Wall clock time and date at job start Tue Mar 31 2020 20:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99784 * 2 1 4 4 C 1.50706 * 109.46958 * 179.97438 * 3 2 1 5 5 C 1.33814 * 122.44474 * 89.97430 * 4 3 2 6 6 S 1.70616 * 110.95019 * 180.02562 * 5 4 3 7 7 C 1.75823 * 91.56508 * 0.02562 * 6 5 4 8 8 C 1.46582 * 125.46001 * 179.97438 * 7 6 5 9 9 O 1.21702 * 120.00177 * 180.02562 * 8 7 6 10 10 N 1.34784 * 119.99835 * 0.02562 * 8 7 6 11 11 C 1.47017 * 125.64909 * 0.04631 * 10 8 7 12 12 C 1.54318 * 107.27230 * 178.90166 * 11 10 8 13 13 C 1.55151 * 102.94375 * 337.80338 * 12 11 10 14 14 H 1.08998 * 111.00631 * 277.43091 * 13 12 11 15 15 C 1.53000 * 111.00550 * 153.57418 * 13 12 11 16 16 H 1.08997 * 109.47419 * 306.34703 * 15 13 12 17 17 C 1.53004 * 109.47179 * 66.35371 * 15 13 12 18 18 N 1.46502 * 109.47210 * 186.35067 * 15 13 12 19 19 C 1.36937 * 120.00063 * 154.99976 * 18 15 13 20 20 H 1.08002 * 120.00370 * 0.02562 * 19 18 15 21 21 C 1.38819 * 119.99901 * 180.02562 * 19 18 15 22 22 N 1.31611 * 120.00261 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99611 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47164 * 90.00314 * 23 21 19 25 25 H 1.48502 * 109.46903 * 209.99956 * 23 21 19 26 26 H 1.48501 * 109.47187 * 329.99727 * 23 21 19 27 27 C 1.47421 * 125.64598 * 179.97438 * 10 8 7 28 28 C 1.36644 * 109.08610 * 0.26095 * 7 6 5 29 29 H 1.08996 * 109.47027 * 59.99903 * 1 2 3 30 30 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46880 * 299.99528 * 1 2 3 32 32 H 1.09003 * 109.47007 * 60.00376 * 3 2 1 33 33 H 1.08997 * 109.47456 * 300.00217 * 3 2 1 34 34 H 1.07996 * 124.52461 * 0.05252 * 5 4 3 35 35 H 1.09000 * 109.88045 * 298.31928 * 11 10 8 36 36 H 1.09004 * 109.88579 * 59.32785 * 11 10 8 37 37 H 1.08998 * 110.72193 * 219.44087 * 12 11 10 38 38 H 1.09005 * 110.72093 * 96.16887 * 12 11 10 39 39 H 1.08999 * 109.46893 * 59.99837 * 17 15 13 40 40 H 1.09000 * 109.47235 * 180.02562 * 17 15 13 41 41 H 1.08997 * 109.46462 * 299.99972 * 17 15 13 42 42 H 0.97003 * 119.99868 * 335.00631 * 18 15 13 43 43 H 0.96995 * 120.00319 * 179.97438 * 22 21 19 44 44 H 1.09001 * 110.36853 * 85.33281 * 27 10 8 45 45 H 1.08995 * 110.46528 * 323.04983 * 27 10 8 46 46 H 1.07995 * 123.35610 * 179.73407 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2286 1.1291 -1.1283 6 16 5.8952 0.9966 -0.7876 7 6 5.5922 1.0205 0.9441 8 6 6.6179 0.9384 1.9881 9 8 6.2954 0.9635 3.1613 10 7 7.9182 0.8350 1.6486 11 6 8.4450 0.7947 0.2766 12 6 9.9819 0.7002 0.3786 13 6 10.2715 1.2627 1.7952 14 1 10.2982 2.3523 1.7851 15 6 11.5740 0.6895 2.3572 16 1 11.5393 -0.3992 2.3165 17 6 12.7543 1.1938 1.5244 18 7 11.7377 1.1211 3.7476 19 6 12.4957 0.3760 4.6110 20 1 12.9732 -0.5295 4.2670 21 6 12.6504 0.7847 5.9287 22 7 12.0689 1.8885 6.3479 23 14 13.6850 -0.2313 7.1063 24 1 15.0937 0.2359 7.0568 25 1 13.1601 -0.0758 8.4867 26 1 13.6235 -1.6615 6.7115 27 6 9.0478 0.7452 2.5916 28 6 4.2469 1.1215 1.1610 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8079 1.1626 -2.1224 35 1 8.0537 -0.0787 -0.2451 36 1 8.1616 1.7024 -0.2562 37 1 10.4576 1.3154 -0.3852 38 1 10.3106 -0.3361 0.3004 39 1 12.7889 2.2825 1.5653 40 1 13.6822 0.7851 1.9245 41 1 12.6325 0.8727 0.4900 42 1 11.3090 1.9345 4.0566 43 1 12.1766 2.1739 7.2687 44 1 9.2048 -0.2890 2.8981 45 1 8.8681 1.3752 3.4627 46 1 3.8047 1.1512 2.1459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672216673.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:19 Heat of formation + Delta-G solvation = -55.756287 kcal Electronic energy + Delta-G solvation = -26538.714096 eV Core-core repulsion = 22747.565318 eV Total energy + Delta-G solvation = -3791.148778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28372 -39.90303 -39.00944 -37.78190 -36.81287 -34.33764 -32.37277 -31.48798 -30.10845 -29.68152 -28.63418 -26.75890 -26.10691 -25.69097 -23.70776 -22.95025 -21.09486 -21.00958 -20.03560 -19.36619 -18.81312 -17.56248 -17.38851 -17.28912 -16.99953 -16.59929 -16.30349 -16.10081 -15.62496 -15.43136 -15.18261 -14.69149 -14.49642 -14.33856 -14.03591 -13.97272 -13.76006 -13.58055 -13.41408 -13.11689 -13.05143 -12.99405 -12.91068 -12.76493 -12.35664 -12.28189 -12.22265 -12.04303 -11.84970 -11.63566 -11.51816 -11.38157 -11.22895 -10.92310 -10.65101 -10.10775 -9.70491 -9.44827 -8.97493 -7.91510 -5.18799 -0.55607 0.44106 0.87455 1.14492 1.46147 1.48015 1.55876 1.79675 2.01848 2.57188 3.10622 3.33015 3.43092 3.58005 3.71796 3.85900 3.95972 4.03803 4.18179 4.19448 4.24256 4.36447 4.40231 4.50500 4.53007 4.56332 4.59989 4.61272 4.64793 4.77402 4.84813 4.87606 4.89100 4.94400 5.09156 5.12658 5.18993 5.20184 5.29622 5.33651 5.42743 5.55198 5.68126 6.20577 6.30712 6.35313 6.92645 7.36484 8.14987 8.35339 9.32197 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019770 B = 0.002315 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.980106 B =12090.518685 C =13173.323979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.121 3.879 4 C -0.141 4.141 5 C -0.215 4.215 6 S 0.300 5.700 7 C -0.302 4.302 8 C 0.590 3.410 9 O -0.588 6.588 10 N -0.613 5.613 11 C 0.080 3.920 12 C -0.105 4.105 13 C -0.092 4.092 14 H 0.079 0.921 15 C 0.178 3.822 16 H 0.048 0.952 17 C -0.152 4.152 18 N -0.739 5.739 19 C -0.229 4.229 20 H 0.078 0.922 21 C -0.082 4.082 22 N -0.972 5.972 23 Si 0.968 3.032 24 H -0.287 1.287 25 H -0.302 1.302 26 H -0.269 1.269 27 C 0.126 3.874 28 C -0.048 4.048 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.202 0.798 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.041 0.959 40 H 0.033 0.967 41 H 0.084 0.916 42 H 0.369 0.631 43 H 0.248 0.752 44 H 0.056 0.944 45 H 0.040 0.960 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.657 -1.215 -26.298 32.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.043 3.957 4 C -0.153 4.153 5 C -0.353 4.353 6 S 0.570 5.430 7 C -0.421 4.421 8 C 0.381 3.619 9 O -0.471 6.471 10 N -0.345 5.345 11 C -0.043 4.043 12 C -0.143 4.143 13 C -0.112 4.112 14 H 0.098 0.902 15 C 0.070 3.930 16 H 0.066 0.934 17 C -0.212 4.212 18 N -0.378 5.378 19 C -0.361 4.361 20 H 0.096 0.904 21 C -0.274 4.274 22 N -0.623 5.623 23 Si 0.798 3.202 24 H -0.214 1.214 25 H -0.229 1.229 26 H -0.194 1.194 27 C 0.003 3.997 28 C -0.083 4.083 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.219 0.781 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.140 0.860 38 H 0.113 0.887 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.102 0.898 42 H 0.201 0.799 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.364 -1.636 -26.561 31.775 hybrid contribution -1.220 0.320 2.853 3.119 sum -18.583 -1.316 -23.708 30.152 Atomic orbital electron populations 1.22935 0.79293 1.03770 1.01121 1.87932 1.21513 1.28414 1.95645 1.21107 0.87375 0.84849 1.02345 1.18482 0.96855 1.08482 0.91498 1.25998 1.00860 1.04240 1.04171 1.82873 1.01727 1.64731 0.93682 1.24355 0.97165 1.21292 0.99332 1.17128 0.81279 0.76144 0.87389 1.90819 1.81636 1.53701 1.20915 1.48482 1.04712 1.71447 1.09880 1.22534 0.96285 1.03760 0.81678 1.22706 0.92048 1.03949 0.95617 1.22514 0.92423 1.00545 0.95734 0.90234 1.20443 0.92153 0.96839 0.83554 0.93378 1.22269 0.98385 1.00534 1.00023 1.42670 1.59771 1.28486 1.06909 1.19605 1.21347 1.03974 0.91171 0.90425 1.25532 1.03216 0.99298 0.99325 1.69820 1.50279 1.25922 1.16304 0.85211 0.78238 0.78670 0.78119 1.21381 1.22885 1.19396 1.22028 0.85079 1.00345 0.92251 1.20669 0.91296 0.96000 1.00294 0.92289 0.88910 0.93428 0.92011 0.89732 0.78129 0.88669 0.88743 0.86040 0.88696 0.93973 0.94769 0.89752 0.79921 0.94370 0.92562 0.94132 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.74 10.69 -148.98 -1.59 -9.33 16 3 C 0.12 1.85 6.18 71.24 0.44 2.29 16 4 C -0.14 -2.67 5.41 -21.05 -0.11 -2.78 16 5 C -0.21 -2.98 10.67 66.81 0.71 -2.27 16 6 S 0.30 4.47 18.43 -56.49 -1.04 3.43 16 7 C -0.30 -7.98 6.38 24.08 0.15 -7.82 16 8 C 0.59 20.75 7.82 86.42 0.68 21.43 16 9 O -0.59 -26.80 17.10 -4.35 -0.07 -26.87 16 10 N -0.61 -18.78 3.33 -816.64 -2.72 -21.50 16 11 C 0.08 1.51 5.18 86.73 0.45 1.96 16 12 C -0.11 -1.90 5.59 31.78 0.18 -1.72 16 13 C -0.09 -2.73 2.62 -9.41 -0.02 -2.75 16 14 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 15 C 0.18 6.42 2.41 44.99 0.11 6.53 16 16 H 0.05 1.76 8.05 -2.39 -0.02 1.74 16 17 C -0.15 -4.69 9.34 71.98 0.67 -4.02 16 18 N -0.74 -36.61 4.82 -322.93 -1.56 -38.17 16 19 C -0.23 -12.68 9.93 84.04 0.83 -11.84 16 20 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 22 N -0.97 -61.50 13.06 21.65 0.28 -61.22 16 23 Si 0.97 47.44 29.55 68.60 2.03 49.47 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 26 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 27 C 0.13 4.58 6.08 86.85 0.53 5.11 16 28 C -0.05 -1.23 9.80 21.72 0.21 -1.02 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 33 H 0.08 0.82 8.12 -2.39 -0.02 0.81 16 34 H 0.20 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.10 1.41 6.98 -2.39 -0.02 1.39 16 36 H 0.09 1.40 6.82 -2.39 -0.02 1.38 16 37 H 0.12 1.42 8.13 -2.39 -0.02 1.40 16 38 H 0.09 1.54 8.01 -2.38 -0.02 1.52 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.82 7.50 -2.39 -0.02 1.81 16 42 H 0.37 20.24 7.80 -92.71 -0.72 19.51 16 43 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.06 2.21 8.03 -2.39 -0.02 2.19 16 45 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 46 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -80.42 388.92 2.13 -78.29 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.25 Total: 25.62 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 6.54 Total: 0.29 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -3.99 Total: -120.89 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -1.67 Total: -36.20 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -1.04 Total: 3.43 kcal Total: -80.42 2.13 -78.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672216673.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.532 kcal (2) G-P(sol) polarization free energy of solvation -80.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds