Wall clock time and date at job start Tue Mar 31 2020 20:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00219 * 2 1 4 4 C 1.50696 * 109.47179 * 179.97438 * 3 2 1 5 5 C 1.33824 * 122.45170 * 90.02371 * 4 3 2 6 6 S 1.70618 * 110.95607 * 179.73130 * 5 4 3 7 7 C 1.75833 * 91.56153 * 359.97438 * 6 5 4 8 8 C 1.46585 * 125.45303 * 179.97438 * 7 6 5 9 9 O 1.21701 * 119.99693 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00393 * 0.02562 * 8 7 6 11 11 C 1.47025 * 125.64468 * 359.69862 * 10 8 7 12 12 C 1.54319 * 107.27492 * 180.96402 * 11 10 8 13 13 C 1.55160 * 102.86247 * 22.52651 * 12 11 10 14 14 H 1.09000 * 111.04084 * 82.38815 * 13 12 11 15 15 C 1.52999 * 111.00173 * 206.23194 * 13 12 11 16 16 H 1.08999 * 109.47694 * 53.64706 * 15 13 12 17 17 C 1.52998 * 109.46971 * 293.64360 * 15 13 12 18 18 N 1.46503 * 109.46980 * 173.64771 * 15 13 12 19 19 C 1.36937 * 119.99906 * 204.99931 * 18 15 13 20 20 H 1.07997 * 120.00179 * 359.97438 * 19 18 15 21 21 C 1.38815 * 119.99852 * 180.02562 * 19 18 15 22 22 N 1.31619 * 119.99922 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99852 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47544 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47168 * 119.99997 * 23 21 19 26 26 H 1.48503 * 109.47329 * 239.99979 * 23 21 19 27 27 C 1.47424 * 125.65362 * 179.97438 * 10 8 7 28 28 C 1.36645 * 109.08392 * 0.02562 * 7 6 5 29 29 H 1.09003 * 109.47338 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46821 * 300.00741 * 1 2 3 31 31 H 1.08998 * 109.46936 * 60.00244 * 1 2 3 32 32 H 1.09000 * 109.47320 * 59.99843 * 3 2 1 33 33 H 1.09003 * 109.47038 * 299.99607 * 3 2 1 34 34 H 1.08000 * 124.51952 * 359.74465 * 5 4 3 35 35 H 1.08999 * 109.88447 * 300.50670 * 11 10 8 36 36 H 1.09003 * 109.88689 * 61.67414 * 11 10 8 37 37 H 1.08999 * 110.92419 * 264.10904 * 12 11 10 38 38 H 1.09001 * 110.74445 * 140.85333 * 12 11 10 39 39 H 1.08999 * 109.47392 * 300.00135 * 17 15 13 40 40 H 1.09003 * 109.46990 * 60.00695 * 17 15 13 41 41 H 1.09002 * 109.47288 * 180.02562 * 17 15 13 42 42 H 0.96996 * 120.00037 * 24.99939 * 18 15 13 43 43 H 0.96999 * 119.99711 * 179.97438 * 22 21 19 44 44 H 1.09004 * 110.36340 * 274.68102 * 27 10 8 45 45 H 1.09000 * 110.36215 * 36.88566 * 27 10 8 46 46 H 1.07999 * 123.34685 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2289 1.1299 -1.1283 6 16 5.8960 1.0052 -0.7876 7 6 5.5932 1.0327 0.9442 8 6 6.6195 0.9576 1.9882 9 8 6.2971 0.9847 3.1614 10 7 7.9200 0.8587 1.6488 11 6 8.4461 0.8095 0.2768 12 6 9.9798 0.6717 0.3787 13 6 10.1794 0.0738 1.7965 14 1 10.0382 -1.0070 1.7889 15 6 11.5547 0.4405 2.3576 16 1 11.6883 1.5214 2.3149 17 6 12.6430 -0.2412 1.5260 18 7 11.6501 -0.0087 3.7489 19 6 12.5139 0.6122 4.6111 20 1 13.1252 1.4327 4.2655 21 6 12.6047 0.1863 5.9291 22 7 11.8600 -0.8140 6.3502 23 14 13.7836 1.0327 7.1051 24 1 14.5001 2.1198 6.3908 25 1 13.0209 1.6073 8.2425 26 1 14.7667 0.0445 7.6173 27 6 9.0503 0.7761 2.5917 28 6 4.2478 1.1341 1.1610 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8078 1.1595 -2.1224 35 1 8.0292 -0.0490 -0.2496 36 1 8.1928 1.7292 -0.2507 37 1 10.4642 1.6449 0.2988 38 1 10.3578 -0.0094 -0.3837 39 1 12.5096 -1.3221 1.5688 40 1 12.5721 0.0931 0.4909 41 1 13.6229 0.0197 1.9259 42 1 11.1013 -0.7458 4.0592 43 1 11.9237 -1.1119 7.2712 44 1 9.3644 1.7747 2.8956 45 1 8.7738 0.1843 3.4642 46 1 3.8062 1.1695 2.1459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672216672.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:17 Heat of formation + Delta-G solvation = -55.867566 kcal Electronic energy + Delta-G solvation = -26543.172967 eV Core-core repulsion = 22752.019364 eV Total energy + Delta-G solvation = -3791.153603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.28383 -39.90199 -39.00940 -37.78308 -36.81414 -34.33816 -32.37256 -31.48783 -30.10748 -29.68027 -28.63322 -26.76101 -26.10800 -25.69183 -23.70643 -22.95201 -21.09607 -21.00764 -20.03494 -19.36645 -18.81451 -17.58337 -17.35300 -17.28225 -17.02379 -16.60166 -16.30319 -16.10220 -15.61287 -15.43822 -15.17263 -14.70832 -14.50472 -14.32929 -14.03116 -13.95247 -13.77331 -13.58553 -13.41580 -13.11765 -13.05167 -13.00091 -12.91486 -12.79318 -12.36094 -12.29431 -12.15540 -12.04572 -11.82294 -11.64927 -11.52085 -11.38149 -11.22741 -10.93950 -10.65030 -10.10762 -9.70334 -9.44861 -8.97658 -7.91719 -5.19078 -0.55593 0.44151 0.87411 1.14740 1.46000 1.47348 1.56618 1.79469 2.02083 2.57047 3.10783 3.32998 3.43114 3.57855 3.71898 3.85745 3.96022 4.03865 4.18004 4.19659 4.24256 4.36360 4.40132 4.50463 4.52929 4.56274 4.59961 4.61189 4.64745 4.77427 4.84828 4.87646 4.89089 4.94407 5.09104 5.12619 5.19044 5.20182 5.29643 5.33609 5.42643 5.55433 5.68080 6.20832 6.30644 6.35342 6.92705 7.36280 8.14755 8.35033 9.32227 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019829 B = 0.002315 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.731621 B =12091.336827 C =13128.206736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.121 3.879 4 C -0.141 4.141 5 C -0.215 4.215 6 S 0.300 5.700 7 C -0.302 4.302 8 C 0.590 3.410 9 O -0.588 6.588 10 N -0.613 5.613 11 C 0.080 3.920 12 C -0.105 4.105 13 C -0.093 4.093 14 H 0.078 0.922 15 C 0.178 3.822 16 H 0.049 0.951 17 C -0.153 4.153 18 N -0.739 5.739 19 C -0.227 4.227 20 H 0.079 0.921 21 C -0.083 4.083 22 N -0.972 5.972 23 Si 0.968 3.032 24 H -0.262 1.262 25 H -0.300 1.300 26 H -0.295 1.295 27 C 0.126 3.874 28 C -0.049 4.049 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.202 0.798 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.040 0.960 40 H 0.084 0.916 41 H 0.033 0.967 42 H 0.369 0.631 43 H 0.247 0.753 44 H 0.058 0.942 45 H 0.039 0.961 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.095 5.427 -26.375 32.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.043 3.957 4 C -0.153 4.153 5 C -0.353 4.353 6 S 0.570 5.430 7 C -0.421 4.421 8 C 0.381 3.619 9 O -0.471 6.471 10 N -0.345 5.345 11 C -0.043 4.043 12 C -0.143 4.143 13 C -0.113 4.113 14 H 0.096 0.904 15 C 0.070 3.930 16 H 0.067 0.933 17 C -0.212 4.212 18 N -0.379 5.379 19 C -0.360 4.360 20 H 0.097 0.903 21 C -0.274 4.274 22 N -0.624 5.624 23 Si 0.798 3.202 24 H -0.187 1.187 25 H -0.228 1.228 26 H -0.223 1.223 27 C 0.003 3.997 28 C -0.083 4.083 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.219 0.781 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.139 0.861 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.053 0.947 42 H 0.200 0.800 43 H 0.056 0.944 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.766 5.339 -26.648 31.934 hybrid contribution -1.254 0.133 2.874 3.139 sum -18.020 5.472 -23.774 30.330 Atomic orbital electron populations 1.22936 0.79292 1.03759 1.01130 1.87934 1.21519 1.28447 1.95645 1.21111 0.87366 0.84842 1.02357 1.18478 0.96853 1.08482 0.91497 1.26001 1.00863 1.04247 1.04173 1.82874 1.01691 1.64760 0.93682 1.24357 0.97169 1.21274 0.99331 1.17125 0.81258 0.76173 0.87387 1.90819 1.81682 1.53664 1.20920 1.48485 1.04676 1.71477 1.09892 1.22532 0.96291 1.03742 0.81687 1.22706 0.92344 1.03736 0.95528 1.22526 0.93076 0.99880 0.95807 0.90383 1.20443 0.92036 0.96973 0.83516 0.93255 1.22271 0.98689 1.00224 1.00046 1.42684 1.48239 1.40057 1.06880 1.19650 1.14115 1.11056 0.91133 0.90329 1.25539 1.02466 1.00098 0.99342 1.69836 1.45102 1.31243 1.16207 0.85141 0.78258 0.77817 0.79013 1.18652 1.22798 1.22287 1.22040 0.85336 1.00105 0.92196 1.20668 0.91294 0.96031 1.00287 0.88950 0.93421 0.92259 0.91984 0.89709 0.78134 0.88958 0.88413 0.88543 0.86141 0.94049 0.89729 0.94737 0.79957 0.94387 0.92383 0.94254 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.83 10.69 -148.98 -1.59 -9.42 16 3 C 0.12 1.85 6.18 71.23 0.44 2.29 16 4 C -0.14 -2.67 5.41 -21.05 -0.11 -2.78 16 5 C -0.21 -2.98 10.67 66.82 0.71 -2.27 16 6 S 0.30 4.46 18.43 -56.49 -1.04 3.42 16 7 C -0.30 -7.97 6.38 24.08 0.15 -7.82 16 8 C 0.59 20.75 7.82 86.42 0.68 21.42 16 9 O -0.59 -26.81 17.09 -4.35 -0.07 -26.88 16 10 N -0.61 -18.77 3.33 -816.56 -2.72 -21.49 16 11 C 0.08 1.51 5.16 86.73 0.45 1.96 16 12 C -0.11 -1.89 5.59 31.78 0.18 -1.72 16 13 C -0.09 -2.76 2.62 -9.39 -0.02 -2.78 16 14 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 15 C 0.18 6.42 2.40 44.99 0.11 6.53 16 16 H 0.05 1.79 8.05 -2.39 -0.02 1.77 16 17 C -0.15 -4.70 9.34 71.98 0.67 -4.03 16 18 N -0.74 -36.64 4.82 -322.94 -1.56 -38.19 16 19 C -0.23 -12.58 9.93 84.03 0.83 -11.74 16 20 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 21 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 22 N -0.97 -61.66 13.06 21.65 0.28 -61.38 16 23 Si 0.97 47.43 29.55 68.60 2.03 49.45 16 24 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 26 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 27 C 0.13 4.59 6.09 86.86 0.53 5.12 16 28 C -0.05 -1.24 9.79 21.71 0.21 -1.03 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 33 H 0.08 0.82 8.12 -2.39 -0.02 0.80 16 34 H 0.20 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.09 1.41 6.85 -2.39 -0.02 1.39 16 36 H 0.10 1.39 6.97 -2.39 -0.02 1.37 16 37 H 0.10 1.54 8.01 -2.39 -0.02 1.52 16 38 H 0.12 1.42 8.13 -2.39 -0.02 1.40 16 39 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.83 7.50 -2.39 -0.02 1.81 16 41 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.37 20.28 7.80 -92.71 -0.72 19.56 16 43 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.06 2.26 8.04 -2.39 -0.02 2.24 16 45 H 0.04 1.78 8.03 -2.39 -0.02 1.76 16 46 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -80.65 388.92 2.13 -78.52 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.26 Total: 25.66 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 6.54 Total: 0.30 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -3.99 Total: -121.06 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.67 Total: -36.30 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.45 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -1.04 Total: 3.42 kcal Total: -80.65 2.13 -78.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672216672.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.652 kcal (2) G-P(sol) polarization free energy of solvation -80.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds