * 10 8 7 12 12 C 1.54325 * 107.40226 * 178.90075 * 11 10 8 13 13 C 1.55396 * 102.83054 * 337.97933 * 12 11 10 14 14 H 1.09006 * 110.88862 * 277.26657 * 13 12 11 15 15 C 1.52993 * 111.07412 * 153.48806 * 13 12 11 16 16 H 1.08997 * 109.47374 * 303.67277 * 15 13 12 17 17 C 1.53006 * 109.47238 * 183.67442 * 15 13 12 18 18 N 1.46498 * 109.47209 * 63.67769 * 15 13 12 19 19 C 1.36948 * 119.99751 * 205.00271 * 18 15 13 20 20 H 1.07998 * 119.99961 * 359.97438 * 19 18 15 21 21 C 1.38808 * 119.99750 * 179.97438 * 19 18 15 22 22 N 1.31623 * 120.00030 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99841 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47001 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47267 * 119.99698 * 23 21 19 26 26 H 1.48505 * 109.46876 * 239.99319 * 23 21 19 27 27 C 1.47432 * 125.64557 * 180.02562 * 10 8 7 28 28 C 1.36641 * 109.08287 * 0.26317 * 7 6 5 29 29 H 1.09002 * 109.47386 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47723 * 300.00144 * 1 2 3 31 31 H 1.09005 * 109.47296 * 60.00248 * 1 2 3 32 32 H 1.08999 * 109.47396 * 60.00256 * 3 2 1 33 33 H 1.08994 * 109.47350 * 300.00018 * 3 2 1 34 34 H 1.08002 * 124.52881 * 0.03752 * 5 4 3 35 35 H 1.09004 * 109.88066 * 298.39323 * 11 10 8 36 36 H 1.08992 * 109.88308 * 59.40656 * 11 10 8 37 37 H 1.09003 * 110.71994 * 96.24443 * 12 11 10 38 38 H 1.09001 * 110.72183 * 219.51987 * 12 11 10 39 39 H 1.08995 * 109.47031 * 305.08245 * 17 15 13 40 40 H 1.09000 * 109.46775 * 65.08196 * 17 15 13 41 41 H 1.08998 * 109.47281 * 185.07789 * 17 15 13 42 42 H 0.96998 * 120.00258 * 24.99741 * 18 15 13 43 43 H 0.97003 * 119.99690 * 179.97438 * 22 21 19 44 44 H 1.08990 * 110.36367 * 322.92568 * 27 10 8 45 45 H 1.09002 * 110.36633 * 85.14472 * 27 10 8 46 46 H 1.08006 * 123.34881 * 179.73287 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2286 1.1291 -1.1283 6 16 5.8952 0.9966 -0.7876 7 6 5.5923 1.0221 0.9442 8 6 6.6181 0.9417 1.9882 9 8 6.2957 0.9678 3.1614 10 7 7.9184 0.8390 1.6487 11 6 8.4450 0.7962 0.2767 12 6 9.9823 0.7035 0.3751 13 6 10.2718 1.2663 1.7943 14 1 10.2988 2.3559 1.7823 15 6 11.5744 0.6946 2.3576 16 1 11.5219 -0.3941 2.3610 17 6 11.7767 1.1997 3.7876 18 7 12.6984 1.1268 1.5235 19 6 13.8474 0.3827 1.4838 20 1 13.9250 -0.5224 2.0677 21 6 14.9123 0.7920 0.6930 22 7 14.8175 1.8949 -0.0191 23 14 16.4793 -0.2233 0.6383 24 1 16.3326 -1.4079 1.5215 25 1 16.7300 -0.6720 -0.7549 26 1 17.6213 0.6034 1.1051 27 6 9.0481 0.7498 2.5917 28 6 4.2470 1.1235 1.1610 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8463 -0.8899 34 1 3.8079 1.1624 -2.1225 35 1 8.0535 -0.0781 -0.2435 36 1 8.1617 1.7030 -0.2575 37 1 10.3120 -0.3325 0.2970 38 1 10.4555 1.3187 -0.3903 39 1 11.7390 2.2890 3.7969 40 1 10.9886 0.8034 4.4279 41 1 12.7467 0.8666 4.1568 42 1 12.6288 1.9400 0.9992 43 1 15.5618 2.1811 -0.5714 44 1 8.8674 1.3821 3.4609 45 1 9.2035 -0.2838 2.9009 46 1 3.8049 1.1540 2.1459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672216670.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:12 Heat of formation + Delta-G solvation = -33.998454 kcal Electronic energy + Delta-G solvation = -26417.398105 eV Core-core repulsion = 22627.192818 eV Total energy + Delta-G solvation = -3790.205287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.15569 -39.11726 -37.87752 -36.97928 -35.24760 -32.54122 -31.10403 -30.33558 -29.31410 -28.18612 -27.45963 -26.17860 -25.21051 -23.89568 -22.63425 -21.55032 -20.10545 -19.67241 -19.19606 -18.13299 -17.13932 -16.80466 -16.61016 -16.24145 -16.02804 -15.66182 -15.22195 -14.84397 -14.21346 -13.87006 -13.85369 -13.55365 -13.34252 -13.29152 -13.02673 -12.73720 -12.67366 -12.42393 -12.39637 -12.28909 -12.14998 -11.83784 -11.73878 -11.30626 -10.95553 -10.90414 -10.75450 -10.61353 -10.38035 -10.21005 -10.13058 -10.07754 -9.86218 -9.66140 -9.15844 -8.94034 -8.83259 -8.57291 -6.98509 -5.79200 -3.07566 0.29961 1.25800 1.65541 1.97143 2.87263 3.07903 3.41481 3.47972 3.49564 3.67381 4.32332 4.55028 4.58942 4.67524 4.71398 4.84131 4.91330 4.96023 4.97740 5.01734 5.04753 5.23812 5.27229 5.27610 5.41370 5.51616 5.58491 5.63209 5.85369 5.87049 5.94275 5.96663 6.02763 6.05993 6.18474 6.20964 6.34015 6.42412 6.55266 6.62791 6.72565 6.85525 7.08623 7.42003 7.69195 8.04270 8.39376 9.51063 10.07826 10.42868 11.43412 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027126 B = 0.002110 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.971179 B =13264.072759 C =13933.551938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.123 3.877 4 C -0.124 4.124 5 C -0.231 4.231 6 S 0.238 5.762 7 C -0.263 4.263 8 C 0.603 3.397 9 O -0.535 6.535 10 N -0.611 5.611 11 C 0.083 3.917 12 C -0.109 4.109 13 C -0.102 4.102 14 H 0.082 0.918 15 C 0.185 3.815 16 H 0.050 0.950 17 C -0.168 4.168 18 N -0.722 5.722 19 C -0.235 4.235 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.116 3.884 28 C -0.042 4.042 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.167 0.833 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.038 0.962 41 H 0.056 0.944 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.412 -0.562 -3.199 26.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.044 3.956 4 C -0.137 4.137 5 C -0.369 4.369 6 S 0.508 5.492 7 C -0.383 4.383 8 C 0.391 3.609 9 O -0.414 6.414 10 N -0.344 5.344 11 C -0.041 4.041 12 C -0.147 4.147 13 C -0.122 4.122 14 H 0.101 0.899 15 C 0.075 3.925 16 H 0.068 0.932 17 C -0.228 4.228 18 N -0.363 5.363 19 C -0.366 4.366 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.220 1.220 27 C -0.006 4.006 28 C -0.075 4.075 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.185 0.815 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -25.092 -0.952 -3.476 25.349 hybrid contribution -0.729 0.150 0.424 0.856 sum -25.821 -0.802 -3.052 26.013 Atomic orbital electron populations 1.22764 0.80909 1.02943 1.00014 1.87986 1.19620 1.27483 1.95400 1.21013 0.88514 0.85049 1.01004 1.18368 0.95694 1.07677 0.91996 1.25582 1.01117 1.06935 1.03228 1.83571 1.01661 1.65891 0.98107 1.24538 0.97885 1.18635 0.97281 1.16517 0.80318 0.76858 0.87207 1.90826 1.80772 1.51582 1.18209 1.48390 1.05310 1.72002 1.08740 1.22315 0.97031 1.01584 0.83175 1.22588 0.90462 1.03414 0.98282 1.22739 0.94390 1.00879 0.94221 0.89932 1.20127 0.85677 0.96778 0.89917 0.93187 1.22495 1.00814 1.00842 0.98691 1.42372 1.11983 1.29196 1.52756 1.19265 0.91541 1.04165 1.21666 0.91145 1.24717 0.98439 0.97837 0.99962 1.69667 1.31834 1.23918 1.32690 0.86153 0.83773 0.79289 0.77195 1.20592 1.21943 1.21962 1.22354 0.83953 1.01724 0.92561 1.20536 0.90933 0.96250 0.99781 0.89495 0.93917 0.94049 0.92108 0.92322 0.81535 0.90983 0.90951 0.89874 0.89080 0.93548 0.94343 0.92511 0.78291 0.93618 0.90182 0.90928 0.82976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.71 10.69 -35.23 -0.38 -4.09 16 3 C 0.12 1.00 6.18 36.01 0.22 1.22 16 4 C -0.12 -1.23 5.41 -106.45 -0.58 -1.81 16 5 C -0.23 -2.05 10.67 29.18 0.31 -1.74 16 6 S 0.24 2.26 18.43 -107.50 -1.98 0.28 16 7 C -0.26 -3.31 6.38 -36.79 -0.23 -3.55 16 8 C 0.60 9.14 7.82 -12.89 -0.10 9.04 16 9 O -0.53 -9.72 17.10 5.19 0.09 -9.63 16 10 N -0.61 -8.56 3.33 -172.09 -0.57 -9.13 16 11 C 0.08 0.99 5.17 -3.06 -0.02 0.98 16 12 C -0.11 -1.52 6.21 -24.77 -0.15 -1.68 16 13 C -0.10 -1.55 2.63 -88.34 -0.23 -1.78 16 14 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 15 C 0.19 3.39 2.41 -67.93 -0.16 3.23 16 16 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 17 C -0.17 -2.93 9.23 37.16 0.34 -2.58 16 18 N -0.72 -16.78 4.88 -53.43 -0.26 -17.04 16 19 C -0.24 -6.21 9.93 -15.06 -0.15 -6.36 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -27.15 13.06 55.49 0.72 -26.43 16 23 Si 0.90 21.86 29.55 -169.99 -5.02 16.83 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 C 0.12 1.67 5.52 -2.52 -0.01 1.65 16 28 C -0.04 -0.49 9.80 -40.44 -0.40 -0.89 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 33 H 0.06 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 35 H 0.07 0.77 6.98 -51.93 -0.36 0.41 16 36 H 0.07 0.78 6.82 -51.93 -0.35 0.43 16 37 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 38 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.04 0.57 7.60 -51.93 -0.39 0.17 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.38 9.50 7.80 -40.82 -0.32 9.18 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.08 1.18 8.04 -51.93 -0.42 0.77 16 45 H 0.07 1.02 8.04 -51.93 -0.42 0.61 16 46 H 0.15 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 389.10 15.07 5.86 5.86 Total: -1.00 -32.02 389.10 -8.98 -40.99 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.30 Total: 5.80 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.14 Total: -3.45 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.11 Total: -52.60 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.29 Total: -13.72 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.98 Total: 0.28 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.02 -8.98 -40.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672216670.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.995 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds