Wall clock time and date at job start Tue Mar 31 2020 20:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 113.99897 * 2 1 4 4 C 1.50708 * 109.47154 * 179.97438 * 3 2 1 5 5 C 1.33812 * 122.44475 * 89.97574 * 4 3 2 6 6 S 1.70621 * 110.95028 * 180.02562 * 5 4 3 7 7 C 1.75828 * 91.56308 * 359.97438 * 6 5 4 8 8 C 1.46584 * 125.45786 * 180.02562 * 7 6 5 9 9 O 1.21700 * 120.00166 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99755 * 0.02629 * 8 7 6 11 11 C 1.47019 * 125.65046 * 359.97374 * 10 8 7 12 12 C 1.54325 * 107.40226 * 178.90075 * 11 10 8 13 13 C 1.55396 * 102.83054 * 337.97933 * 12 11 10 14 14 H 1.09006 * 110.88862 * 277.26657 * 13 12 11 15 15 C 1.52993 * 111.07412 * 153.48806 * 13 12 11 16 16 H 1.08997 * 109.47374 * 303.67277 * 15 13 12 17 17 C 1.53006 * 109.47238 * 183.67442 * 15 13 12 18 18 N 1.46498 * 109.47209 * 63.67769 * 15 13 12 19 19 C 1.36948 * 119.99751 * 205.00271 * 18 15 13 20 20 H 1.07998 * 119.99961 * 359.97438 * 19 18 15 21 21 C 1.38808 * 119.99750 * 179.97438 * 19 18 15 22 22 N 1.31623 * 120.00030 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99841 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47001 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47267 * 119.99698 * 23 21 19 26 26 H 1.48505 * 109.46876 * 239.99319 * 23 21 19 27 27 C 1.47432 * 125.64557 * 180.02562 * 10 8 7 28 28 C 1.36641 * 109.08287 * 0.26317 * 7 6 5 29 29 H 1.09002 * 109.47386 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47723 * 300.00144 * 1 2 3 31 31 H 1.09005 * 109.47296 * 60.00248 * 1 2 3 32 32 H 1.08999 * 109.47396 * 60.00256 * 3 2 1 33 33 H 1.08994 * 109.47350 * 300.00018 * 3 2 1 34 34 H 1.08002 * 124.52881 * 0.03752 * 5 4 3 35 35 H 1.09004 * 109.88066 * 298.39323 * 11 10 8 36 36 H 1.08992 * 109.88308 * 59.40656 * 11 10 8 37 37 H 1.09003 * 110.71994 * 96.24443 * 12 11 10 38 38 H 1.09001 * 110.72183 * 219.51987 * 12 11 10 39 39 H 1.08995 * 109.47031 * 305.08245 * 17 15 13 40 40 H 1.09000 * 109.46775 * 65.08196 * 17 15 13 41 41 H 1.08998 * 109.47281 * 185.07789 * 17 15 13 42 42 H 0.96998 * 120.00258 * 24.99741 * 18 15 13 43 43 H 0.97003 * 119.99690 * 179.97438 * 22 21 19 44 44 H 1.08990 * 110.36367 * 322.92568 * 27 10 8 45 45 H 1.09002 * 110.36633 * 85.14472 * 27 10 8 46 46 H 1.08006 * 123.34881 * 179.73287 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2286 1.1291 -1.1283 6 16 5.8952 0.9966 -0.7876 7 6 5.5923 1.0221 0.9442 8 6 6.6181 0.9417 1.9882 9 8 6.2957 0.9678 3.1614 10 7 7.9184 0.8390 1.6487 11 6 8.4450 0.7962 0.2767 12 6 9.9823 0.7035 0.3751 13 6 10.2718 1.2663 1.7943 14 1 10.2988 2.3559 1.7823 15 6 11.5744 0.6946 2.3576 16 1 11.5219 -0.3941 2.3610 17 6 11.7767 1.1997 3.7876 18 7 12.6984 1.1268 1.5235 19 6 13.8474 0.3827 1.4838 20 1 13.9250 -0.5224 2.0677 21 6 14.9123 0.7920 0.6930 22 7 14.8175 1.8949 -0.0191 23 14 16.4793 -0.2233 0.6383 24 1 16.3326 -1.4079 1.5215 25 1 16.7300 -0.6720 -0.7549 26 1 17.6213 0.6034 1.1051 27 6 9.0481 0.7498 2.5917 28 6 4.2470 1.1235 1.1610 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8463 -0.8899 34 1 3.8079 1.1624 -2.1225 35 1 8.0535 -0.0781 -0.2435 36 1 8.1617 1.7030 -0.2575 37 1 10.3120 -0.3325 0.2970 38 1 10.4555 1.3187 -0.3903 39 1 11.7390 2.2890 3.7969 40 1 10.9886 0.8034 4.4279 41 1 12.7467 0.8666 4.1568 42 1 12.6288 1.9400 0.9992 43 1 15.5618 2.1811 -0.5714 44 1 8.8674 1.3821 3.4609 45 1 9.2035 -0.2838 2.9009 46 1 3.8049 1.1540 2.1459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672216670.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:11 Heat of formation + Delta-G solvation = -54.058575 kcal Electronic energy + Delta-G solvation = -26418.267977 eV Core-core repulsion = 22627.192818 eV Total energy + Delta-G solvation = -3791.075159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.28548 -39.89663 -38.99133 -37.77346 -36.80397 -34.28950 -32.33463 -31.36669 -30.80818 -29.10759 -28.52266 -26.81374 -26.41421 -25.49278 -23.73190 -22.89928 -21.13715 -21.00437 -20.03008 -19.26360 -18.90746 -17.60511 -17.38010 -17.31245 -16.99043 -16.58537 -16.29007 -16.05870 -15.59763 -15.41238 -14.94561 -14.72983 -14.63883 -14.18600 -14.07765 -13.96386 -13.80343 -13.65870 -13.47845 -13.22343 -13.04444 -12.98506 -12.90664 -12.79963 -12.35882 -12.26718 -12.12585 -12.00713 -11.85892 -11.56360 -11.54522 -11.37673 -11.23855 -10.90272 -10.64228 -10.10124 -9.71026 -9.47249 -8.94815 -7.88798 -5.15347 -0.54586 0.45176 0.88486 1.15153 1.49930 1.51408 1.60013 1.78606 2.02608 2.59902 3.10915 3.30544 3.45514 3.57955 3.68750 3.83116 3.96320 4.04613 4.15555 4.24217 4.25412 4.33760 4.40881 4.45925 4.51363 4.57169 4.58966 4.60769 4.64708 4.70243 4.76705 4.86408 4.88653 4.95752 5.05422 5.11483 5.18906 5.21455 5.29284 5.32102 5.39166 5.58239 5.62422 6.21383 6.30865 6.34287 6.90973 7.41019 8.16616 8.40537 9.34551 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027126 B = 0.002110 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.971179 B =13264.072759 C =13933.551938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.121 3.879 4 C -0.139 4.139 5 C -0.217 4.217 6 S 0.275 5.725 7 C -0.300 4.300 8 C 0.599 3.401 9 O -0.577 6.577 10 N -0.612 5.612 11 C 0.088 3.912 12 C -0.106 4.106 13 C -0.093 4.093 14 H 0.079 0.921 15 C 0.183 3.817 16 H 0.049 0.951 17 C -0.161 4.161 18 N -0.729 5.729 19 C -0.229 4.229 20 H 0.074 0.926 21 C -0.074 4.074 22 N -0.967 5.967 23 Si 0.964 3.036 24 H -0.269 1.269 25 H -0.295 1.295 26 H -0.299 1.299 27 C 0.121 3.879 28 C -0.043 4.043 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.196 0.804 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.374 0.626 43 H 0.248 0.752 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.079 -1.118 -4.406 28.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.043 3.957 4 C -0.152 4.152 5 C -0.355 4.355 6 S 0.545 5.455 7 C -0.420 4.420 8 C 0.390 3.610 9 O -0.459 6.459 10 N -0.344 5.344 11 C -0.035 4.035 12 C -0.144 4.144 13 C -0.113 4.113 14 H 0.097 0.903 15 C 0.074 3.926 16 H 0.067 0.933 17 C -0.221 4.221 18 N -0.369 5.369 19 C -0.361 4.361 20 H 0.092 0.908 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.794 3.206 24 H -0.193 1.193 25 H -0.222 1.222 26 H -0.227 1.227 27 C -0.001 4.001 28 C -0.077 4.077 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.214 0.786 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.206 0.794 43 H 0.057 0.943 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -26.779 -1.534 -4.671 27.227 hybrid contribution -0.329 0.304 0.804 0.920 sum -27.108 -1.230 -3.868 27.410 Atomic orbital electron populations 1.22934 0.79282 1.03764 1.01135 1.87931 1.21513 1.28402 1.95648 1.21106 0.87287 0.84858 1.02404 1.18530 0.96888 1.08196 0.91553 1.25963 1.00664 1.04558 1.04271 1.83313 1.02051 1.65002 0.95121 1.24401 0.97528 1.21318 0.98751 1.16878 0.80802 0.76033 0.87312 1.90789 1.81429 1.53668 1.20039 1.48411 1.05027 1.71600 1.09388 1.22360 0.95395 1.03282 0.82445 1.22509 0.91966 1.02745 0.97151 1.22519 0.93082 1.00503 0.95175 0.90256 1.20283 0.85619 0.96803 0.89859 0.93289 1.22373 1.00702 1.00705 0.98289 1.42504 1.12557 1.28585 1.53291 1.19588 0.92314 1.03931 1.20228 0.90850 1.25409 1.01353 0.99158 1.00690 1.69802 1.32367 1.25614 1.34014 0.85206 0.80243 0.78190 0.76941 1.19315 1.22238 1.22657 1.22231 0.83739 1.01755 0.92423 1.20670 0.91002 0.95678 1.00334 0.88930 0.93177 0.92521 0.91525 0.90119 0.78641 0.89162 0.89361 0.90441 0.89658 0.93786 0.91615 0.94425 0.79385 0.94259 0.90663 0.90546 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -7.28 10.69 -148.98 -1.59 -8.87 16 3 C 0.12 1.72 6.18 71.24 0.44 2.16 16 4 C -0.14 -2.50 5.41 -21.05 -0.11 -2.61 16 5 C -0.22 -3.18 10.67 66.81 0.71 -2.47 16 6 S 0.28 4.55 18.43 -56.49 -1.04 3.50 16 7 C -0.30 -7.30 6.38 24.07 0.15 -7.14 16 8 C 0.60 18.07 7.82 86.42 0.68 18.75 16 9 O -0.58 -21.41 17.10 -4.35 -0.07 -21.48 16 10 N -0.61 -16.61 3.33 -816.58 -2.72 -19.33 16 11 C 0.09 1.96 5.17 86.73 0.45 2.41 16 12 C -0.11 -2.84 6.21 31.87 0.20 -2.64 16 13 C -0.09 -2.76 2.63 -9.32 -0.02 -2.78 16 14 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 15 C 0.18 6.62 2.41 44.99 0.11 6.72 16 16 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 17 C -0.16 -5.49 9.23 71.98 0.66 -4.82 16 18 N -0.73 -33.96 4.88 -322.94 -1.58 -35.53 16 19 C -0.23 -12.03 9.93 84.03 0.83 -11.20 16 20 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 21 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 22 N -0.97 -56.99 13.06 21.65 0.28 -56.70 16 23 Si 0.96 45.10 29.55 68.60 2.03 47.13 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 26 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 27 C 0.12 3.38 5.52 86.86 0.48 3.86 16 28 C -0.04 -0.97 9.80 21.71 0.21 -0.76 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 33 H 0.08 0.76 8.12 -2.39 -0.02 0.74 16 34 H 0.20 1.70 8.06 -2.91 -0.02 1.67 16 35 H 0.09 1.71 6.98 -2.38 -0.02 1.70 16 36 H 0.09 1.71 6.82 -2.39 -0.02 1.69 16 37 H 0.08 2.18 8.04 -2.39 -0.02 2.16 16 38 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.87 7.60 -2.39 -0.02 1.85 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.37 18.74 7.80 -92.71 -0.72 18.02 16 43 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 44 H 0.07 2.19 8.04 -2.39 -0.02 2.17 16 45 H 0.08 2.08 8.04 -2.39 -0.02 2.07 16 46 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -69.24 389.10 2.07 -67.17 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.25 Total: 26.75 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 6.50 Total: -2.64 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -4.01 Total: -111.56 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -1.67 Total: -30.35 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -1.04 Total: 3.50 kcal Total: -69.24 2.07 -67.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672216670.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.114 kcal (2) G-P(sol) polarization free energy of solvation -69.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds