Wall clock time and date at job start Tue Mar 31 2020 20:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00219 * 2 1 4 4 C 1.50696 * 109.47179 * 179.97438 * 3 2 1 5 5 C 1.33824 * 122.45170 * 90.02371 * 4 3 2 6 6 S 1.70618 * 110.95607 * 179.73130 * 5 4 3 7 7 C 1.75833 * 91.56153 * 359.97438 * 6 5 4 8 8 C 1.46585 * 125.45303 * 179.97438 * 7 6 5 9 9 O 1.21701 * 119.99693 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00393 * 0.02562 * 8 7 6 11 11 C 1.47025 * 125.64468 * 359.69862 * 10 8 7 12 12 C 1.54319 * 107.27492 * 180.96402 * 11 10 8 13 13 C 1.55160 * 102.86247 * 22.52651 * 12 11 10 14 14 H 1.09000 * 111.04084 * 82.38815 * 13 12 11 15 15 C 1.52999 * 111.00173 * 206.23194 * 13 12 11 16 16 H 1.08999 * 109.47694 * 53.64706 * 15 13 12 17 17 C 1.52998 * 109.46971 * 293.64360 * 15 13 12 18 18 N 1.46503 * 109.46980 * 173.64771 * 15 13 12 19 19 C 1.36937 * 119.99906 * 204.99931 * 18 15 13 20 20 H 1.07997 * 120.00179 * 359.97438 * 19 18 15 21 21 C 1.38815 * 119.99852 * 180.02562 * 19 18 15 22 22 N 1.31619 * 119.99922 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99852 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47544 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47168 * 119.99997 * 23 21 19 26 26 H 1.48503 * 109.47329 * 239.99979 * 23 21 19 27 27 C 1.47424 * 125.65362 * 179.97438 * 10 8 7 28 28 C 1.36645 * 109.08392 * 0.02562 * 7 6 5 29 29 H 1.09003 * 109.47338 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46821 * 300.00741 * 1 2 3 31 31 H 1.08998 * 109.46936 * 60.00244 * 1 2 3 32 32 H 1.09000 * 109.47320 * 59.99843 * 3 2 1 33 33 H 1.09003 * 109.47038 * 299.99607 * 3 2 1 34 34 H 1.08000 * 124.51952 * 359.74465 * 5 4 3 35 35 H 1.08999 * 109.88447 * 300.50670 * 11 10 8 36 36 H 1.09003 * 109.88689 * 61.67414 * 11 10 8 37 37 H 1.08999 * 110.92419 * 264.10904 * 12 11 10 38 38 H 1.09001 * 110.74445 * 140.85333 * 12 11 10 39 39 H 1.08999 * 109.47392 * 300.00135 * 17 15 13 40 40 H 1.09003 * 109.46990 * 60.00695 * 17 15 13 41 41 H 1.09002 * 109.47288 * 180.02562 * 17 15 13 42 42 H 0.96996 * 120.00037 * 24.99939 * 18 15 13 43 43 H 0.96999 * 119.99711 * 179.97438 * 22 21 19 44 44 H 1.09004 * 110.36340 * 274.68102 * 27 10 8 45 45 H 1.09000 * 110.36215 * 36.88566 * 27 10 8 46 46 H 1.07999 * 123.34685 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2289 1.1299 -1.1283 6 16 5.8960 1.0052 -0.7876 7 6 5.5932 1.0327 0.9442 8 6 6.6195 0.9576 1.9882 9 8 6.2971 0.9847 3.1614 10 7 7.9200 0.8587 1.6488 11 6 8.4461 0.8095 0.2768 12 6 9.9798 0.6717 0.3787 13 6 10.1794 0.0738 1.7965 14 1 10.0382 -1.0070 1.7889 15 6 11.5547 0.4405 2.3576 16 1 11.6883 1.5214 2.3149 17 6 12.6430 -0.2412 1.5260 18 7 11.6501 -0.0087 3.7489 19 6 12.5139 0.6122 4.6111 20 1 13.1252 1.4327 4.2655 21 6 12.6047 0.1863 5.9291 22 7 11.8600 -0.8140 6.3502 23 14 13.7836 1.0327 7.1051 24 1 14.5001 2.1198 6.3908 25 1 13.0209 1.6073 8.2425 26 1 14.7667 0.0445 7.6173 27 6 9.0503 0.7761 2.5917 28 6 4.2478 1.1341 1.1610 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8078 1.1595 -2.1224 35 1 8.0292 -0.0490 -0.2496 36 1 8.1928 1.7292 -0.2507 37 1 10.4642 1.6449 0.2988 38 1 10.3578 -0.0094 -0.3837 39 1 12.5096 -1.3221 1.5688 40 1 12.5721 0.0931 0.4909 41 1 13.6229 0.0197 1.9259 42 1 11.1013 -0.7458 4.0592 43 1 11.9237 -1.1119 7.2712 44 1 9.3644 1.7747 2.8956 45 1 8.7738 0.1843 3.4642 46 1 3.8062 1.1695 2.1459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672216672.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:17 Heat of formation + Delta-G solvation = -32.723882 kcal Electronic energy + Delta-G solvation = -26542.169382 eV Core-core repulsion = 22752.019364 eV Total energy + Delta-G solvation = -3790.150018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.07244 -39.08876 -37.84152 -36.93667 -35.20592 -32.54401 -31.05868 -30.35850 -28.81877 -28.25054 -27.89183 -26.14028 -24.91997 -23.89127 -22.68304 -21.58585 -20.00089 -19.66768 -19.16019 -18.10632 -17.05666 -16.78321 -16.56586 -16.10872 -15.97217 -15.62252 -15.16545 -14.82206 -14.26696 -13.88450 -13.80607 -13.69476 -13.29475 -13.20457 -13.02780 -12.74966 -12.57845 -12.43509 -12.27510 -12.18327 -12.05509 -11.83883 -11.70838 -11.34620 -10.93286 -10.87458 -10.78297 -10.57984 -10.55220 -10.19443 -10.07748 -9.97615 -9.83234 -9.61184 -9.10389 -8.90136 -8.79541 -8.47914 -6.94467 -5.73641 -3.02854 0.33527 1.27268 1.66172 2.01923 2.97454 3.18650 3.45584 3.50806 3.53431 3.70615 4.36743 4.58418 4.59758 4.62914 4.70910 4.86042 4.89539 4.96672 4.99698 5.01098 5.04025 5.26789 5.30668 5.31540 5.39522 5.56399 5.61232 5.66367 5.86171 5.87775 5.90973 6.00185 6.03217 6.09980 6.16286 6.30379 6.37764 6.39234 6.56232 6.62867 6.75716 6.84939 7.07403 7.54230 7.72842 8.17864 8.44204 9.55707 10.12323 10.46630 11.48854 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019829 B = 0.002315 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.731621 B =12091.336827 C =13128.206736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.122 3.878 4 C -0.122 4.122 5 C -0.232 4.232 6 S 0.227 5.773 7 C -0.257 4.257 8 C 0.599 3.401 9 O -0.525 6.525 10 N -0.614 5.614 11 C 0.087 3.913 12 C -0.118 4.118 13 C -0.102 4.102 14 H 0.082 0.918 15 C 0.185 3.815 16 H 0.050 0.950 17 C -0.164 4.164 18 N -0.724 5.724 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.293 1.293 27 C 0.122 3.878 28 C -0.044 4.044 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.166 0.834 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.054 0.946 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.093 4.378 -21.486 28.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.044 3.956 4 C -0.135 4.135 5 C -0.369 4.369 6 S 0.497 5.503 7 C -0.377 4.377 8 C 0.387 3.613 9 O -0.403 6.403 10 N -0.348 5.348 11 C -0.038 4.038 12 C -0.157 4.157 13 C -0.122 4.122 14 H 0.101 0.899 15 C 0.074 3.926 16 H 0.068 0.932 17 C -0.224 4.224 18 N -0.366 5.366 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.220 1.220 27 C 0.001 3.999 28 C -0.077 4.077 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.184 0.816 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.797 4.258 -21.653 27.733 hybrid contribution -1.174 0.429 1.499 1.952 sum -17.971 4.688 -20.154 27.406 Atomic orbital electron populations 1.22766 0.80904 1.02957 1.00000 1.87990 1.19625 1.27442 1.95397 1.21017 0.88503 0.85085 1.00996 1.18375 0.95703 1.07400 0.92001 1.25522 1.00928 1.07358 1.03140 1.83356 1.01955 1.66555 0.98480 1.24591 0.97968 1.18082 0.97043 1.16523 0.80330 0.77242 0.87234 1.90873 1.80609 1.50730 1.18115 1.48432 1.05553 1.72303 1.08466 1.22183 0.96217 1.01475 0.83907 1.22643 0.92300 1.02487 0.98267 1.22704 0.96090 1.00204 0.93245 0.89935 1.20155 0.89501 0.96932 0.85963 0.93244 1.22442 1.01104 1.00824 0.98036 1.42426 1.49025 1.40584 1.04541 1.19238 1.15045 1.11890 0.90746 0.91156 1.24741 1.00080 0.98744 0.97346 1.69668 1.42716 1.29070 1.16391 0.86155 0.80349 0.78556 0.81334 1.20610 1.21901 1.21974 1.22308 0.83448 1.01713 0.92418 1.20573 0.90991 0.96233 0.99863 0.89480 0.93884 0.94089 0.92060 0.92360 0.81605 0.91020 0.91047 0.90013 0.89749 0.93485 0.94386 0.92736 0.78234 0.93556 0.90699 0.89485 0.82872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.89 10.69 -35.23 -0.38 -4.27 16 3 C 0.12 1.04 6.18 36.00 0.22 1.26 16 4 C -0.12 -1.25 5.41 -106.45 -0.58 -1.83 16 5 C -0.23 -2.05 10.67 29.18 0.31 -1.74 16 6 S 0.23 2.10 18.43 -107.50 -1.98 0.12 16 7 C -0.26 -3.41 6.38 -36.79 -0.23 -3.64 16 8 C 0.60 10.00 7.82 -12.90 -0.10 9.90 16 9 O -0.53 -10.89 17.09 5.19 0.09 -10.80 16 10 N -0.61 -9.30 3.33 -172.08 -0.57 -9.87 16 11 C 0.09 0.96 5.16 -3.07 -0.02 0.94 16 12 C -0.12 -1.31 5.59 -24.90 -0.14 -1.45 16 13 C -0.10 -1.56 2.62 -88.46 -0.23 -1.79 16 14 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 15 C 0.18 3.39 2.40 -67.93 -0.16 3.23 16 16 H 0.05 0.93 8.05 -51.93 -0.42 0.51 16 17 C -0.16 -2.72 9.34 37.16 0.35 -2.37 16 18 N -0.72 -17.47 4.82 -53.42 -0.26 -17.73 16 19 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 23 Si 0.90 22.51 29.55 -169.99 -5.02 17.49 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 C 0.12 2.12 6.09 -2.52 -0.02 2.10 16 28 C -0.04 -0.55 9.79 -40.44 -0.40 -0.94 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 33 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 34 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.07 0.70 6.85 -51.93 -0.36 0.35 16 36 H 0.07 0.67 6.97 -51.93 -0.36 0.31 16 37 H 0.08 0.85 8.01 -51.93 -0.42 0.44 16 38 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.04 0.50 7.50 -51.93 -0.39 0.11 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 43 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.07 1.37 8.04 -51.93 -0.42 0.95 16 45 H 0.09 1.78 8.03 -51.93 -0.42 1.36 16 46 H 0.15 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -33.82 388.92 -8.95 -42.77 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.29 Total: 6.07 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -0.13 Total: -2.12 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.11 Total: -55.11 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.29 Total: -15.07 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.98 Total: 0.12 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.82 -8.95 -42.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672216672.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.043 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds