Wall clock time and date at job start Tue Mar 31 2020 20:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99784 * 2 1 4 4 C 1.50706 * 109.46958 * 179.97438 * 3 2 1 5 5 C 1.33814 * 122.44474 * 89.97430 * 4 3 2 6 6 S 1.70616 * 110.95019 * 180.02562 * 5 4 3 7 7 C 1.75823 * 91.56508 * 0.02562 * 6 5 4 8 8 C 1.46582 * 125.46001 * 179.97438 * 7 6 5 9 9 O 1.21702 * 120.00177 * 180.02562 * 8 7 6 10 10 N 1.34784 * 119.99835 * 0.02562 * 8 7 6 11 11 C 1.47017 * 125.64909 * 0.04631 * 10 8 7 12 12 C 1.54318 * 107.27230 * 178.90166 * 11 10 8 13 13 C 1.55151 * 102.94375 * 337.80338 * 12 11 10 14 14 H 1.08998 * 111.00631 * 277.43091 * 13 12 11 15 15 C 1.53000 * 111.00550 * 153.57418 * 13 12 11 16 16 H 1.08997 * 109.47419 * 306.34703 * 15 13 12 17 17 C 1.53004 * 109.47179 * 66.35371 * 15 13 12 18 18 N 1.46502 * 109.47210 * 186.35067 * 15 13 12 19 19 C 1.36937 * 120.00063 * 154.99976 * 18 15 13 20 20 H 1.08002 * 120.00370 * 0.02562 * 19 18 15 21 21 C 1.38819 * 119.99901 * 180.02562 * 19 18 15 22 22 N 1.31611 * 120.00261 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99611 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47164 * 90.00314 * 23 21 19 25 25 H 1.48502 * 109.46903 * 209.99956 * 23 21 19 26 26 H 1.48501 * 109.47187 * 329.99727 * 23 21 19 27 27 C 1.47421 * 125.64598 * 179.97438 * 10 8 7 28 28 C 1.36644 * 109.08610 * 0.26095 * 7 6 5 29 29 H 1.08996 * 109.47027 * 59.99903 * 1 2 3 30 30 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46880 * 299.99528 * 1 2 3 32 32 H 1.09003 * 109.47007 * 60.00376 * 3 2 1 33 33 H 1.08997 * 109.47456 * 300.00217 * 3 2 1 34 34 H 1.07996 * 124.52461 * 0.05252 * 5 4 3 35 35 H 1.09000 * 109.88045 * 298.31928 * 11 10 8 36 36 H 1.09004 * 109.88579 * 59.32785 * 11 10 8 37 37 H 1.08998 * 110.72193 * 219.44087 * 12 11 10 38 38 H 1.09005 * 110.72093 * 96.16887 * 12 11 10 39 39 H 1.08999 * 109.46893 * 59.99837 * 17 15 13 40 40 H 1.09000 * 109.47235 * 180.02562 * 17 15 13 41 41 H 1.08997 * 109.46462 * 299.99972 * 17 15 13 42 42 H 0.97003 * 119.99868 * 335.00631 * 18 15 13 43 43 H 0.96995 * 120.00319 * 179.97438 * 22 21 19 44 44 H 1.09001 * 110.36853 * 85.33281 * 27 10 8 45 45 H 1.08995 * 110.46528 * 323.04983 * 27 10 8 46 46 H 1.07995 * 123.35610 * 179.73407 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2286 1.1291 -1.1283 6 16 5.8952 0.9966 -0.7876 7 6 5.5922 1.0205 0.9441 8 6 6.6179 0.9384 1.9881 9 8 6.2954 0.9635 3.1613 10 7 7.9182 0.8350 1.6486 11 6 8.4450 0.7947 0.2766 12 6 9.9819 0.7002 0.3786 13 6 10.2715 1.2627 1.7952 14 1 10.2982 2.3523 1.7851 15 6 11.5740 0.6895 2.3572 16 1 11.5393 -0.3992 2.3165 17 6 12.7543 1.1938 1.5244 18 7 11.7377 1.1211 3.7476 19 6 12.4957 0.3760 4.6110 20 1 12.9732 -0.5295 4.2670 21 6 12.6504 0.7847 5.9287 22 7 12.0689 1.8885 6.3479 23 14 13.6850 -0.2313 7.1063 24 1 15.0937 0.2359 7.0568 25 1 13.1601 -0.0758 8.4867 26 1 13.6235 -1.6615 6.7115 27 6 9.0478 0.7452 2.5916 28 6 4.2469 1.1215 1.1610 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8079 1.1626 -2.1224 35 1 8.0537 -0.0787 -0.2451 36 1 8.1616 1.7024 -0.2562 37 1 10.4576 1.3154 -0.3852 38 1 10.3106 -0.3361 0.3004 39 1 12.7889 2.2825 1.5653 40 1 13.6822 0.7851 1.9245 41 1 12.6325 0.8727 0.4900 42 1 11.3090 1.9345 4.0566 43 1 12.1766 2.1739 7.2687 44 1 9.2048 -0.2890 2.8981 45 1 8.8681 1.3752 3.4627 46 1 3.8047 1.1512 2.1459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672216673.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:20 Heat of formation + Delta-G solvation = -32.690903 kcal Electronic energy + Delta-G solvation = -26537.713906 eV Core-core repulsion = 22747.565318 eV Total energy + Delta-G solvation = -3790.148588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.07196 -39.09056 -37.84247 -36.93710 -35.20523 -32.54351 -31.05938 -30.35798 -28.82158 -28.25102 -27.89429 -26.14113 -24.92147 -23.88927 -22.68357 -21.58378 -20.00211 -19.66739 -19.16037 -18.10684 -17.05593 -16.77603 -16.57863 -16.11476 -15.96547 -15.62406 -15.15228 -14.82895 -14.29410 -13.84308 -13.81961 -13.69957 -13.29307 -13.19585 -13.05280 -12.74531 -12.57272 -12.43577 -12.27136 -12.18578 -12.05497 -11.84113 -11.70498 -11.34527 -10.94322 -10.87030 -10.77127 -10.57995 -10.54593 -10.21629 -10.08077 -9.97977 -9.84033 -9.60697 -9.10381 -8.89445 -8.79638 -8.47774 -6.94544 -5.73452 -3.02660 0.33550 1.27275 1.66207 2.01770 2.97644 3.18554 3.45873 3.51039 3.53043 3.70319 4.36764 4.58603 4.59862 4.62982 4.70943 4.85923 4.89550 4.96574 4.99413 5.01177 5.03891 5.26383 5.30097 5.31581 5.39992 5.56474 5.61332 5.66449 5.86076 5.87687 5.90861 6.00247 6.03381 6.10015 6.16452 6.30325 6.37700 6.39188 6.56358 6.62817 6.75261 6.84994 7.07318 7.54269 7.72499 8.17882 8.44389 9.55841 10.12362 10.46711 11.48995 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019770 B = 0.002315 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.980106 B =12090.518685 C =13173.323979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.122 3.878 4 C -0.122 4.122 5 C -0.232 4.232 6 S 0.227 5.773 7 C -0.257 4.257 8 C 0.599 3.401 9 O -0.525 6.525 10 N -0.614 5.614 11 C 0.087 3.913 12 C -0.118 4.118 13 C -0.102 4.102 14 H 0.082 0.918 15 C 0.185 3.815 16 H 0.050 0.950 17 C -0.164 4.164 18 N -0.724 5.724 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.122 3.878 28 C -0.044 4.044 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.166 0.834 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.054 0.946 41 H 0.037 0.963 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.490 -0.509 -21.444 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.044 3.956 4 C -0.135 4.135 5 C -0.369 4.369 6 S 0.497 5.503 7 C -0.377 4.377 8 C 0.387 3.613 9 O -0.403 6.403 10 N -0.347 5.347 11 C -0.038 4.038 12 C -0.157 4.157 13 C -0.122 4.122 14 H 0.100 0.900 15 C 0.074 3.926 16 H 0.068 0.932 17 C -0.224 4.224 18 N -0.366 5.366 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.001 3.999 28 C -0.076 4.076 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.184 0.816 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -17.223 -0.894 -21.602 27.642 hybrid contribution -1.187 0.135 1.488 1.908 sum -18.411 -0.759 -20.114 27.278 Atomic orbital electron populations 1.22764 0.80905 1.02942 1.00015 1.87987 1.19626 1.27464 1.95403 1.21018 0.88506 0.85065 1.01020 1.18381 0.95706 1.07405 0.92004 1.25520 1.00934 1.07346 1.03137 1.83353 1.01989 1.66519 0.98476 1.24589 0.97964 1.18103 0.97046 1.16526 0.80358 0.77209 0.87234 1.90873 1.80562 1.50774 1.18113 1.48429 1.05598 1.72261 1.08458 1.22185 0.96206 1.01500 0.83896 1.22644 0.92045 1.02723 0.98272 1.22694 0.95450 1.00826 0.93247 0.89955 1.20157 0.89666 0.96773 0.85965 0.93236 1.22441 1.00873 1.01039 0.98043 1.42417 1.60323 1.29228 1.04590 1.19193 1.22812 1.04205 0.90760 0.91214 1.24737 1.00982 0.97815 0.97338 1.69650 1.47861 1.23845 1.16527 0.86223 0.79859 0.79489 0.80800 1.21832 1.21820 1.20797 1.22296 0.82746 1.02449 0.92412 1.20573 0.90993 0.96201 0.99869 0.94086 0.89497 0.93871 0.92046 0.92348 0.81604 0.91060 0.91049 0.89740 0.90014 0.93489 0.92737 0.94390 0.78240 0.93509 0.90703 0.89472 0.82871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.86 10.69 -35.23 -0.38 -4.24 16 3 C 0.12 1.04 6.18 36.01 0.22 1.26 16 4 C -0.12 -1.26 5.41 -106.45 -0.58 -1.83 16 5 C -0.23 -2.05 10.67 29.18 0.31 -1.74 16 6 S 0.23 2.10 18.43 -107.50 -1.98 0.12 16 7 C -0.26 -3.41 6.38 -36.79 -0.23 -3.65 16 8 C 0.60 10.01 7.82 -12.89 -0.10 9.90 16 9 O -0.53 -10.89 17.10 5.19 0.09 -10.80 16 10 N -0.61 -9.30 3.33 -172.11 -0.57 -9.88 16 11 C 0.09 0.96 5.18 -3.07 -0.02 0.94 16 12 C -0.12 -1.31 5.59 -24.90 -0.14 -1.45 16 13 C -0.10 -1.55 2.62 -88.48 -0.23 -1.79 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 15 C 0.18 3.39 2.41 -67.93 -0.16 3.23 16 16 H 0.05 0.93 8.05 -51.93 -0.42 0.51 16 17 C -0.16 -2.72 9.34 37.16 0.35 -2.37 16 18 N -0.72 -17.46 4.82 -53.42 -0.26 -17.71 16 19 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 23 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 C 0.12 2.11 6.08 -2.54 -0.02 2.10 16 28 C -0.04 -0.54 9.80 -40.44 -0.40 -0.94 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 33 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 34 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.07 0.68 6.98 -51.93 -0.36 0.32 16 36 H 0.07 0.69 6.82 -51.93 -0.35 0.33 16 37 H 0.08 0.76 8.13 -51.93 -0.42 0.34 16 38 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.04 0.50 7.50 -51.93 -0.39 0.11 16 42 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.07 1.38 8.03 -51.93 -0.42 0.96 16 45 H 0.09 1.78 8.04 -51.93 -0.42 1.36 16 46 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -33.75 388.92 -8.95 -42.70 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.29 Total: 6.05 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -0.13 Total: -2.11 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.11 Total: -55.07 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.29 Total: -15.04 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.98 Total: 0.12 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.75 -8.95 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672216673.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.012 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds